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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:774424..777798 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02750.1 vs.
Match: XP_004347588.2 (hypothetical protein CAOG_04837 [Capsaspora owczarzaki ATCC 30864]; KJE94153.1 hypothetical protein CAOG_004837 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 75.9 bits (185), Expect = 6.300e-10 Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 0
Query: 402 RRYCASCGVQRMPLRTHHCKECRRCVSRLDHHSLFVGNCIGAGNHLSFVLFLFFQSLHLSLALLLLFLLDLPS 475
R +CA+CG QR PLRTHHC C RC++R DHH FVG CIG NH F+ FL F + + +L F L +P+
Sbjct: 114 RTFCAACGQQR-PLRTHHCSACNRCIARRDHHCFFVGTCIGQENHRYFLSFLAFSWMACTWVAVLTFCLPIPT 185
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02750.1 ID=NO06G02750.1|Name=NO06G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=3201bp
ACATCAGAGAAGAGCGAGAACAGCACCCTGTAGAGATGACATACTTTGCG
TCCATATCTCGCTTCGTCCCGGTGCCCTCATCCAGCCGGCGGCGGCGGCC
ACGTCCACCAAATAGCAGTAGCAGCAGCACCCGCTCCTGTTGGCGCTGGT
GCCCATCTCCCTCACAATTTGGTTTAGCCTGCAGCTTCTTAGGCCGCGTG
ATAGCTCATCCTTGCCTTATTACAAGTGCGTTATTACCGACAAGCAGCAG
CAGCAGTAATTTAAGCCCCGGCTGTAGGCTCAGCCAGTACTTGACCATAA
GCGGGGCCTACCTTAAGTATCTCTGCAGAGCCCTGGGACCAGACCCGGAC
GTGGCACTGCCAGCACCGCCGAGCAACAACAGCCAGCCATCTCTCTCCTC
ATCGTCATTATGCCACTGCTCCTCTGTCTCGACAATCGCACCTCTACGCA
CTGAAGCCCAATTGTACGCCTGGGAGCAGCAACGTCGTTGGCGCGCTTGG
ATGCTGATTGCCCGGCATTGGGGTGGAACGATAGTGTTGAACCTGATGTT
ACTCCGCGATTCACGGTTTTGGACGCTTGTAGAGGGGATGTTGGATCTTT
TTTATACGTCCATGGTGATGTCGATGGTATTTTATGGGGTTGTTGCCTTA
TCCAACCCCGGATATCTCCCTCTTCATTTTCCGGTTCAAGAAGAGGAGAA
GGCAGCGAATGAGGACAAGCAGCACCGCAATGGACGAGAAGGAGCAGAGG
AAAGGGAGAAAAAGGAGGAAGAGCAGGATGATGATGATGATGATGATAAT
CATAATGCAAATGAGGAGGAGAAGCAAAAACAGCTGCAGCAAGAGGTGCT
GTTGCGGGAGGAGGGCCGTGATGCTGTTTGTCAGACGGAGGAGAAAGAAA
GAAAGCCTCGCCCGCGCATGGCTTCTGGAGCAGGTGATTTGGACATAATT
GAAGAGAAAGATGGGCATGAGGAGGCAACTGATGAACTGGCAGGGGAGGA
