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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:810155..812285 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02820.1 vs.
Match: EWM26311.1 (vacuolar sorting protein 9 domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 530.8 bits (1366), Expect = 6.100e-147 Identity = 338/660 (51.21%), Postives = 431/660 (65.30%), Query Frame = 0
Query: 13 ARRRALLLEARKQREAWIQDEDYKEVGVVQALMEKQQQQRQQQEQPPSQTKKRGTLTGLFEGIPGLEGVMPIAREYVGFLNELAGEGDREAIEL---VSDASSAAEGDGEDEEGEGAQGEEAPPLPDIALNASVSLSYDDFVQLLAHPGSIEVVKSMQRFVTAFIQSQERREGLSALPPSSLSTPRPQGQHLHAFIESLRLEMCKSGVWAARLAIEEKRSSPGSSSSFSSSSSSAWDGLREHLEKFLVIKLYRYLFTEAETQTLRDQEAAWQARLDSLAFLGPEHLEVRSLISSLPSISISTSLAPAIAEFSLVPSYKAPVDIMSCLLRCSYLLSRGLVAAHPPGTGLPGADEFLPAMILMIKESKPSGLRKALDIVQCYRYPPRLQVSEPAYVFTNVLSAVHFLETAKAGQLNMTPEVFERSLVAC---SRSMGRWREGVFETRAGAGGGGGGVVTGEEEEGHGVGVLPVLSALKDMTLKEGTSLSSSSFLSSSLVVGNGHYKSSEPHGSV-----LLPARSIQDIRRERMAGAAAARVVTVPSTAAVSPSNSTRSFTSLRLHDLLGRIQDTHRNRSSSSNKSSSNSNSSSSRCTQGKHQEGAIGQPHLLQSLSSEQLKKACSFLTVPPQDLRVSDMSALLSEYRCLAIVAGECLNLLQ 662
+RR LLLEAR+QR +W+Q+EDY E+ +V+AL+ KQQ+++QQ K++G+L GLF+ +PGL V+P AREYVGFLNE+AGE D++A+ V A SA + D E E A+ E A PLPD +L+ S LSYD F++LL HPGS E+VKSMQRFV+AFIQSQERR GL A P S S+PRPQG+HLHAFI+SLR E+C + VW+ RL + G S S S S+AW+ +REHLEKFLVIKL+RYLFTEAETQ L +EA W+AR+ SLAFLGPEHLEVRSL+SS S+S +LAPAI EFS VP++KAP DIM+ LLRCS L++ LV++ GTGLPGADEFLPAMIL +KES P LR A+ VQ YR+P RLQV+EPAYVFTNVLSA+HFLETA A QLNMTPE F S+ AC SRS+ R +E F G G V G L S L++++ G S+F ++ G SS GS+ P RSIQ+++RER G A P+ AA++P + + RL +L+ +Q+ H +R ++S QG + Q L SLSS++L K+CSFL DLR+SD+SALL+EYRCL VA +CL LLQ
Sbjct: 9 SRRHDLLLEARRQRSSWLQNEDYVEMDIVEALLAKQQKEQQQHG------KEQGSLAGLFQKVPGLANVLPAAREYVGFLNEVAGEDDQDAVAYDPKVLQALSAVQ-DSETRSLEEAEAEPATPLPDESLDPSTPLSYDGFIRLLMHPGSAEIVKSMQRFVSAFIQSQERRRGLPARAPPSPSSPRPQGEHLHAFIDSLRGELCNNKVWSGRL-------TAGGGSRASGSWSAAWEEVREHLEKFLVIKLHRYLFTEAETQVLVKEEARWRARVQSLAFLGPEHLEVRSLLSSS---SVSAALAPAILEFSRVPAHKAPADIMAGLLRCSQALTQALVSSRVAGTGLPGADEFLPAMILTVKESNPENLRWAIHAVQRYRHPSRLQVAEPAYVFTNVLSAIHFLETADASQLNMTPESFATSVAACKAASRSLSRTQERGFMAEIGDGEDRPLVDLPGPASAPLSGALS--SPLQNLSTARGPVAPPSTF---AMATGRAGPLSSPLSGSLGKKASPWPFRSIQNVQRERELGTRGA-----PTLAAMTPP-APLQVAACRLQELVKDLQE-HASRRLEKDRS------------QGSRSQEIQQQTPLPPSLSSQRLLKSCSFLHASSLDLRLSDISALLAEYRCLVAVADQCLELLQ 627
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02820.1 ID=NO06G02820.1|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp ACAGGCAGGGCTATCGTGATCCAGCCGCCCATGTCGTCAGTCTAGTCAGC CGCTTTCCCCCTCGAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGC TGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGT GGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATG GAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAAC GAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAG AGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTC GCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTC AGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGG AGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTG TCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGT GGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGC GACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGT CCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAAT GTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCT CCTCTCCAGGCTCCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGG GATGGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCG CTACCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCG CCTGGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTC GAAGTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTC TCTAGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCC CCGTGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGC GGGCTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGA ATTCCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCT TGAGGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTG CAGGTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCA TTTCCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGT TCGAAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAG GGTGTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGT AACGGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGT CTGCACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCT TCCTTCTTGTCTTCCTCCCTCGTTGTCGGTAACGGTCATTACAAGAGCAG CGAACCCCATGGGTCAGTTTTGCTGCCAGCACGCAGTATTCAAGACATAA GACGAGAACGGATGGCTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCA AGCACAGCAGCTGTCTCTCCCTCCAATTCTACTCGATCTTTTACTTCCTT GCGTCTCCACGACTTGCTTGGTCGCATTCAAGACACACATAGGAATCGCA GCAGTAGTAGCAACAAAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGA TGCACGCAGGGCAAGCACCAAGAAGGAGCAATAGGACAACCCCACCTCCT CCAATCCCTCTCCTCCGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTG TCCCTCCGCAGGACTTGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAG TATAGATGCCTCGCCATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGA GCAAAGAAGGTAGGTTGATTTAAACGTAATCTTTAGGTAATGAAAAAGTG AGAAACGATAAAGTAAAAAAAGCACACGAGA back to topprotein sequence of NO06G02820.1 >NO06G02820.1-protein ID=NO06G02820.1-protein|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp MMTPALAVSRAAARRRALLLEARKQREAWIQDEDYKEVGVVQALMEKQQQ QRQQQEQPPSQTKKRGTLTGLFEGIPGLEGVMPIAREYVGFLNELAGEGD REAIELVSDASSAAEGDGEDEEGEGAQGEEAPPLPDIALNASVSLSYDDF VQLLAHPGSIEVVKSMQRFVTAFIQSQERREGLSALPPSSLSTPRPQGQH LHAFIESLRLEMCKSGVWAARLAIEEKRSSPGSSSSFSSSSSSAWDGLRE HLEKFLVIKLYRYLFTEAETQTLRDQEAAWQARLDSLAFLGPEHLEVRSL ISSLPSISISTSLAPAIAEFSLVPSYKAPVDIMSCLLRCSYLLSRGLVAA HPPGTGLPGADEFLPAMILMIKESKPSGLRKALDIVQCYRYPPRLQVSEP AYVFTNVLSAVHFLETAKAGQLNMTPEVFERSLVACSRSMGRWREGVFET