NO06G02760.1, NO06G02760.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02760.1
Unique NameNO06G02760.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2416
Alignment locationchr6:778021..780621 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:778021..780621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02760.1 vs.
Match: EWM26279.1 (hypothetical protein Naga_100073g17 [Nannochloropsis gaditana])

HSP 1 Score: 607.8 bits (1566), Expect = 2.200e-170
Identity = 288/355 (81.13%), Postives = 312/355 (87.89%), Query Frame = 0
Query:    1 MVVPKLLPYDVHEPPKGFNSFTAKAHELIPLSAQRAFRDRHAHWFDRAVSVSAVALAARHPKALLRFLALRRSAQVFQYGLESSQQVVELHQCGKQGAPVVIFMHGGAWFSGRPWMYRLIATALNRQGLDVGIVGYGTYKTLPPIPGTLLPDPALEGIGDFSVVLGNVDHQIDDLQHCLEFLMTDPRSPYSIDDTPIFLSGHSSGAHVCSLLLLRQALGLPGHATLPRPIAGFIGLSGVYDVAAHHEYEARRGVHEISGMGPCNGGLAGFHRNSPTTLAGMLTAEQAEKLPPCLILHGVEDETVPFTSSLVFANCLEGHGGRVKTGWLPGMDHQGTVAVLMMGRDSEVERQIAAF 356
            MVVPKLLPY VHEPP GF+S TAKAH +IPLSAQRAFRDRHAHWFDRAVSVSAVAL  RHPKALLRFL+LRR+AQ F YG ES    VELH+CGK GAP+V+FMHGGAWFSGRPWMYRLI+TALNR+G+DVGIVGYGTYKTLPPIPGT LPDPAL+G  D +VVLG+VDHQ+DDLQHCLEFLM DPRSPYS D  PIFLSGHSSGAH+CSL LLR+ LG PG+ TLPR + GF+GLSGVYDVA HHEYEARRGVHEISGMG CNGGLA FHRNSPTTLAGMLT EQA  LPP LI+HGV+DETVPFT+SLVFA+ L GHGGRVKT WLP MDHQGTVA LMM  DSEVER I+AF
Sbjct:    1 MVVPKLLPYAVHEPPTGFDSLTAKAHGIIPLSAQRAFRDRHAHWFDRAVSVSAVALGIRHPKALLRFLSLRRTAQTFHYGHESPDHFVELHRCGKPGAPLVVFMHGGAWFSGRPWMYRLISTALNRRGMDVGIVGYGTYKTLPPIPGTRLPDPALDGTADPAVVLGHVDHQVDDLQHCLEFLMLDPRSPYSADQVPIFLSGHSSGAHICSLFLLRETLGAPGYNTLPRRVQGFVGLSGVYDVAVHHEYEARRGVHEISGMGACNGGLARFHRNSPTTLAGMLTPEQAGALPPFLIVHGVDDETVPFTNSLVFASNLAGHGGRVKTAWLPEMDHQGTVAALMMHTDSEVERHISAF 355          
The following BLAST results are available for this feature:
BLAST of NO06G02760.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26279.12.200e-17081.13hypothetical protein Naga_100073g17 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02760NO06G02760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02760.1NO06G02760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02760.1.cds1NO06G02760.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02760.1.cds2NO06G02760.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02760.1 ID=NO06G02760.1|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp
GAATTTGGCAACGGACAGGACAGATCGCTTTTTTTTGGTCTTTTCACTCG
CGCGTTTCCTTGTGATTTCGTCTTGTGTCACCACTTACAGGTGTGTGCCA
CGGCGCCTCTTCTTTCCCTTCCACGTCCACTCCTTCGCAGCAGGCAGCGG
CATTTGGTAGTCCACCGATCTTGTCGTCACTGTACTCACCTTCTCCATCG
TACCCACGCACCCTACCCGTCTACAGCCCCGCCTTGTCTACAGTTTTCTG