GGAGGAGAAAGAAGAGAACGATGAAGCAGAGTTGTGTGCTCACTTGGGCG
AGGGTGCATCTTTGACAGGTTCTGACGAGAGGGAGGCAAGGGGGGAGGAA
GACGATCTCGAATCTGATTCGGAATCTTTGCTACTGGAATTGGTGGAGGC
TACTTCCACCCCAGCAATAAGTAGTGCGACGACAAGAGACGGAGCAGGAG
GAGGGGAAGACGGAGAGACTATTAGAAAGTGGCTCCGGCGACGGTACTGC
GCCTCATGCGGCGTACAGCGCATGCCATTGCGAACACATCACTGCAAAGA
GTGCAGAAGGTGTGTGTCTCGGCTGGATCACCATTCTTTGTTTGTGGGAA
ATTGTATCGGCGCGGGCAATCACCTCTCATTCGTCCTTTTCCTCTTCTTC
CAATCCCTTCACCTCTCCCTCGCCCTCCTCCTCCTTTTCCTCTTGGACCT
GCCCTCCCTCCTTTCCCACTACAACTTCGACCGCGGACTCCTTGGTCTTC
TGGGAGGTCTCAGTCAAAATCTGCTTTTGGCCGGCCCACAAGCGCTTGTA
GAAGAGCCCTTTTCCTCCTTTCTCTTCCTCCTCGTTGCAATGTGGTGGTG
CGTGAGTCACGCGGCGCTTTTCGCACAGCTGAAGGTGGTCTGTCTCAACC
TGCTGACGGTGGAGGCACAAGAGGGGGGAGAAAGACTACCCTACCTTGCT
GGAGGCCATAATCCCTTTGATAAAGGTTACTTCGGAAATGCCATCTCATT
CTTGAGCCTCTTCTACCAGTACCACCAAGAGAGACGGACGAAGGAAAGGC
GGACAATGCAAGGGAGGGCAGGGAGAGGTGGTCTGTCTTCATCCTTCTCC
TCGTCTTCCTGGCCGTCTACTGCTGCATTTGCCTTCTCTTCCTCCTTCTC
TTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTACCCTTCCGCCACATTTGCCTCACCGCCAGGCTCAGTCTCCGC
CTTCTCCTCTATCGGCTCCTCCTCCTCTTCACCACACAGCAGCCCTTCCT
CCTCCCCTTGCGACTCTCCCACCGCTGCCCTCCTCTCTTCGTCCTCCATC
AACTCCTTCTCCTTCCGCAGCCTCTCCTCTTCCGCGCTTGGTGCTGCTTC
CTCCGTCCCATCCACTACGCCCTCTTCGTTTTTTACCTACATTCGACATA
AATTCACCCCTTCCTCGGCTGGGATCCGGCAGCAGCAGCGGCATTTGCAC
CCTCCTTCCTTCCCGCTTTTCCCAACTTTTGGGCTTAAGAAGAGTCGACC
TCTTCCCCTTCCTTTGAAGGTTGCCCCTTGAGCAGGTCGACGCGTAGATT
AGATGTGATTCTCGATGGAGTGGTTGATCCACTTTTTTGCTCAAGTCAAC
TTTTAAATTTGATAAGCGCCAGAGCAACGAGACTATGAGGCAGTAAGAGA
TAGGAAATTTGAGTGAAATCGAAGAAGGGAAAATGAGAGAGGACAGAAGT
GAGGTCTAGATAGATGAATACTAAGGGAGAGCAATGTACATTGAGAGAGA
GTGAGAGGCCCAGTTTAGAAAATGCCACCTCCCCTATCCCCCCATCCCCT
CTCTAAATCCCCCCTTACAATCTTCACTCCTCTTTTCATCTATGATAAGA
GGAATTACAAATGTTACAAAAAATGGACGCAACTTTATTTATCAATTCAG
TATTTAATTTACGTGTATTATTCATGAAATACGTTTTTTAAATAATTTAC
CTGGAAAGACTCATGGACACAGACAGCTAACAAAGTGAACTGGAAAGGAA
TCATCACAGACGATTGACGACATTTTGCAACTTGAAAATCACCATGGTCT
GATTTGAGCTCCAACTTTTTGATTATTGAGAGCCACGGATACCCACACAG