RAGAGGGGGGVVTGEEEEGHGVGVLPVLSALKDMTLKEGTSLSSSSFLSS SLVVGNGHYKSSEPHGSVLLPARSIQDIRRERMAGAAAARVVTVPSTAAV SPSNSTRSFTSLRLHDLLGRIQDTHRNRSSSSNKSSSNSNSSSSRCTQGK HQEGAIGQPHLLQSLSSEQLKKACSFLTVPPQDLRVSDMSALLSEYRCLA IVAGECLNLLQEQRR* back to topmRNA from alignment at chr6:810155..812285- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02820.1 ID=NO06G02820.1|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp|location=Sequence derived from alignment at chr6:810155..812285- (Nannochloropsis oceanica) ACAGGCAGGGCTATCGTGATCCAGCCGCCCATGTCGTCAGTCTAGTCAGC
CGCTTTCCCCCTCGAATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGC
TGCCCGCCGCCGTGCCCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGT
GGATCCAGGATGAAGATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATG
GAGAAGCAGCAACAACAGCGGCAGCAGCAGGAGCAGCCACCATCACAAAC
GAAGAAGAGGGGCACTCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAG
AGGGCGTGATGCCCATCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTC
GCAGGAGAAGGAGACAGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTC
AGCCGCGGAAGGAGACGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGG
AGGAAGCTCCGCCCTTGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTG
TCGTACGATGATTTCGTACAGCTTTTGGCTCATCCTGGATCAATTGAAGT
GGTGAAATCCATGCAGCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGC
GACGCGAGGGGTTGTCCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGT
CCGCAAGGACAGCATCTGCACGCATTTATCGAAAGTTTGCGATTAGAAAT
GTGCAAGAGTGGGGTGTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCT
CCTCTCCAGGCTCCTCCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGG
GATGGGTTGAGAGAGCACCTCGAAAAGTTCCTCGTTATCAAACTTTACCG
CTACCTTTTCACCGAAGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCG
CCTGGCAAGCCCGCCTTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTC
GAAGTCCGCTCCCTCATCTCCTCCTTGCCCTCCATATCCATCTCCACCTC
TCTAGCTCCCGCCATCGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCC
CCGTGGATATAATGTCTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGC
GGGCTCGTTGCAGCTCACCCTCCCGGAACCGGCCTACCAGGTGCGGATGA
ATTCCTGCCTGCCATGATTTTAATGATCAAAGAGAGTAAACCTTCCGGCT
TGAGGAAAGCATTGGACATAGTGCAGTGTTACCGCTATCCGCCGCGATTG
CAGGTGTCCGAGCCGGCGTATGTCTTTACGAATGTGCTATCTGCCGTCCA
TTTCCTGGAGACAGCGAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGT
TCGAAAGATCCTTGGTAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAG
GGTGTGTTCGAAACAAGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGT
AACGGGGGAAGAGGAGGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGT
CTGCACTTAAGGACATGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCT
TCCTTCTTGTCTTCCTCCCTCGTTGTCGGTAACGGTCATTACAAGAGCAG
CGAACCCCATGGGTCAGTTTTGCTGCCAGCACGCAGTATTCAAGACATAA
GACGAGAACGGATGGCTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCA
AGCACAGCAGCTGTCTCTCCCTCCAATTCTACTCGATCTTTTACTTCCTT
