NO06G02740.1, NO06G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02740.1
Unique NameNO06G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length933
Alignment locationchr6:770498..771430 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:770498..771430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02740.1 vs.
Match: EWM26288.1 (c-1-tetrahydrofolate cytoplasmic [Nannochloropsis gaditana])

HSP 1 Score: 538.5 bits (1386), Expect = 1.400e-149
Identity = 274/312 (87.82%), Postives = 288/312 (92.31%), Query Frame = 0 
Query:    1 MATPSS---DNIIDGKAIAEVIRGEIKDECTALLASSDVKPGLAVVLVGNRTDSATYVRMKIKACEEVGINSFKFEFPEDVTEADLIAKVEELNADPAVHGILVQLPIPPHIHEQKVLDTILPDKDVDGLHPLNLAKLAHTNTHGSKGKFDLKALPFHAACTPQGCIELIERSGMVIEGKEAVVIGRSNIVGIPVSLLLMQKNATVTIVHSRTKDAAAVCKRADIIVAAVGRAEMVKADFVKPGAVVIDVGINSVDDPTSKRGYKLVGDVDFEGCKTVAGKITPVPGGVGPMTIAMLLRNTLQGAKRKAQEG 310
            MATPSS   DNIIDGK IAE IRGEIK+EC ALL SS V PGLAVVLVGNRTDSATYVRMKIKACEEVGI+SFKF+FP DVTEADLIAKV ELNADPAVHGILVQLP+P HIHEQKVLDTILPDKDVDGLHPLNLA+LAHTNTHGS  KFDLK LP+HAACTPQGCIELIERSG VIEGKEAVVIGRSNIVGIPV LLLMQKNATVT++HSRTKDA+AVCKRADI+VAAVGRAEMVK D++KPGAVVIDVGINSVDDPTSK+GY+LVGDVDF GCK VAGKITPVPGGVGPMTIAMLLRNTLQGAKR    G
Sbjct:    1 MATPSSSSADNIIDGKVIAETIRGEIKEECAALLQSSGVTPGLAVVLVGNRTDSATYVRMKIKACEEVGIHSFKFDFPSDVTEADLIAKVAELNADPAVHGILVQLPLPGHIHEQKVLDTILPDKDVDGLHPLNLAQLAHTNTHGSSRKFDLKTLPYHAACTPQGCIELIERSGTVIEGKEAVVIGRSNIVGIPVFLLLMQKNATVTVIHSRTKDASAVCKRADIVVAAVGRAEMVKPDWIKPGAVVIDVGINSVDDPTSKKGYRLVGDVDFAGCKAVAGKITPVPGGVGPMTIAMLLRNTLQGAKRGLSGG 312
The following BLAST results are available for this feature:
BLAST of NO06G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26288.11.400e-14987.82c-1-tetrahydrofolate cytoplasmic [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02740NO06G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02740.1NO06G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02740.1.cds1NO06G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02740.1 ID=NO06G02740.1|Name=NO06G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGCTACCCCTTCTTCCGACAATATCATCGACGGCAAGGCAATCGCAGA
GGTGATCCGAGGAGAGATTAAGGACGAGTGCACCGCCCTATTGGCATCTT
CGGACGTGAAGCCCGGCTTGGCTGTTGTGCTTGTGGGGAACCGTACGGAC
TCCGCGACCTACGTCCGAATGAAGATCAAGGCTTGTGAGGAGGTGGGGAT
CAATTCGTTCAAATTCGAGTTCCCCGAAGATGTGACCGAGGCAGATTTGA
TCGCCAAAGTTGAAGAATTGAATGCTGACCCAGCCGTGCATGGTATTTTG
GTACAGCTGCCCATTCCTCCTCACATTCATGAGCAGAAGGTCTTGGACAC
AATCCTGCCTGACAAGGACGTCGATGGTCTCCACCCTTTGAATCTGGCCA
AGCTGGCGCATACCAATACGCATGGATCCAAGGGGAAATTTGACTTAAAG
GCGTTGCCTTTCCACGCGGCCTGCACGCCCCAAGGGTGTATTGAGCTGAT
CGAGAGGTCCGGGATGGTGATTGAAGGCAAAGAAGCCGTAGTCATTGGGA
GGAGTAACATTGTTGGGATCCCCGTCTCTCTCCTTCTGATGCAAAAGAAT
GCAACCGTGACGATCGTGCACTCGCGAACAAAGGACGCGGCGGCGGTTTG
CAAACGCGCGGATATCATCGTGGCAGCCGTTGGGCGGGCGGAGATGGTCA
AGGCCGACTTTGTGAAGCCGGGGGCGGTGGTGATTGATGTGGGAATCAAC
AGTGTTGATGATCCGACGAGCAAGAGGGGGTATAAATTGGTGGGGGACGT
TGATTTTGAAGGCTGTAAGACGGTGGCGGGAAAGATAACCCCGGTGCCCG
GGGGTGTTGGCCCGATGACGATTGCGATGCTATTGAGGAATACGCTGCAG
GGGGCGAAGAGGAAGGCGCAAGAGGGGAAGTAG
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protein sequence of NO06G02740.1