AGTCAGAGACAGAGACAGAGACAGAAAGAGTATAGTAGCACTCAAATTCA
CAGCAGCCCAAAACTAGAAGAACTCGACAAGCCCATGCTGTGACATTTTG
GCCCTAAATCAACAACAAAGACAATGAGAAGAAGGAAAACAACAACACGA
GCAGCAGCTGCAGCAACATCAATAGCGACAACTGCAAAAGGTAGAGAAGA
AAAAGGAGGAAGAATTATAAAACGAAAAAAACAAAAACATAAAACAAATG
T back to topprotein sequence of NO06G02750.1 >NO06G02750.1-protein ID=NO06G02750.1-protein|Name=NO06G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=782bp
MTYFASISRFVPVPSSSRRRRPRPPNSSSSSTRSCWRWCPSPSQFGLACS
FLGRVIAHPCLITSALLPTSSSSSNLSPGCRLSQYLTISGAYLKYLCRAL
GPDPDVALPAPPSNNSQPSLSSSSLCHCSSVSTIAPLRTEAQLYAWEQQR
RWRAWMLIARHWGGTIVLNLMLLRDSRFWTLVEGMLDLFYTSMVMSMVFY
GVVALSNPGYLPLHFPVQEEEKAANEDKQHRNGREGAEEREKKEEEQDDD
DDDDNHNANEEEKQKQLQQEVLLREEGRDAVCQTEEKERKPRPRMASGAG
DLDIIEEKDGHEEATDELAGEEEEKEENDEAELCAHLGEGASLTGSDERE
ARGEEDDLESDSESLLLELVEATSTPAISSATTRDGAGGGEDGETIRKWL
RRRYCASCGVQRMPLRTHHCKECRRCVSRLDHHSLFVGNCIGAGNHLSFV
LFLFFQSLHLSLALLLLFLLDLPSLLSHYNFDRGLLGLLGGLSQNLLLAG
PQALVEEPFSSFLFLLVAMWWCVSHAALFAQLKVVCLNLLTVEAQEGGER
LPYLAGGHNPFDKGYFGNAISFLSLFYQYHQERRTKERRTMQGRAGRGGL
SSSFSSSSWPSTAAFAFSSSFSSSFSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSYPSATFASPPGSVSAFSSIGSSSSSPHSSPSSSPCDSPTAALL
SSSSINSFSFRSLSSSALGAASSVPSTTPSSFFTYIRHKFTPSSAGIRQQ
QRHLHPPSFPLFPTFGLKKSRPLPLPLKVAP* back to topmRNA from alignment at chr6:774424..777798- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02750.1 ID=NO06G02750.1|Name=NO06G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=3375bp|location=Sequence derived from alignment at chr6:774424..777798- (Nannochloropsis oceanica)
ACATCAGAGAAGAGCGAGAACAGCACCCTGTAGAGATGACATACTTTGCG
TCCATATCTCGCTTCGTCCCGGTGCCCTCATCCAGCCGGCGGCGGCGGCC
ACGTCCACCAAATAGCAGTAGCAGCAGCACCCGCTCCTGTTGGCGCTGGT
GCCCATCTCCCTCACAATTTGGTTTAGCCTGCAGCTTCTTAGGCCGCGTG
ATAGCTCATCCTTGCCTTATTACAAGTGCGTTATTACCGACAAGCAGCAG
CAGCAGTAATTTAAGCCCCGGCTGTAGGCTCAGCCAGTACTTGACCATAA
GCGGGGCCTACCTTAAGTATCTCTGCAGAGCCCTGGGACCAGACCCGGAC