GCGTCTCCACGACTTGCTTGGTCGCATTCAAGACACACATAGGAATCGCA
GCAGTAGTAGCAACAAAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGA
TGCACGCAGGGCAAGCACCAAGAAGGAGCAATAGGACAACCCCACCTCCT
CCAATCCCTCTCCTCCGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTG
TCCCTCCGCAGGACTTGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAG
TATAGATGCCTCGCCATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGA
GCAAAGAAGGTAGGTTGATTTAAACGTAATCTTTAGGTAATGAAAAAGTG
AGAAACGATAAAGTAAAAAAAGCACACGAGA back to topCoding sequence (CDS) from alignment at chr6:810155..812285- >NO06G02820.1 ID=NO06G02820.1|Name=NO06G02820.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr6:810155..812285- (Nannochloropsis oceanica) ATGATGACGCCTGCCCTTGCCGTCTCTAGGGCCGCTGCCCGCCGCCGTGC CCTGCTTCTCGAAGCCCGCAAGCAGCGCGAGGCGTGGATCCAGGATGAAG ATTATAAGGAGGTGGGTGTGGTGCAAGCCCTGATGGAGAAGCAGCAACAA CAGCGGCAGCAGCAGGAGCAGCCACCATCACAAACGAAGAAGAGGGGCAC TCTCACAGGGCTTTTTGAAGGCATTCCAGGCTTAGAGGGCGTGATGCCCA TCGCGCGGGAGTACGTTGGGTTTTTAAACGAGCTCGCAGGAGAAGGAGAC AGGGAAGCGATCGAATTAGTAAGTGATGCCTCGTCAGCCGCGGAAGGAGA CGGAGAGGACGAGGAAGGCGAAGGAGCACAAGGGGAGGAAGCTCCGCCCT TGCCAGACATAGCTCTCAATGCCTCCGTGTCCTTGTCGTACGATGATTTC GTACAGCTTTTGGCTCATCCTGGATCAATTGAAGTGGTGAAATCCATGCA GCGTTTCGTCACTGCCTTTATCCAAAGCCAAGAGCGACGCGAGGGGTTGT CCGCTCTCCCTCCCTCCTCCCTCTCCACCCCTCGTCCGCAAGGACAGCAT CTGCACGCATTTATCGAAAGTTTGCGATTAGAAATGTGCAAGAGTGGGGT GTGGGCGGCACGGCTGGCAATCGAGGAGAAACGCTCCTCTCCAGGCTCCT CCTCCTCCTTTTCCTCCTCTTCCTCCTCCGCTTGGGATGGGTTGAGAGAG CACCTCGAAAAGTTCCTCGTTATCAAACTTTACCGCTACCTTTTCACCGA AGCTGAAACCCAGACCCTTAGAGATCAAGAAGCCGCCTGGCAAGCCCGCC TTGACTCCCTCGCCTTCCTCGGCCCCGAGCACCTCGAAGTCCGCTCCCTC ATCTCCTCCTTGCCCTCCATATCCATCTCCACCTCTCTAGCTCCCGCCAT CGCCGAATTCAGCCTTGTCCCCTCTTACAAAGCCCCCGTGGATATAATGT CTTGCCTTTTACGTTGCTCTTATCTTCTCTCTCGCGGGCTCGTTGCAGCT CACCCTCCCGGAACCGGCCTACCAGGTGCGGATGAATTCCTGCCTGCCAT GATTTTAATGATCAAAGAGAGTAAACCTTCCGGCTTGAGGAAAGCATTGG ACATAGTGCAGTGTTACCGCTATCCGCCGCGATTGCAGGTGTCCGAGCCG GCGTATGTCTTTACGAATGTGCTATCTGCCGTCCATTTCCTGGAGACAGC GAAGGCGGGTCAGTTGAATATGACGCCTGAGGTGTTCGAAAGATCCTTGG TAGCGTGTAGCAGGAGTATGGGAAGATGGAGGGAGGGTGTGTTCGAAACA AGAGCAGGAGCAGGAGGAGGAGGAGGAGGGGTGGTAACGGGGGAAGAGGA GGAGGGACATGGGGTGGGAGTGTTGCCTGTTTTGTCTGCACTTAAGGACA TGACGCTTAAAGAGGGTACCTCGCTGTCTTCCTCTTCCTTCTTGTCTTCC TCCCTCGTTGTCGGTAACGGTCATTACAAGAGCAGCGAACCCCATGGGTC AGTTTTGCTGCCAGCACGCAGTATTCAAGACATAAGACGAGAACGGATGG CTGGGGCAGCTGCAGCAAGAGTTGTAACTGTGCCAAGCACAGCAGCTGTC TCTCCCTCCAATTCTACTCGATCTTTTACTTCCTTGCGTCTCCACGACTT GCTTGGTCGCATTCAAGACACACATAGGAATCGCAGCAGTAGTAGCAACA AAAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGATGCACGCAGGGCAAG CACCAAGAAGGAGCAATAGGACAACCCCACCTCCTCCAATCCCTCTCCTC CGAGCAGCTTAAGAAGGCCTGCTCCTTTCTAACTGTCCCTCCGCAGGACT TGCGGGTAAGCGATATGTCGGCCCTGCTATCAGAGTATAGATGCCTCGCC ATAGTTGCTGGCGAATGTCTTAATTTGCTGCAAGAGCAAAGAAGGTAG back to top
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