NO06G02840.1, NO06G02840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02840.1
Unique NameNO06G02840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2491
Alignment locationchr6:815528..818183 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:815528..818183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02840.1 vs.
Match: EWM26304.1 (protein serine threonine kinase [Nannochloropsis gaditana])

HSP 1 Score: 571.2 bits (1471), Expect = 2.600e-159
Identity = 310/423 (73.29%), Postives = 335/423 (79.20%), Query Frame = 0
Query:    1 MERYQKLEKIGEGTYGVVYKAKDRVTNEVVALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQDLKKYLDICDNGLELAVLQSFLYQLLHGVAYCHDHRVLHRDLKPQNLLINRDGELKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRPLFAGASESDQLDRIFRALGTPTEAVYPGIVELPEFQKVKTQFPRYQSLESWASLVPTLPPLGIDLISKMLTFDPSKRISARDALAHAFFGEIHAHGHVH---IQQGMGVGGRGGEEGGGGGGVHHHHQQFHHQQQQFHNHHHHHHHQQQQQQQIQQQIQLQPMMNAHIYGAQAQHQSHHSHHHQHPSLGMPISTAPPPHLNHHHQQQQQQQQQLPPGSMGEMG 421
            MERYQKLEKIGEGTYGVV+KAKDRVTNE++ALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFE+LDQDLKKYLD C++GL+L VLQSFLYQLLHGVA+CHDHRVLHRDLKPQNLLINR+GELKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRPLFAG+SESDQLDRIFRALGTPTE +YPGIVELPEFQKVK QFPRY  LESWA LVPTLPP+GIDL+ KMLTFDP+KR+SARDAL+H FFG+IHAHGH H   I+ GM  GGRGG                HH        H HH HQQ  Q   QQ  Q  PM + H  G      SHH       SL +      PPH  H      QQ   + P ++G++G
Sbjct:    1 MERYQKLEKIGEGTYGVVFKAKDRVTNEILALKKIRLEAEDEGIPSTAIREISLLKELQHPNIVRLYDVVHTERKLTLVFEYLDQDLKKYLDTCESGLDLPVLQSFLYQLLHGVAFCHDHRVLHRDLKPQNLLINREGELKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRPLFAGSSESDQLDRIFRALGTPTEGMYPGIVELPEFQKVKNQFPRYSPLESWAPLVPTLPPVGIDLLGKMLTFDPAKRVSARDALSHPFFGDIHAHGHAHPAQIEPGMTAGGRGGIP----------PYSIHHPP------HQHHIHQQPSQ---QQHFQHGPMHSVHPQG------SHHPTQAHGASLAL-----GPPHAGH----PAQQPSSMAPAAVGDVG 389          
The following BLAST results are available for this feature:
BLAST of NO06G02840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26304.12.600e-15973.29protein serine threonine kinase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02840NO06G02840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02840.1NO06G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02840.1.cds1NO06G02840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02840.1.cds2NO06G02840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02840.1 ID=NO06G02840.1|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2491bp
GAACTTGGGCATGGTTTCACCTGTAGCGTAGTGTGTGCGTGAACGGGGCA
TGGGAAGGGGCGGCGGGTTATAGAACAAAAAGACAGAAGATCGCCTCGAA
CAAGCTTTTGGTGTGTTGCGTCCGCCACTAATAGGACACGGTAGAGTTTC
TCAAGCCCAATACGTAAAAGAACATCAGGGCACTATGTTTATTGCACTTG
TTCAGTGCTACTGTGTGCACTAGGGCATTTGGACGGGGTCGTATGACGCG