GTGGCACTGCCAGCACCGCCGAGCAACAACAGCCAGCCATCTCTCTCCTC
ATCGTCATTATGCCACTGCTCCTCTGTCTCGACAATCGCACCTCTACGCA
CTGAAGCCCAATTGTACGCCTGGGAGCAGCAACGTCGTTGGCGCGCTTGG
ATGCTGATTGCCCGGCATTGGGGTGGAACGATAGTGTTGAACCTGATGTT
ACTCCGCGATTCACGGTTTTGGACGCTTGTAGAGGGGATGTTGGATCTTT
TTTATACGTCCATGGTGATGTCGATGGTATTTTATGGGGTTGTTGCCTTA
TCCAACCCCGGATATCTCCCTCTTCATTTTCCGGTTCAAGAAGAGGAGAA
GGCAGCGAATGAGGACAAGCAGCACCGCAATGGACGAGAAGGAGCAGAGG
AAAGGGAGAAAAAGGAGGAAGAGCAGGATGATGATGATGATGATGATAAT
CATAATGCAAATGAGGAGGAGAAGCAAAAACAGCTGCAGCAAGAGGTGCT
GTTGCGGGAGGAGGGCCGTGATGCTGTTTGTCAGACGGAGGAGAAAGAAA
GAAAGCCTCGCCCGCGCATGGCTTCTGGAGCAGGTGATTTGGACATAATT
GAAGAGAAAGATGGGCATGAGGAGGCAACTGATGAACTGGCAGGGGAGGA
GGAGGAGAAAGAAGAGAACGATGAAGCAGAGTTGTGTGCTCACTTGGGCG
AGGGTGCATCTTTGACAGGTTCTGACGAGAGGGAGGCAAGGGGGGAGGAA
GACGATCTCGAATCTGATTCGGAATCTTTGCTACTGGAATTGGTGGAGGC
TACTTCCACCCCAGCAATAAGTAGTGCGACGACAAGAGACGGAGCAGGAG
GAGGGGAAGACGGAGAGACTATTAGAAAGTGGCTCCGGCGACGGTACTGC
GCCTCATGCGGCGTACAGCGCATGCCATTGCGAACACATCACTGCAAAGA
GTGCAGAAGGTGTGTGTCTCGGCTGGATCACCATTCTTTGTTTGTGGGAA
ATTGTATCGGTAAGAAATGACGGGGAAATCGGAAGCAGAGGTGTGTGTAA
ATTGGCTGAATTTTATCAGAGAAGACACGTTTTTTCCCCTTCCTCCTCAC
ATGTATCAGCCAGGCCCGCGGACACTCATGCAACTCCTCCTTTCCTTATT
TACCTACTCTTTCCTCTCATCCTTCCCACGCAGGCGCGGGCAATCACCTC
TCATTCGTCCTTTTCCTCTTCTTCCAATCCCTTCACCTCTCCCTCGCCCT
CCTCCTCCTTTTCCTCTTGGACCTGCCCTCCCTCCTTTCCCACTACAACT
TCGACCGCGGACTCCTTGGTCTTCTGGGAGGTCTCAGTCAAAATCTGCTT
TTGGCCGGCCCACAAGCGCTTGTAGAAGAGCCCTTTTCCTCCTTTCTCTT
CCTCCTCGTTGCAATGTGGTGGTGCGTGAGTCACGCGGCGCTTTTCGCAC
AGCTGAAGGTGGTCTGTCTCAACCTGCTGACGGTGGAGGCACAAGAGGGG
GGAGAAAGACTACCCTACCTTGCTGGAGGCCATAATCCCTTTGATAAAGG
TTACTTCGGAAATGCCATCTCATTCTTGAGCCTCTTCTACCAGTACCACC
AAGAGAGACGGACGAAGGAAAGGCGGACAATGCAAGGGAGGGCAGGGAGA
GGTGGTCTGTCTTCATCCTTCTCCTCGTCTTCCTGGCCGTCTACTGCTGC
ATTTGCCTTCTCTTCCTCCTTCTCTTCCTCCTTCTCTTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTACCCTTCCGCCACATTTGC
CTCACCGCCAGGCTCAGTCTCCGCCTTCTCCTCTATCGGCTCCTCCTCCT