TGCGCGTCAGCACTCGCCGAACAACGAGCAAGCCAAGCAGGAACAAAAGC
AATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGG
GCTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCA
CAGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTC
GGTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCT
TCCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCG
TCTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGT
GGTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGT
ATCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATT
GTGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTT
GCCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAA
ATGTGGACCATCAAATCGACGACCTGCAGCACTGTCTGGAATTCCTCATG
ACGGACCCTCGCAGCCCCTATAGCATTGATGACACGCCCATTTTCCTTTC
CGGACACTCGTCCGGGGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAG
CCCTGGGGCTACCTGGTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTC
ATCGGACTTAGTGGTGTGTACGACGTGGCGGCCCACCACGAGTATGAAGC
ACGGAGAGGAGTCCACGAAATTTCGGGCATGGGCCCATGTAACGGTGGCC
TGGCCGGTTTCCATCGCAATTCCCCGACGACCTTGGCGGGAATGTTAACG
GCTGAACAGGCGGAGAAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGA
GGATGAGACCGTGCCGTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGG
AGGGACATGGAGGGAGGGTGAAGACGGGATGGCTCCCTGGGATGGACCAC
CAGGGGACGGTGGCAGTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCG
GCAGATAGCCGCGTTTTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAG
GAGTGGCGCCCATGGCGAGGTTGTAAAGAGAAACGAGAAAGATACCATGA
CATATAGAGCAGAGAGGGATTGTTTTGAGGTGGATAAATCAAACGTTTGG
AATGCAATGAAAGTAAGAATGGATGAAGAAGTAGCTTTGCATGTGCGTGT
GCGTATATATACATTTCGCTTCTTGGAATGAGGAATGACACCGCCATTTA
ATCCAGGGGGAATAACGCATGAGAGAGAAAGAGCATTTTCAAACATGGGA
GATTAGAGGGCAGACAAAGAGCAAGGGAGAAGGACGATGAAGAGGGAGAC
CCACTCAAAGGGCAGATGAAGCACGTCCCTCATCTCGTGGTGAGCGAATT
GTCAGAGCCTTCCCCGAGGCCACGTCGAAGCTGCGGCACATATGCGGCAC
ATACGTTGGCAGAATATCAAGTCACGTATCTTTGCTCCGTGCTGCCAACT
CGGGTGCCTAGACCATCGCCTCCCACCTAACTTTGCATGACTTTGTCCAA
AATCGAACACCTCCCCAAGGCAGCTCCGTTCTTCATCAGCAGAGCATCTT
AAGCCCAATCCTACCACTGTACCGTCCGCCCATGCCACCTCTTCAACACA
CGCGAGGAGAAGCATCTACCATTTCATGCATTGCCTGACCTCGACATTCA
GCCTGCCATCTGACAGCCGGCTTCCCTAGGCCCGCCTCGCGCTAGTGCAG
AAGCATGTCGTCACCATTGCAGAAGCAAGCGATTCATGCCACCGCGTCCA
ACTCCACGCCTGTAGTAGATGTGGACGGCGAGTCCTTACTTAATTTTTCC
CTGTCAAACATTTCCATAGCCACGAACGCATTTACCAGAATTTGATGAAA
GACGCCATAAGAGTACCCCGATATCTGCCCCCTTCGAAATGTGCCCCCCC
CCCCTTGAAAACTTCACGGGATCCGATCAAGAAACAACAACAACGACGAC
GGTAAGAAACAGTGTCGGTAACATAAATATTGAAAGTGCCACTAAAAATT
CCTTGTGTGTGGTCGA
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protein sequence of NO06G02760.1

