NO06G02820.1, NO06G02820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02820.1
Unique NameNO06G02820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2131
Alignment locationchr6:810155..812285 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:810155..812285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02820.1 vs.
Match: EWM26311.1 (vacuolar sorting protein 9 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 530.8 bits (1366), Expect = 6.100e-147
Identity = 338/660 (51.21%), Postives = 431/660 (65.30%), Query Frame = 0
Query:   13 ARRRALLLEARKQREAWIQDEDYKEVGVVQALMEKQQQQRQQQEQPPSQTKKRGTLTGLFEGIPGLEGVMPIAREYVGFLNELAGEGDREAIEL---VSDASSAAEGDGEDEEGEGAQGEEAPPLPDIALNASVSLSYDDFVQLLAHPGSIEVVKSMQRFVTAFIQSQERREGLSALPPSSLSTPRPQGQHLHAFIESLRLEMCKSGVWAARLAIEEKRSSPGSSSSFSSSSSSAWDGLREHLEKFLVIKLYRYLFTEAETQTLRDQEAAWQARLDSLAFLGPEHLEVRSLISSLPSISISTSLAPAIAEFSLVPSYKAPVDIMSCLLRCSYLLSRGLVAAHPPGTGLPGADEFLPAMILMIKESKPSGLRKALDIVQCYRYPPRLQVSEPAYVFTNVLSAVHFLETAKAGQLNMTPEVFERSLVAC---SRSMGRWREGVFETRAGAGGGGGGVVTGEEEEGHGVGVLPVLSALKDMTLKEGTSLSSSSFLSSSLVVGNGHYKSSEPHGSV-----LLPARSIQDIRRERMAGAAAARVVTVPSTAAVSPSNSTRSFTSLRLHDLLGRIQDTHRNRSSSSNKSSSNSNSSSSRCTQGKHQEGAIGQPHLLQSLSSEQLKKACSFLTVPPQDLRVSDMSALLSEYRCLAIVAGECLNLLQ 662
            +RR  LLLEAR+QR +W+Q+EDY E+ +V+AL+ KQQ+++QQ        K++G+L GLF+ +PGL  V+P AREYVGFLNE+AGE D++A+     V  A SA + D E    E A+ E A PLPD +L+ S  LSYD F++LL HPGS E+VKSMQRFV+AFIQSQERR GL A  P S S+PRPQG+HLHAFI+SLR E+C + VW+ RL       + G  S  S S S+AW+ +REHLEKFLVIKL+RYLFTEAETQ L  +EA W+AR+ SLAFLGPEHLEVRSL+SS    S+S +LAPAI EFS VP++KAP DIM+ LLRCS  L++ LV++   GTGLPGADEFLPAMIL +KES P  LR A+  VQ YR+P RLQV+EPAYVFTNVLSA+HFLETA A QLNMTPE F  S+ AC   SRS+ R +E  F    G G     V           G L   S L++++   G     S+F   ++  G     SS   GS+       P RSIQ+++RER  G   A     P+ AA++P  +     + RL +L+  +Q+ H +R    ++S            QG   +    Q  L  SLSS++L K+CSFL     DLR+SD+SALL+EYRCL  VA +CL LLQ
Sbjct:    9 SRRHDLLLEARRQRSSWLQNEDYVEMDIVEALLAKQQKEQQQHG------KEQGSLAGLFQKVPGLANVLPAAREYVGFLNEVAGEDDQDAVAYDPKVLQALSAVQ-DSETRSLEEAEAEPATPLPDESLDPSTPLSYDGFIRLLMHPGSAEIVKSMQRFVSAFIQSQERRRGLPARAPPSPSSPRPQGEHLHAFIDSLRGELCNNKVWSGRL-------TAGGGSRASGSWSAAWEEVREHLEKFLVIKLHRYLFTEAETQVLVKEEARWRARVQSLAFLGPEHLEVRSLLSSS---SVSAALAPAILEFSRVPAHKAPADIMAGLLRCSQALTQALVSSRVAGTGLPGADEFLPAMILTVKESNPENLRWAIHAVQRYRHPSRLQVAEPAYVFTNVLSAIHFLETADASQLNMTPESFATSVAACKAASRSLSRTQERGFMAEIGDGEDRPLVDLPGPASAPLSGALS--SPLQNLSTARGPVAPPSTF---AMATGRAGPLSSPLSGSLGKKASPWPFRSIQNVQRERELGTRGA-----PTLAAMTPP-APLQVAACRLQELVKDLQE-HASRRLEKDRS------------QGSRSQEIQQQTPLPPSLSSQRLLKSCSFLHASSLDLRLSDISALLAEYRCLVAVADQCLELLQ 627          
The following BLAST results are available for this feature:
BLAST of NO06G02820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26311.16.100e-14751.21vacuolar sorting protein 9 domain-containing prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02820NO06G02820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02820.1NO06G02820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02820.1.cds1NO06G02820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02820.1 ID=NO06G02820.1|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp
ACAGGCAGGGCTATCGTGATCCAGCCGCCCATGTCGTCAGTCTAGTCAGC
CGCTTTCCCCCTCGAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGC
TGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGT
GGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATG
GAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAAC
GAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAG
AGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTC
GCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTC
AGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGG
AGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTG
TCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGT
GGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGC
GACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGT
CCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAAT
GTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCT
CCTCTCCAGGCTCCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGG
GATGGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCG
CTACCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCG
CCTGGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTC
GAAGTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTC
TCTAGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCC
CCGTGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGC
GGGCTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGA
ATTCCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCT
TGAGGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTG
CAGGTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCA
TTTCCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGT
TCGAAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAG
GGTGTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGT
AACGGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGT
CTGCACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCT
TCCTTCTTGTCTTCCTCCCTCGTTGTCGGTAACGGTCATTACAAGAGCAG
CGAACCCCATGGGTCAGTTTTGCTGCCAGCACGCAGTATTCAAGACATAA
GACGAGAACGGATGGCTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCA
AGCACAGCAGCTGTCTCTCCCTCCAATTCTACTCGATCTTTTACTTCCTT
GCGTCTCCACGACTTGCTTGGTCGCATTCAAGACACACATAGGAATCGCA
GCAGTAGTAGCAACAAAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGA
TGCACGCAGGGCAAGCACCAAGAAGGAGCAATAGGACAACCCCACCTCCT
CCAATCCCTCTCCTCCGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTG
TCCCTCCGCAGGACTTGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAG
TATAGATGCCTCGCCATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGA
GCAAAGAAGGTAGGTTGATTTAAACGTAATCTTTAGGTAATGAAAAAGTG
AGAAACGATAAAGTAAAAAAAGCACACGAGA
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protein sequence of NO06G02820.1

>NO06G02820.1-protein ID=NO06G02820.1-protein|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MMTPALAVSRAAARRRALLLEARKQREAWIQDEDYKEVGVVQALMEKQQQ
QRQQQEQPPSQTKKRGTLTGLFEGIPGLEGVMPIAREYVGFLNELAGEGD
REAIELVSDASSAAEGDGEDEEGEGAQGEEAPPLPDIALNASVSLSYDDF
VQLLAHPGSIEVVKSMQRFVTAFIQSQERREGLSALPPSSLSTPRPQGQH
LHAFIESLRLEMCKSGVWAARLAIEEKRSSPGSSSSFSSSSSSAWDGLRE
HLEKFLVIKLYRYLFTEAETQTLRDQEAAWQARLDSLAFLGPEHLEVRSL
ISSLPSISISTSLAPAIAEFSLVPSYKAPVDIMSCLLRCSYLLSRGLVAA
HPPGTGLPGADEFLPAMILMIKESKPSGLRKALDIVQCYRYPPRLQVSEP
AYVFTNVLSAVHFLETAKAGQLNMTPEVFERSLVACSRSMGRWREGVFET
RAGAGGGGGGVVTGEEEEGHGVGVLPVLSALKDMTLKEGTSLSSSSFLSS
SLVVGNGHYKSSEPHGSVLLPARSIQDIRRERMAGAAAARVVTVPSTAAV
SPSNSTRSFTSLRLHDLLGRIQDTHRNRSSSSNKSSSNSNSSSSRCTQGK
HQEGAIGQPHLLQSLSSEQLKKACSFLTVPPQDLRVSDMSALLSEYRCLA
IVAGECLNLLQEQRR*
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mRNA from alignment at chr6:810155..812285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02820.1 ID=NO06G02820.1|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp|location=Sequence derived from alignment at chr6:810155..812285- (Nannochloropsis oceanica)
ACAGGCAGGGCTATCGTGATCCAGCCGCCCATGTCGTCAGTCTAGTCAGC CGCTTTCCCCCTCGAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGC TGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGT GGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATG GAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAAC GAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAG AGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTC GCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTC AGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGG AGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTG TCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGT GGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGC GACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGT CCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAAT GTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCT CCTCTCCAGGCTCCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGG GATGGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCG CTACCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCG CCTGGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTC GAAGTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTC TCTAGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCC CCGTGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGC GGGCTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGA ATTCCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCT TGAGGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTG CAGGTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCA TTTCCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGT TCGAAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAG GGTGTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGT AACGGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGT CTGCACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCT TCCTTCTTGTCTTCCTCCCTCGTTGTCGGTAACGGTCATTACAAGAGCAG CGAACCCCATGGGTCAGTTTTGCTGCCAGCACGCAGTATTCAAGACATAA GACGAGAACGGATGGCTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCA AGCACAGCAGCTGTCTCTCCCTCCAATTCTACTCGATCTTTTACTTCCTT GCGTCTCCACGACTTGCTTGGTCGCATTCAAGACACACATAGGAATCGCA GCAGTAGTAGCAACAAAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGA TGCACGCAGGGCAAGCACCAAGAAGGAGCAATAGGACAACCCCACCTCCT CCAATCCCTCTCCTCCGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTG TCCCTCCGCAGGACTTGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAG TATAGATGCCTCGCCATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGA GCAAAGAAGGTAGGTTGATTTAAACGTAATCTTTAGGTAATGAAAAAGTG AGAAACGATAAAGTAAAAAAAGCACACGAGA
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Coding sequence (CDS) from alignment at chr6:810155..812285-

>NO06G02820.1 ID=NO06G02820.1|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr6:810155..812285- (Nannochloropsis oceanica)
ATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGCTGCCCGCCGCCGTGC
CCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGTGGATCCAGGATGAAG
ATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATGGAGAAGCAGCAACAA
CAGCGGCAGCAGCAGGAGCAGCCACCATCACAAACGAAGAAGAGGGGCAC
TCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAGAGGGCGTGATGCCCA
TCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTCGCAGGAGAAGGAGAC
AGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTCAGCCGCGGAAGGAGA
CGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGGAGGAAGCTCCGCCCT
TGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTGTCGTACGATGATTTC
GTACAGCTTTTGGCTCATCCTGGATCAATTGAAGTGGTGAAATCCATGCA
GCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGCGACGCGAGGGGTTGT
CCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGTCCGCAAGGACAGCAT
CTGCACGCATTTATCGAAAGTTTGCGATTAGAAATGTGCAAGAGTGGGGT
GTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCTCCTCTCCAGGCTCCT
CCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGGGATGGGTTGAGAGAG
CACCTCGAAAAGTTCCTCGTTATCAAACTTTACCGCTACCTTTTCACCGA
AGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCGCCTGGCAAGCCCGCC
TTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTCGAAGTCCGCTCCCTC
ATCTCCTCCTTGCCCTCCATATCCATCTCCACCTCTCTAGCTCCCGCCAT
CGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCCCCGTGGATATAATGT
CTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGCGGGCTCGTTGCAGCT
CACCCTCCCGGAACCGGCCTACCAGGTGCGGATGAATTCCTGCCTGCCAT
GATTTTAATGATCAAAGAGAGTAAACCTTCCGGCTTGAGGAAAGCATTGG
ACATAGTGCAGTGTTACCGCTATCCGCCGCGATTGCAGGTGTCCGAGCCG
GCGTATGTCTTTACGAATGTGCTATCTGCCGTCCATTTCCTGGAGACAGC
GAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGTTCGAAAGATCCTTGG
TAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAGGGTGTGTTCGAAACA
AGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGTAACGGGGGAAGAGGA
GGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGTCTGCACTTAAGGACA
TGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCTTCCTTCTTGTCTTCC
TCCCTCGTTGTCGGTAACGGTCATTACAAGAGCAGCGAACCCCATGGGTC
AGTTTTGCTGCCAGCACGCAGTATTCAAGACATAAGACGAGAACGGATGG
CTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCAAGCACAGCAGCTGTC
TCTCCCTCCAATTCTACTCGATCTTTTACTTCCTTGCGTCTCCACGACTT
GCTTGGTCGCATTCAAGACACACATAGGAATCGCAGCAGTAGTAGCAACA
AAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGATGCACGCAGGGCAAG
CACCAAGAAGGAGCAATAGGACAACCCCACCTCCTCCAATCCCTCTCCTC
CGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTGTCCCTCCGCAGGACT
TGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAGTATAGATGCCTCGCC
ATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGAGCAAAGAAGGTAG
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Synonyms
Publications