>NO06G02740.1-protein ID=NO06G02740.1-protein|Name=NO06G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MATPSSDNIIDGKAIAEVIRGEIKDECTALLASSDVKPGLAVVLVGNRTD
SATYVRMKIKACEEVGINSFKFEFPEDVTEADLIAKVEELNADPAVHGIL
VQLPIPPHIHEQKVLDTILPDKDVDGLHPLNLAKLAHTNTHGSKGKFDLK
ALPFHAACTPQGCIELIERSGMVIEGKEAVVIGRSNIVGIPVSLLLMQKN
ATVTIVHSRTKDAAAVCKRADIIVAAVGRAEMVKADFVKPGAVVIDVGIN
SVDDPTSKRGYKLVGDVDFEGCKTVAGKITPVPGGVGPMTIAMLLRNTLQ
GAKRKAQEGK*
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mRNA from alignment at chr6:770498..771430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02740.1 ID=NO06G02740.1|Name=NO06G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp|location=Sequence derived from alignment at chr6:770498..771430- (Nannochloropsis oceanica)
ATGGCTACCCCTTCTTCCGACAATATCATCGACGGCAAGGCAATCGCAGA
GGTGATCCGAGGAGAGATTAAGGACGAGTGCACCGCCCTATTGGCATCTT
CGGACGTGAAGCCCGGCTTGGCTGTTGTGCTTGTGGGGAACCGTACGGAC
TCCGCGACCTACGTCCGAATGAAGATCAAGGCTTGTGAGGAGGTGGGGAT
CAATTCGTTCAAATTCGAGTTCCCCGAAGATGTGACCGAGGCAGATTTGA
TCGCCAAAGTTGAAGAATTGAATGCTGACCCAGCCGTGCATGGTATTTTG
GTACAGCTGCCCATTCCTCCTCACATTCATGAGCAGAAGGTCTTGGACAC
AATCCTGCCTGACAAGGACGTCGATGGTCTCCACCCTTTGAATCTGGCCA
AGCTGGCGCATACCAATACGCATGGATCCAAGGGGAAATTTGACTTAAAG
GCGTTGCCTTTCCACGCGGCCTGCACGCCCCAAGGGTGTATTGAGCTGAT
CGAGAGGTCCGGGATGGTGATTGAAGGCAAAGAAGCCGTAGTCATTGGGA
GGAGTAACATTGTTGGGATCCCCGTCTCTCTCCTTCTGATGCAAAAGAAT
GCAACCGTGACGATCGTGCACTCGCGAACAAAGGACGCGGCGGCGGTTTG
CAAACGCGCGGATATCATCGTGGCAGCCGTTGGGCGGGCGGAGATGGTCA
AGGCCGACTTTGTGAAGCCGGGGGCGGTGGTGATTGATGTGGGAATCAAC
AGTGTTGATGATCCGACGAGCAAGAGGGGGTATAAATTGGTGGGGGACGT
TGATTTTGAAGGCTGTAAGACGGTGGCGGGAAAGATAACCCCGGTGCCCG
GGGGTGTTGGCCCGATGACGATTGCGATGCTATTGAGGAATACGCTGCAG
GGGGCGAAGAGGAAGGCGCAAGAGGGGAAGTAG
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Coding sequence (CDS) from alignment at chr6:770498..771430-

>NO06G02740.1 ID=NO06G02740.1|Name=NO06G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr6:770498..771430- (Nannochloropsis oceanica)
ATGGCTACCCCTTCTTCCGACAATATCATCGACGGCAAGGCAATCGCAGA
GGTGATCCGAGGAGAGATTAAGGACGAGTGCACCGCCCTATTGGCATCTT
CGGACGTGAAGCCCGGCTTGGCTGTTGTGCTTGTGGGGAACCGTACGGAC
TCCGCGACCTACGTCCGAATGAAGATCAAGGCTTGTGAGGAGGTGGGGAT
CAATTCGTTCAAATTCGAGTTCCCCGAAGATGTGACCGAGGCAGATTTGA
TCGCCAAAGTTGAAGAATTGAATGCTGACCCAGCCGTGCATGGTATTTTG
GTACAGCTGCCCATTCCTCCTCACATTCATGAGCAGAAGGTCTTGGACAC
AATCCTGCCTGACAAGGACGTCGATGGTCTCCACCCTTTGAATCTGGCCA
AGCTGGCGCATACCAATACGCATGGATCCAAGGGGAAATTTGACTTAAAG
GCGTTGCCTTTCCACGCGGCCTGCACGCCCCAAGGGTGTATTGAGCTGAT
CGAGAGGTCCGGGATGGTGATTGAAGGCAAAGAAGCCGTAGTCATTGGGA
GGAGTAACATTGTTGGGATCCCCGTCTCTCTCCTTCTGATGCAAAAGAAT
GCAACCGTGACGATCGTGCACTCGCGAACAAAGGACGCGGCGGCGGTTTG
CAAACGCGCGGATATCATCGTGGCAGCCGTTGGGCGGGCGGAGATGGTCA
AGGCCGACTTTGTGAAGCCGGGGGCGGTGGTGATTGATGTGGGAATCAAC
AGTGTTGATGATCCGACGAGCAAGAGGGGGTATAAATTGGTGGGGGACGT
TGATTTTGAAGGCTGTAAGACGGTGGCGGGAAAGATAACCCCGGTGCCCG
GGGGTGTTGGCCCGATGACGATTGCGATGCTATTGAGGAATACGCTGCAG
GGGGCGAAGAGGAAGGCGCAAGAGGGGAAGTAG
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Synonyms
Publications