>NO06G02760.1-protein ID=NO06G02760.1-protein|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MVVPKLLPYDVHEPPKGFNSFTAKAHELIPLSAQRAFRDRHAHWFDRAVS
VSAVALAARHPKALLRFLALRRSAQVFQYGLESSQQVVELHQCGKQGAPV
VIFMHGGAWFSGRPWMYRLIATALNRQGLDVGIVGYGTYKTLPPIPGTLL
PDPALEGIGDFSVVLGNVDHQIDDLQHCLEFLMTDPRSPYSIDDTPIFLS
GHSSGAHVCSLLLLRQALGLPGHATLPRPIAGFIGLSGVYDVAAHHEYEA
RRGVHEISGMGPCNGGLAGFHRNSPTTLAGMLTAEQAEKLPPCLILHGVE
DETVPFTSSLVFANCLEGHGGRVKTGWLPGMDHQGTVAVLMMGRDSEVER
QIAAFSGGKGGRKGEEGVAPMARL*
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mRNA from alignment at chr6:778021..780621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02760.1 ID=NO06G02760.1|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp|location=Sequence derived from alignment at chr6:778021..780621+ (Nannochloropsis oceanica)
GAATTTGGCAACGGACAGGACAGATCGCTTTTTTTTGGTCTTTTCACTCG CGCGTTTCCTTGTGATTTCGTCTTGTGTCACCACTTACAGGTGTGTGCCA CGGCGCCTCTTCTTTCCCTTCCACGTCCACTCCTTCGCAGCAGGCAGCGG CATTTGGTAGTCCACCGATCTTGTCGTCACTGTACTCACCTTCTCCATCG TACCCACGCACCCTACCCGTCTACAGCCCCGCCTTGTCTACAGTTTTCTG TGCGCGTCAGCACTCGCCGAACAACGAGCAAGCCAAGCAGGAACAAAAGC AATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGG GCTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCA CAGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTC GGTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCT TCCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCG TCTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGT GGTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGT ATCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATT GTGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTT GCCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAA ATGTGGTAAGTCTCTCTCTTCCTTCGTCACTTTTCTTCCTCCCTCCCTTA GAAATTCATCCCCTCCATTCTTTCGTTTCCTGCACTTTAATGTGCCAATA CCCTCTCTACCCTTGCTCTTACTCCTGCTCCTTTCCCCGTCCTTCTCACT ACCCACCCTGCCCTTTGCTTTCCCCCCAATCAAATCACAGGACCATCAAA TCGACGACCTGCAGCACTGTCTGGAATTCCTCATGACGGACCCTCGCAGC CCCTATAGCATTGATGACACGCCCATTTTCCTTTCCGGACACTCGTCCGG GGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAGCCCTGGGGCTACCTG GTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTCATCGGACTTAGTGGT GTGTACGACGTGGCGGCCCACCACGAGTATGAAGCACGGAGAGGAGTCCA CGAAATTTCGGGCATGGGCCCATGTAACGGTGGCCTGGCCGGTTTCCATC GCAATTCCCCGACGACCTTGGCGGGAATGTTAACGGCTGAACAGGCGGAG AAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGAGGATGAGACCGTGCC GTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGGAGGGACATGGAGGGA GGGTGAAGACGGGATGGCTCCCTGGGATGGACCACCAGGGGACGGTGGCA GTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCGGCAGATAGCCGCGTT TTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAGGAGTGGCGCCCATGG CGAGGTTGTAAAGAGAAACGAGAAAGATACCATGACATATAGAGCAGAGA GGGATTGTTTTGAGGTGGATAAATCAAACGTTTGGAATGCAATGAAAGTA AGAATGGATGAAGAAGTAGCTTTGCATGTGCGTGTGCGTATATATACATT TCGCTTCTTGGAATGAGGAATGACACCGCCATTTAATCCAGGGGGAATAA CGCATGAGAGAGAAAGAGCATTTTCAAACATGGGAGATTAGAGGGCAGAC AAAGAGCAAGGGAGAAGGACGATGAAGAGGGAGACCCACTCAAAGGGCAG ATGAAGCACGTCCCTCATCTCGTGGTGAGCGAATTGTCAGAGCCTTCCCC GAGGCCACGTCGAAGCTGCGGCACATATGCGGCACATACGTTGGCAGAAT ATCAAGTCACGTATCTTTGCTCCGTGCTGCCAACTCGGGTGCCTAGACCA TCGCCTCCCACCTAACTTTGCATGACTTTGTCCAAAATCGAACACCTCCC CAAGGCAGCTCCGTTCTTCATCAGCAGAGCATCTTAAGCCCAATCCTACC ACTGTACCGTCCGCCCATGCCACCTCTTCAACACACGCGAGGAGAAGCAT CTACCATTTCATGCATTGCCTGACCTCGACATTCAGCCTGCCATCTGACA GCCGGCTTCCCTAGGCCCGCCTCGCGCTAGTGCAGAAGCATGTCGTCACC ATTGCAGAAGCAAGCGATTCATGCCACCGCGTCCAACTCCACGCCTGTAG TAGATGTGGACGGCGAGTCCTTACTTAATTTTTCCCTGTCAAACATTTCC ATAGCCACGAACGCATTTACCAGAATTTGATGAAAGACGCCATAAGAGTA CCCCGATATCTGCCCCCTTCGAAATGTGCCCCCCCCCCCTTGAAAACTTC ACGGGATCCGATCAAGAAACAACAACAACGACGACGGTAAGAAACAGTGT CGGTAACATAAATATTGAAAGTGCCACTAAAAATTCCTTGTGTGTGGTCG A
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Coding sequence (CDS) from alignment at chr6:778021..780621+

>NO06G02760.1 ID=NO06G02760.1|Name=NO06G02760.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr6:778021..780621+ (Nannochloropsis oceanica)
ATGGTAGTCCCCAAGCTCTTGCCATACGACGTCCACGAGCCGCCCAAGGG
CTTCAACTCTTTCACCGCCAAGGCCCATGAGCTAATTCCCTTGAGCGCAC
AGCGGGCCTTCCGCGATCGGCATGCTCATTGGTTTGATCGGGCCGTGTCG
GTCTCCGCCGTTGCCTTGGCGGCTCGCCACCCGAAGGCCCTGCTTCGCTT
CCTGGCGCTGCGTCGCTCGGCACAAGTCTTTCAGTACGGCCTCGAGTCGT
CTCAGCAGGTCGTCGAGCTGCATCAATGCGGGAAGCAAGGCGCGCCTGTG
GTGATTTTCATGCACGGTGGGGCGTGGTTCAGCGGTCGGCCGTGGATGTA
TCGCTTGATTGCGACGGCCCTGAATCGACAAGGGTTGGACGTAGGCATTG
TGGGCTATGGGACTTACAAAACCTTGCCCCCCATACCGGGTACGCTGTTG
CCTGACCCGGCTTTGGAAGGGATAGGCGATTTTTCCGTGGTGCTAGGAAA
TGTGGACCATCAAATCGACGACCTGCAGCACTGTCTGGAATTCCTCATGA
CGGACCCTCGCAGCCCCTATAGCATTGATGACACGCCCATTTTCCTTTCC
GGACACTCGTCCGGGGCGCATGTCTGTAGCCTCTTGCTCCTCCGCCAAGC
CCTGGGGCTACCTGGTCATGCCACCCTCCCTCGGCCCATCGCGGGTTTCA
TCGGACTTAGTGGTGTGTACGACGTGGCGGCCCACCACGAGTATGAAGCA
CGGAGAGGAGTCCACGAAATTTCGGGCATGGGCCCATGTAACGGTGGCCT
GGCCGGTTTCCATCGCAATTCCCCGACGACCTTGGCGGGAATGTTAACGG
CTGAACAGGCGGAGAAGTTGCCGCCGTGTTTGATATTGCATGGGGTGGAG
GATGAGACCGTGCCGTTCACGAGTTCGTTAGTGTTTGCGAATTGTTTGGA
GGGACATGGAGGGAGGGTGAAGACGGGATGGCTCCCTGGGATGGACCACC
AGGGGACGGTGGCAGTGCTGATGATGGGGAGGGACTCGGAGGTGGAGCGG
CAGATAGCCGCGTTTTCGGGGGGGAAAGGAGGGAGGAAGGGGGAGGAAGG
AGTGGCGCCCATGGCGAGGTTGTAA
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Synonyms
Publications