GCGAAGTGGTCGCCATTGCCGCGTCGACCTCCCCTCTTATCCATGCAAGT
TTGCTCTCATCATCTCCTCGGCTTCCTGTCCAGCTGGGATGCGTTTGCCT
CCAAGGACAATTGACGGCGTCCTCAAGTAGACATGTTATGATGGGTTTGA
ACATTTTTCATGATCGTGGGATGGCTTGCTGTATCATGGTCTCGATCTAG
CACCCTCATCTTCCACAACCACACACACAGGCCCCTGGTTGGATTCCGGG
TCGCCGGTCCTCGTCGATTCTTCCTTGCCCGGTGACGCCCGCTCCTCCTC
CAGTCACACACATCCGCCTCCGCAACCGAGCGCTAATACTTCACCAATTA
AAAAGAAGGTTCACCTCGCCATCCTCACGTGCTATTCTAGACACAGTTCC
ACAAAATCAACCTTACGACTATCATTACAAATCATCCCCTCCTCTCGGCC
TGGACAAGAGCCTCGGCAGCAAACACCCCTGACACGCCTCAATGGAGCGG
TACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGTGGTGTACAA
GGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAAAGATCCGCC
TGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGGGAGATTTCC
CTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATACGACGTAGT
TCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCGACCAAGACC
TGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTCGCCGTCCTT
CAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTGCCACGACCA
CCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCATCAATCGCG
ACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCGTTCGGCATC
CCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTACCGTGCCCC
CGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGGATATCTGGT
CGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCATTGTTTGCG
GGGGCCTCGGAGAGTGATCAATTGGATAGAATTTTTCGCGCCCTTGGCAC
GCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGCTGCCGGAATTTCAAA
AAGTCAAAACACAATTTCCACGTTATCAATCCCTGGAGTCCTGGGCGAGT
TTAGTGCCGACGTTACCGCCGTTGGGGATCGATTTGATCAGTAAGATGTT
GACATTTGACCCGTCGAAGAGGATATCAGCGAGAGATGCCTTGGCCCATG
CCTTCTTTGGGGAGATCCATGCGCATGGCCATGTGCATATACAGCAGGGA
ATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGGAGGAGGGGGGGGGGT
CCACCATCATCATCAGCAGTTCCATCATCAGCAGCAGCAGTTCCATAATC
ACCATCATCACCACCATCATCAACAACAGCAGCAACAGCAGATCCAGCAG
CAAATCCAACTGCAGCCAATGATGAATGCGCACATTTATGGCGCCCAAGC
ACAACATCAATCTCACCACAGCCACCATCATCAGCATCCATCACTTGGCA
TGCCTATTTCCACGGCGCCACCACCACACCTAAACCACCACCACCAGCAG
CAGCAACAGCAGCAGCAACAGCTACCACCAGGCTCGATGGGTGAAATGGG
AGGCAGATTTTAGACTAGGAAGGATTTTCCAGTGATGTCTCAGTGTGCAT
AGAAATAAAGGACGAGGAGACAGGGAAAAAACCCTGGGGGGATTACTGAA
GTATGAGCGAGGGATGGGGAGGGAATGACTGGCTGCAAGATAAAGTCATG
AGGAGATGAGACGGAGGATAGGATAATCAAACAAAGACCACAGCAGTCCT
TTGCCAGCAGCGTGCAAGAAGGCTGATCGACAAGGAGGTAAAGATTGCGA
AAGATGGTGAGCATATTAAGTGTCAAAAGGGTAGAAAGAAAGAGAGAAGG
TAAGTGTGCTGCACTAGCCCACTTGGGGGAAGAAAACGAAGAAATTATAA
TTCTCTGCCCCAGTGGCACTGAGGGTGTATAAAGTAGCACGAAAGTAGGA
TAACAGCAATTAGAACAAAACTTCATCCGAAACAAAACCAAAGACAAAGG
AAGTGAATGACAACGAGAAGCTGACCGAGACTGAAACCAAT
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protein sequence of NO06G02840.1

>NO06G02840.1-protein ID=NO06G02840.1-protein|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MERYQKLEKIGEGTYGVVYKAKDRVTNEVVALKKIRLEAEDEGIPSTAIR
