|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:778021..780621 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02760.1 vs.
Match: EWM26279.1 (hypothetical protein Naga_100073g17 [Nannochloropsis gaditana]) HSP 1 Score: 607.8 bits (1566), Expect = 2.200e-170 Identity = 288/355 (81.13%), Postives = 312/355 (87.89%), Query Frame = 0
Query: 1 MVVPKLLPYDVHEPPKGFNSFTAKAHELIPLSAQRAFRDRHAHWFDRAVSVSAVALAARHPKALLRFLALRRSAQVFQYGLESSQQVVELHQCGKQGAPVVIFMHGGAWFSGRPWMYRLIATALNRQGLDVGIVGYGTYKTLPPIPGTLLPDPALEGIGDFSVVLGNVDHQIDDLQHCLEFLMTDPRSPYSIDDTPIFLSGHSSGAHVCSLLLLRQALGLPGHATLPRPIAGFIGLSGVYDVAAHHEYEARRGVHEISGMGPCNGGLAGFHRNSPTTLAGMLTAEQAEKLPPCLILHGVEDETVPFTSSLVFANCLEGHGGRVKTGWLPGMDHQGTVAVLMMGRDSEVERQIAAF 356
MVVPKLLPY VHEPP GF+S TAKAH +IPLSAQRAFRDRHAHWFDRAVSVSAVAL RHPKALLRFL+LRR+AQ F YG ES VELH+CGK GAP+V+FMHGGAWFSGRPWMYRLI+TALNR+G+DVGIVGYGTYKTLPPIPGT LPDPAL+G D +VVLG+VDHQ+DDLQHCLEFLM DPRSPYS D PIFLSGHSSGAH+CSL LLR+ LG PG+ TLPR + GF+GLSGVYDVA HHEYEARRGVHEISGMG CNGGLA FHRNSPTTLAGMLT EQA LPP LI+HGV+DETVPFT+SLVFA+ L GHGGRVKT WLP MDHQGTVA LMM DSEVER I+AF
Sbjct: 1 MVVPKLLPYAVHEPPTGFDSLTAKAHGIIPLSAQRAFRDRHAHWFDRAVSVSAVALGIRHPKALLRFLSLRRTAQTFHYGHESPDHFVELHRCGKPGAPLVVFMHGGAWFSGRPWMYRLISTALNRRGMDVGIVGYGTYKTLPPIPGTRLPDPALDGTADPAVVLGHVDHQVDDLQHCLEFLMLDPRSPYSADQVPIFLSGHSSGAHICSLFLLRETLGAPGYNTLPRRVQGFVGLSGVYDVAVHHEYEARRGVHEISGMGACNGGLARFHRNSPTTLAGMLTPEQAGALPPFLIVHGVDDETVPFTNSLVFASNLAGHGGRVKTAWLPEMDHQGTVAALMMHTDSEVERHISAF 355
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02760.1 ID=NO06G02760.1|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp GAATTTGGCAACGGACAGGACAGATCGCTTTTTTTTGGTCTTTTCACTCG CGCGTTTCCTTGTGATTTCGTCTTGTGTCACCACTTACAGGTGTGTGCCA CGGCGCCTCTTCTTTCCCTTCCACGTCCACTCCTTCGCAGCAGGCAGCGG CATTTGGTAGTCCACCGATCTTGTCGTCACTGTACTCACCTTCTCCATCG TACCCACGCACCCTACCCGTCTACAGCCCCGCCTTGTCTACAGTTTTCTG TGCGCGTCAGCACTCGCCGAACAACGAGCAAGCCAAGCAGGAACAAAAGC AATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGG GCTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCA CAGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTC GGTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCT TCCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCG TCTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGT GGTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGT ATCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATT GTGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTT GCCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAA ATGTGGACCATCAAATCGACGACCTGCAGCACTGTCTGGAATTCCTCATG ACGGACCCTCGCAGCCCCTATAGCATTGATGACACGCCCATTTTCCTTTC CGGACACTCGTCCGGGGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAG CCCTGGGGCTACCTGGTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTC ATCGGACTTAGTGGTGTGTACGACGTGGCGGCCCACCACGAGTATGAAGC ACGGAGAGGAGTCCACGAAATTTCGGGCATGGGCCCATGTAACGGTGGCC TGGCCGGTTTCCATCGCAATTCCCCGACGACCTTGGCGGGAATGTTAACG GCTGAACAGGCGGAGAAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGA GGATGAGACCGTGCCGTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGG AGGGACATGGAGGGAGGGTGAAGACGGGATGGCTCCCTGGGATGGACCAC CAGGGGACGGTGGCAGTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCG GCAGATAGCCGCGTTTTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAG GAGTGGCGCCCATGGCGAGGTTGTAAAGAGAAACGAGAAAGATACCATGA CATATAGAGCAGAGAGGGATTGTTTTGAGGTGGATAAATCAAACGTTTGG AATGCAATGAAAGTAAGAATGGATGAAGAAGTAGCTTTGCATGTGCGTGT GCGTATATATACATTTCGCTTCTTGGAATGAGGAATGACACCGCCATTTA ATCCAGGGGGAATAACGCATGAGAGAGAAAGAGCATTTTCAAACATGGGA GATTAGAGGGCAGACAAAGAGCAAGGGAGAAGGACGATGAAGAGGGAGAC CCACTCAAAGGGCAGATGAAGCACGTCCCTCATCTCGTGGTGAGCGAATT GTCAGAGCCTTCCCCGAGGCCACGTCGAAGCTGCGGCACATATGCGGCAC ATACGTTGGCAGAATATCAAGTCACGTATCTTTGCTCCGTGCTGCCAACT CGGGTGCCTAGACCATCGCCTCCCACCTAACTTTGCATGACTTTGTCCAA AATCGAACACCTCCCCAAGGCAGCTCCGTTCTTCATCAGCAGAGCATCTT AAGCCCAATCCTACCACTGTACCGTCCGCCCATGCCACCTCTTCAACACA CGCGAGGAGAAGCATCTACCATTTCATGCATTGCCTGACCTCGACATTCA GCCTGCCATCTGACAGCCGGCTTCCCTAGGCCCGCCTCGCGCTAGTGCAG AAGCATGTCGTCACCATTGCAGAAGCAAGCGATTCATGCCACCGCGTCCA ACTCCACGCCTGTAGTAGATGTGGACGGCGAGTCCTTACTTAATTTTTCC CTGTCAAACATTTCCATAGCCACGAACGCATTTACCAGAATTTGATGAAA GACGCCATAAGAGTACCCCGATATCTGCCCCCTTCGAAATGTGCCCCCCC CCCCTTGAAAACTTCACGGGATCCGATCAAGAAACAACAACAACGACGAC GGTAAGAAACAGTGTCGGTAACATAAATATTGAAAGTGCCACTAAAAATT CCTTGTGTGTGGTCGA back to topprotein sequence of NO06G02760.1 >NO06G02760.1-protein ID=NO06G02760.1-protein|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp MVVPKLLPYDVHEPPKGFNSFTAKAHELIPLSAQRAFRDRHAHWFDRAVS VSAVALAARHPKALLRFLALRRSAQVFQYGLESSQQVVELHQCGKQGAPV VIFMHGGAWFSGRPWMYRLIATALNRQGLDVGIVGYGTYKTLPPIPGTLL PDPALEGIGDFSVVLGNVDHQIDDLQHCLEFLMTDPRSPYSIDDTPIFLS GHSSGAHVCSLLLLRQALGLPGHATLPRPIAGFIGLSGVYDVAAHHEYEA RRGVHEISGMGPCNGGLAGFHRNSPTTLAGMLTAEQAEKLPPCLILHGVE DETVPFTSSLVFANCLEGHGGRVKTGWLPGMDHQGTVAVLMMGRDSEVER QIAAFSGGKGGRKGEEGVAPMARL* back to topmRNA from alignment at chr6:778021..780621+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02760.1 ID=NO06G02760.1|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp|location=Sequence derived from alignment at chr6:778021..780621+ (Nannochloropsis oceanica) GAATTTGGCAACGGACAGGACAGATCGCTTTTTTTTGGTCTTTTCACTCG
CGCGTTTCCTTGTGATTTCGTCTTGTGTCACCACTTACAGGTGTGTGCCA
CGGCGCCTCTTCTTTCCCTTCCACGTCCACTCCTTCGCAGCAGGCAGCGG
CATTTGGTAGTCCACCGATCTTGTCGTCACTGTACTCACCTTCTCCATCG
TACCCACGCACCCTACCCGTCTACAGCCCCGCCTTGTCTACAGTTTTCTG
TGCGCGTCAGCACTCGCCGAACAACGAGCAAGCCAAGCAGGAACAAAAGC
AATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGG
GCTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCA
CAGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTC
GGTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCT
TCCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCG
TCTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGT
GGTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGT
ATCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATT
GTGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTT
GCCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAA
ATGTGGTAAGTCTCTCTCTTCCTTCGTCACTTTTCTTCCTCCCTCCCTTA
GAAATTCATCCCCTCCATTCTTTCGTTTCCTGCACTTTAATGTGCCAATA
CCCTCTCTACCCTTGCTCTTACTCCTGCTCCTTTCCCCGTCCTTCTCACT
ACCCACCCTGCCCTTTGCTTTCCCCCCAATCAAATCACAGGACCATCAAA
TCGACGACCTGCAGCACTGTCTGGAATTCCTCATGACGGACCCTCGCAGC
CCCTATAGCATTGATGACACGCCCATTTTCCTTTCCGGACACTCGTCCGG
GGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAGCCCTGGGGCTACCTG
GTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTCATCGGACTTAGTGGT
GTGTACGACGTGGCGGCCCACCACGAGTATGAAGCACGGAGAGGAGTCCA
CGAAATTTCGGGCATGGGCCCATGTAACGGTGGCCTGGCCGGTTTCCATC
GCAATTCCCCGACGACCTTGGCGGGAATGTTAACGGCTGAACAGGCGGAG
AAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGAGGATGAGACCGTGCC
GTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGGAGGGACATGGAGGGA
GGGTGAAGACGGGATGGCTCCCTGGGATGGACCACCAGGGGACGGTGGCA
GTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCGGCAGATAGCCGCGTT
TTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAGGAGTGGCGCCCATGG
CGAGGTTGTAAAGAGAAACGAGAAAGATACCATGACATATAGAGCAGAGA
GGGATTGTTTTGAGGTGGATAAATCAAACGTTTGGAATGCAATGAAAGTA
AGAATGGATGAAGAAGTAGCTTTGCATGTGCGTGTGCGTATATATACATT
TCGCTTCTTGGAATGAGGAATGACACCGCCATTTAATCCAGGGGGAATAA
CGCATGAGAGAGAAAGAGCATTTTCAAACATGGGAGATTAGAGGGCAGAC
AAAGAGCAAGGGAGAAGGACGATGAAGAGGGAGACCCACTCAAAGGGCAG
ATGAAGCACGTCCCTCATCTCGTGGTGAGCGAATTGTCAGAGCCTTCCCC
GAGGCCACGTCGAAGCTGCGGCACATATGCGGCACATACGTTGGCAGAAT
ATCAAGTCACGTATCTTTGCTCCGTGCTGCCAACTCGGGTGCCTAGACCA
TCGCCTCCCACCTAACTTTGCATGACTTTGTCCAAAATCGAACACCTCCC
CAAGGCAGCTCCGTTCTTCATCAGCAGAGCATCTTAAGCCCAATCCTACC
ACTGTACCGTCCGCCCATGCCACCTCTTCAACACACGCGAGGAGAAGCAT
CTACCATTTCATGCATTGCCTGACCTCGACATTCAGCCTGCCATCTGACA
GCCGGCTTCCCTAGGCCCGCCTCGCGCTAGTGCAGAAGCATGTCGTCACC
ATTGCAGAAGCAAGCGATTCATGCCACCGCGTCCAACTCCACGCCTGTAG
TAGATGTGGACGGCGAGTCCTTACTTAATTTTTCCCTGTCAAACATTTCC
ATAGCCACGAACGCATTTACCAGAATTTGATGAAAGACGCCATAAGAGTA
CCCCGATATCTGCCCCCTTCGAAATGTGCCCCCCCCCCCTTGAAAACTTC
ACGGGATCCGATCAAGAAACAACAACAACGACGACGGTAAGAAACAGTGT
CGGTAACATAAATATTGAAAGTGCCACTAAAAATTCCTTGTGTGTGGTCG
A back to topCoding sequence (CDS) from alignment at chr6:778021..780621+ >NO06G02760.1 ID=NO06G02760.1|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr6:778021..780621+ (Nannochloropsis oceanica) ATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGGG CTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCAC AGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTCG GTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCTT CCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCGT CTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGTG GTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGTA TCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATTG TGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTTG CCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAAA TGTGGACCATCAAATCGACGACCTGCAGCACTGTCTGGAATTCCTCATGA CGGACCCTCGCAGCCCCTATAGCATTGATGACACGCCCATTTTCCTTTCC GGACACTCGTCCGGGGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAGC CCTGGGGCTACCTGGTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTCA TCGGACTTAGTGGTGTGTACGACGTGGCGGCCCACCACGAGTATGAAGCA CGGAGAGGAGTCCACGAAATTTCGGGCATGGGCCCATGTAACGGTGGCCT GGCCGGTTTCCATCGCAATTCCCCGACGACCTTGGCGGGAATGTTAACGG CTGAACAGGCGGAGAAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGAG GATGAGACCGTGCCGTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGGA GGGACATGGAGGGAGGGTGAAGACGGGATGGCTCCCTGGGATGGACCACC AGGGGACGGTGGCAGTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCGG CAGATAGCCGCGTTTTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAGG AGTGGCGCCCATGGCGAGGTTGTAA back to top
|