CTTCACCACACAGCAGCCCTTCCTCCTCCCCTTGCGACTCTCCCACCGCT
GCCCTCCTCTCTTCGTCCTCCATCAACTCCTTCTCCTTCCGCAGCCTCTC
CTCTTCCGCGCTTGGTGCTGCTTCCTCCGTCCCATCCACTACGCCCTCTT
CGTTTTTTACCTACATTCGACATAAATTCACCCCTTCCTCGGCTGGGATC
CGGCAGCAGCAGCGGCATTTGCACCCTCCTTCCTTCCCGCTTTTCCCAAC
TTTTGGGCTTAAGAAGAGTCGACCTCTTCCCCTTCCTTTGAAGGTTGCCC
CTTGAGCAGGTCGACGCGTAGATTAGATGTGATTCTCGATGGAGTGGTTG
ATCCACTTTTTTGCTCAAGTCAACTTTTAAATTTGATAAGCGCCAGAGCA
ACGAGACTATGAGGCAGTAAGAGATAGGAAATTTGAGTGAAATCGAAGAA
GGGAAAATGAGAGAGGACAGAAGTGAGGTCTAGATAGATGAATACTAAGG
GAGAGCAATGTACATTGAGAGAGAGTGAGAGGCCCAGTTTAGAAAATGCC
ACCTCCCCTATCCCCCCATCCCCTCTCTAAATCCCCCCTTACAATCTTCA
CTCCTCTTTTCATCTATGATAAGAGGAATTACAAATGTTACAAAAAATGG
ACGCAACTTTATTTATCAATTCAGTATTTAATTTACGTGTATTATTCATG
AAATACGTTTTTTAAATAATTTACCTGGAAAGACTCATGGACACAGACAG
CTAACAAAGTGAACTGGAAAGGAATCATCACAGACGATTGACGACATTTT
GCAACTTGAAAATCACCATGGTCTGATTTGAGCTCCAACTTTTTGATTAT
TGAGAGCCACGGATACCCACACAGAGTCAGAGACAGAGACAGAGACAGAA
AGAGTATAGTAGCACTCAAATTCACAGCAGCCCAAAACTAGAAGAACTCG
ACAAGCCCATGCTGTGACATTTTGGCCCTAAATCAACAACAAAGACAATG
AGAAGAAGGAAAACAACAACACGAGCAGCAGCTGCAGCAACATCAATAGC
GACAACTGCAAAAGGTAGAGAAGAAAAAGGAGGAAGAATTATAAAACGAA
AAAAACAAAAACATAAAACAAATGT back to topCoding sequence (CDS) from alignment at chr6:774424..777798- >NO06G02750.1 ID=NO06G02750.1|Name=NO06G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at chr6:774424..777798- (Nannochloropsis oceanica)
ATGACATACTTTGCGTCCATATCTCGCTTCGTCCCGGTGCCCTCATCCAG
CCGGCGGCGGCGGCCACGTCCACCAAATAGCAGTAGCAGCAGCACCCGCT
CCTGTTGGCGCTGGTGCCCATCTCCCTCACAATTTGGTTTAGCCTGCAGC
TTCTTAGGCCGCGTGATAGCTCATCCTTGCCTTATTACAAGTGCGTTATT
ACCGACAAGCAGCAGCAGCAGTAATTTAAGCCCCGGCTGTAGGCTCAGCC
AGTACTTGACCATAAGCGGGGCCTACCTTAAGTATCTCTGCAGAGCCCTG
GGACCAGACCCGGACGTGGCACTGCCAGCACCGCCGAGCAACAACAGCCA
GCCATCTCTCTCCTCATCGTCATTATGCCACTGCTCCTCTGTCTCGACAA
TCGCACCTCTACGCACTGAAGCCCAATTGTACGCCTGGGAGCAGCAACGT
CGTTGGCGCGCTTGGATGCTGATTGCCCGGCATTGGGGTGGAACGATAGT