EISLLKELQHPNIVRLYDVVHTERKLTLVFEFLDQDLKKYLDICDNGLEL
AVLQSFLYQLLHGVAYCHDHRVLHRDLKPQNLLINRDGELKLADFGLARA
FGIPVRSYTHEVVTLWYRAPDVLMGSRKYSTPVDIWSIGCIFAEMANGRP
LFAGASESDQLDRIFRALGTPTEAVYPGIVELPEFQKVKTQFPRYQSLES
WASLVPTLPPLGIDLISKMLTFDPSKRISARDALAHAFFGEIHAHGHVHI
QQGMGVGGRGGEEGGGGGGVHHHHQQFHHQQQQFHNHHHHHHHQQQQQQQ
IQQQIQLQPMMNAHIYGAQAQHQSHHSHHHQHPSLGMPISTAPPPHLNHH
HQQQQQQQQQLPPGSMGEMGGRF*
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mRNA from alignment at chr6:815528..818183+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02840.1 ID=NO06G02840.1|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2656bp|location=Sequence derived from alignment at chr6:815528..818183+ (Nannochloropsis oceanica)
GAACTTGGGCATGGTTTCACCTGTAGCGTAGTGTGTGCGTGAACGGGGCA TGGGAAGGGGCGGCGGGTTATAGAACAAAAAGACAGAAGATCGCCTCGAA CAAGCTTTTGGTGTGTTGCGTCCGCCACTAATAGGACACGGTAGAGTTTC TCAAGCCCAATACGTAAAAGAACATCAGGGCACTATGTTTATTGCACTTG TTCAGTGCTACTGTGTGCACTAGGGCATTTGGACGGGGTCGTATGACGCG GCGAAGTGGTCGCCATTGCCGCGTCGACCTCCCCTCTTATCCATGCAAGT TTGCTCTCATCATCTCCTCGGCTTCCTGTCCAGCTGGGATGCGTTTGCCT CCAAGGACAATTGACGGCGTCCTCAAGTAGACATGTTATGATGGGTTTGA ACATTTTTCATGATCGTGGGATGGCTTGCTGTATCATGGTCTCGATCTAG CACCCTCATCTTCCACAACCACACACACAGGCCCCTGGTTGGATTCCGGG TCGCCGGTCCTCGTCGATTCTTCCTTGCCCGGTGACGCCCGCTCCTCCTC CAGTCACACACATCCGCCTCCGCAACCGAGCGCTAATACTTCACCAATTA AAAAGAAGGTTCACCTCGCCATCCTCACGTGCTATTCTAGACACAGTTCC ACAAAATCAACCTTACGACTATCATTACAAATCATCCCCTCCTCTCGGCC TGGACAAGAGCCTCGGCAGCAAACACCCCTGACACGCCTCAATGGAGCGG TACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGTGGTGTACAA GGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAAAGATCCGCC TGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGGGAGATTTCC CTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATACGACGTAGT TCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCGACCAAGACC TGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTCGCCGTCCTT CAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTGCCACGACCA CCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCATCAATCGCG ACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCGTTCGGCATC CCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTACCGTGCCCC CGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGGATATCTGGT CGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCATTGTTTGCG GGGGCCTCGGAGAGTGATCAATTGGATAGGTGAGGAGGGAGGAAAGGAGG GAGGGAGGAAGGGAGGAAAGGAGCATTTGCCGACGGTGATCCACCATCTC TTGAAGATATTCTCGGGTCTTGCAGATCTGATTCCCACACACGAATTCCT ATTCCTCATTTTTTTGTTCCTTTCCCCTCCCCGTCTTGCAATAGAATTTT TCGCGCCCTTGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGC TGCCGGAATTTCAAAAAGTCAAAACACAATTTCCACGTTATCAATCCCTG GAGTCCTGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGATTT GATCAGTAAGATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAGAG ATGCCTTGGCCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATGTG CATATACAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGG AGGAGGGGGGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGCAGC AGCAGTTCCATAATCACCATCATCACCACCATCATCAACAACAGCAGCAA CAGCAGATCCAGCAGCAAATCCAACTGCAGCCAATGATGAATGCGCACAT TTATGGCGCCCAAGCACAACATCAATCTCACCACAGCCACCATCATCAGC ATCCATCACTTGGCATGCCTATTTCCACGGCGCCACCACCACACCTAAAC CACCACCACCAGCAGCAGCAACAGCAGCAGCAACAGCTACCACCAGGCTC GATGGGTGAAATGGGAGGCAGATTTTAGACTAGGAAGGATTTTCCAGTGA TGTCTCAGTGTGCATAGAAATAAAGGACGAGGAGACAGGGAAAAAACCCT GGGGGGATTACTGAAGTATGAGCGAGGGATGGGGAGGGAATGACTGGCTG CAAGATAAAGTCATGAGGAGATGAGACGGAGGATAGGATAATCAAACAAA GACCACAGCAGTCCTTTGCCAGCAGCGTGCAAGAAGGCTGATCGACAAGG AGGTAAAGATTGCGAAAGATGGTGAGCATATTAAGTGTCAAAAGGGTAGA AAGAAAGAGAGAAGGTAAGTGTGCTGCACTAGCCCACTTGGGGGAAGAAA ACGAAGAAATTATAATTCTCTGCCCCAGTGGCACTGAGGGTGTATAAAGT AGCACGAAAGTAGGATAACAGCAATTAGAACAAAACTTCATCCGAAACAA AACCAAAGACAAAGGAAGTGAATGACAACGAGAAGCTGACCGAGACTGAA ACCAAT
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Coding sequence (CDS) from alignment at chr6:815528..818183+

>NO06G02840.1 ID=NO06G02840.1|Name=NO06G02840.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr6:815528..818183+ (Nannochloropsis oceanica)
ATGGAGCGGTACCAGAAATTGGAAAAGATAGGGGAAGGCACATACGGGGT
GGTGTACAAGGCCAAGGACCGGGTGACCAATGAGGTCGTCGCTTTGAAAA
AGATCCGCCTGGAAGCCGAAGACGAAGGCATTCCTTCCACGGCCATCCGG
GAGATTTCCCTGCTCAAAGAGCTACAACACCCCAATATCGTACGCTTATA
CGACGTAGTTCACACAGAGCGCAAGCTTACATTGGTATTCGAATTTCTCG
ACCAAGACCTGAAAAAATACCTAGACATATGCGACAATGGCCTCGAGCTC
GCCGTCCTTCAGTCCTTCCTCTACCAGCTCCTCCACGGCGTCGCCTACTG
CCACGACCACCGCGTGCTCCATCGGGATTTGAAACCTCAAAATCTTCTCA
TCAATCGCGACGGTGAATTAAAGCTGGCTGATTTTGGCTTGGCTCGTGCG
TTCGGCATCCCTGTCCGAAGCTACACCCACGAGGTGGTGACGCTCTGGTA
CCGTGCCCCCGACGTGTTGATGGGCTCTAGGAAATACAGCACTCCGGTGG
ATATCTGGTCGATTGGCTGCATTTTTGCTGAGATGGCTAACGGACGGCCA
TTGTTTGCGGGGGCCTCGGAGAGTGATCAATTGGATAGAATTTTTCGCGC
CCTTGGCACGCCCACCGAGGCCGTCTACCCTGGTATAGTGGAGCTGCCGG
AATTTCAAAAAGTCAAAACACAATTTCCACGTTATCAATCCCTGGAGTCC
TGGGCGAGTTTAGTGCCGACGTTACCGCCGTTGGGGATCGATTTGATCAG
TAAGATGTTGACATTTGACCCGTCGAAGAGGATATCAGCGAGAGATGCCT
TGGCCCATGCCTTCTTTGGGGAGATCCATGCGCATGGCCATGTGCATATA
CAGCAGGGAATGGGGGTTGGTGGAAGGGGGGGAGAAGAAGGAGGAGGAGG
GGGGGGGGTCCACCATCATCATCAGCAGTTCCATCATCAGCAGCAGCAGT
TCCATAATCACCATCATCACCACCATCATCAACAACAGCAGCAACAGCAG
ATCCAGCAGCAAATCCAACTGCAGCCAATGATGAATGCGCACATTTATGG
CGCCCAAGCACAACATCAATCTCACCACAGCCACCATCATCAGCATCCAT
CACTTGGCATGCCTATTTCCACGGCGCCACCACCACACCTAAACCACCAC
CACCAGCAGCAGCAACAGCAGCAGCAACAGCTACCACCAGGCTCGATGGG
TGAAATGGGAGGCAGATTTTAG
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Synonyms
Publications