GTTGAACCTGATGTTACTCCGCGATTCACGGTTTTGGACGCTTGTAGAGG
GGATGTTGGATCTTTTTTATACGTCCATGGTGATGTCGATGGTATTTTAT
GGGGTTGTTGCCTTATCCAACCCCGGATATCTCCCTCTTCATTTTCCGGT
TCAAGAAGAGGAGAAGGCAGCGAATGAGGACAAGCAGCACCGCAATGGAC
GAGAAGGAGCAGAGGAAAGGGAGAAAAAGGAGGAAGAGCAGGATGATGAT
GATGATGATGATAATCATAATGCAAATGAGGAGGAGAAGCAAAAACAGCT
GCAGCAAGAGGTGCTGTTGCGGGAGGAGGGCCGTGATGCTGTTTGTCAGA
CGGAGGAGAAAGAAAGAAAGCCTCGCCCGCGCATGGCTTCTGGAGCAGGT
GATTTGGACATAATTGAAGAGAAAGATGGGCATGAGGAGGCAACTGATGA
ACTGGCAGGGGAGGAGGAGGAGAAAGAAGAGAACGATGAAGCAGAGTTGT
GTGCTCACTTGGGCGAGGGTGCATCTTTGACAGGTTCTGACGAGAGGGAG
GCAAGGGGGGAGGAAGACGATCTCGAATCTGATTCGGAATCTTTGCTACT
GGAATTGGTGGAGGCTACTTCCACCCCAGCAATAAGTAGTGCGACGACAA
GAGACGGAGCAGGAGGAGGGGAAGACGGAGAGACTATTAGAAAGTGGCTC
CGGCGACGGTACTGCGCCTCATGCGGCGTACAGCGCATGCCATTGCGAAC
ACATCACTGCAAAGAGTGCAGAAGGTGTGTGTCTCGGCTGGATCACCATT
CTTTGTTTGTGGGAAATTGTATCGGCGCGGGCAATCACCTCTCATTCGTC
CTTTTCCTCTTCTTCCAATCCCTTCACCTCTCCCTCGCCCTCCTCCTCCT
TTTCCTCTTGGACCTGCCCTCCCTCCTTTCCCACTACAACTTCGACCGCG
GACTCCTTGGTCTTCTGGGAGGTCTCAGTCAAAATCTGCTTTTGGCCGGC
CCACAAGCGCTTGTAGAAGAGCCCTTTTCCTCCTTTCTCTTCCTCCTCGT
TGCAATGTGGTGGTGCGTGAGTCACGCGGCGCTTTTCGCACAGCTGAAGG
TGGTCTGTCTCAACCTGCTGACGGTGGAGGCACAAGAGGGGGGAGAAAGA
CTACCCTACCTTGCTGGAGGCCATAATCCCTTTGATAAAGGTTACTTCGG
AAATGCCATCTCATTCTTGAGCCTCTTCTACCAGTACCACCAAGAGAGAC
GGACGAAGGAAAGGCGGACAATGCAAGGGAGGGCAGGGAGAGGTGGTCTG
TCTTCATCCTTCTCCTCGTCTTCCTGGCCGTCTACTGCTGCATTTGCCTT
CTCTTCCTCCTTCTCTTCCTCCTTCTCTTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTACCCTTCCGCCACATTTGCCTCACCGCC
AGGCTCAGTCTCCGCCTTCTCCTCTATCGGCTCCTCCTCCTCTTCACCAC
ACAGCAGCCCTTCCTCCTCCCCTTGCGACTCTCCCACCGCTGCCCTCCTC
TCTTCGTCCTCCATCAACTCCTTCTCCTTCCGCAGCCTCTCCTCTTCCGC
GCTTGGTGCTGCTTCCTCCGTCCCATCCACTACGCCCTCTTCGTTTTTTA
CCTACATTCGACATAAATTCACCCCTTCCTCGGCTGGGATCCGGCAGCAG
CAGCGGCATTTGCACCCTCCTTCCTTCCCGCTTTTCCCAACTTTTGGGCT
TAAGAAGAGTCGACCTCTTCCCCTTCCTTTGAAGGTTGCCCCTTGA back to top
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