NO06G02690.1, NO06G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02690.1
Unique NameNO06G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr6:760505..761845 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:760505..761845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02690.1 vs.
Match: XP_005855154.1 (3-oxoacyl-ACP reductase, partial [Nannochloropsis gaditana CCMP526]; EKU21204.1 3-oxoacyl-ACP reductase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 447.6 bits (1150), Expect = 3.100e-122
Identity = 222/263 (84.41%), Postives = 250/263 (95.06%), Query Frame = 0
Query:   37 MALSMKGSRRALITGAGSGIGEGIAISLAIEHGWEIIATDLNFEAAQGTAAQIKARGGEAEAYALNVADNSQITALVEELKAGRKRIDVLVNNAGLQHVARLEDFPSEKWGFMIQVMLTGVADLTRSILPIMRKQGFGRIVNIGSIHSVIASPYKSAYVAAKHGLIGFSKVMALETSDVDVTINTICPSYVKTPLVDSQIANQAKTHGISEEDVINKIMLEPMPKKAFISMEELVGTTVFLSSNAARNMTGQALVLDGGWTVR 300
            M LS++GSRRA ITGAGSGIG GIA SLA+EHGWE+IATD+N EAAQGTAAQIKA+ G+AEAYALNVADN+QI +L+E+LK   K +DVL+NNAGLQHVARLEDFP+EKWGFMIQVMLTGVADLTR+ILP+M +QGFGRIVNIGSIHSVIASP+KSAYVAAKHGLIGFSKV+ALETSDVD+TINTICPSYVKTPLVD+QIANQAKTHGISE++VINKIMLEPMPKKAFIS++ELVGTT+FL+S+AARNMTGQ LVLDGGWTVR
Sbjct:   14 MELSLQGSRRAFITGAGSGIGAGIASSLALEHGWEVIATDVNLEAAQGTAAQIKAKDGKAEAYALNVADNTQIVSLIEQLKREGKNVDVLINNAGLQHVARLEDFPAEKWGFMIQVMLTGVADLTRAILPMMHEQGFGRIVNIGSIHSVIASPFKSAYVAAKHGLIGFSKVIALETSDVDITINTICPSYVKTPLVDAQIANQAKTHGISEDEVINKIMLEPMPKKAFISIQELVGTTLFLTSDAARNMTGQTLVLDGGWTVR 276          
The following BLAST results are available for this feature:
BLAST of NO06G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855154.13.100e-12284.413-oxoacyl-ACP reductase, partial [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02690NO06G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02690.1NO06G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02690.1.cds1NO06G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02690.1 ID=NO06G02690.1|Name=NO06G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
GTTGAATTTTCCATTCGCTATTAGTTGCATAGTATTAGTTCAAATCAACG
CGTGATTCCTATATATCATGAAACAAACTATTTATGGTCATAATATGCAC
CGACACCCGGTCTAATTTTTCGTATTCAAAGGGAACGGCAAATCTACGTC
ACAGCCGCTCATCTAAAATTCCAACGGACGACGACACCGACGAATCAGCC
GTTGGCAAGCAACCTGTTTTGTCCCCTCCACACGCCTGGTTCTCAAGCGT
TGCGTGCCGTATAATTACGTCTTTTTAAGTCCCATCATGTACCAGGCAAT
GTTTTGGTCTTATATGGCATGGAAACCATGCCCTTTTCCCAAACACAAAC
AGACAGGTGCCACACCACACTTCGCTCTTGGCGCAAACCACACCATGGCG
CTATCAATGAAGGGGTCGCGCCGCGCCTTGATCACGGGCGCGGGTAGTGG
TATCGGGGAGGGTATTGCTATCTCCTTGGCCATTGAGCATGGGTGGGAGA
TCATCGCTACGGATTTGAATTTCGAGGCGGCACAAGGAACGGCTGCGCAG
ATAAAGGCCCGGGGCGGCGAGGCCGAGGCATATGCGCTCAATGTAGCCGA
CAACTCTCAGATAACGGCACTCGTTGAGGAGCTCAAGGCGGGACGAAAAC
GAATTGATGTGTTGGTCAACAACGCAGGATTGCAGCACGTAGCGCGCTTG
GAAGATTTCCCGTCGGAGAAGTGGGGGTTTATGATCCAAGTCATGCTCAC
GGGGGTGGCCGACTTGACCCGGTCCATCTTGCCTATCATGCGTAAGCAAG
GCTTCGGCCGCATTGTGAACATTGGTTCTATCCACAGTGTGATTGCGTCT
CCATACAAGTCTGCATACGTGGCGGCGAAACACGGTTTGATTGGCTTTTC
TAAGGTCATGGCTTTGGAGACCAGTGACGTCGACGTCACAATCAATACTA
TCTGTCCTTCATATGTCAAAACACCCTTGGTGGATTCTCAAATTGCTAAC
CAGGCCAAGACTCATGGGATTAGTGAGGAGGATGTGATCAATAAAATTAT
GCTTGAACCCATGCCGAAAAAAGCGTTTATCTCGATGGAGGAGCTGGTGG
GGACAACGGTATTTTTGTCGTCCAACGCTGCGAGGAATATGACGGGGCAG
GCGTTGGTATTGGATGGGGGTTGGACAGTACGTTAATATATATCATTTAA
AGAAAGGAAGTACGTGGTGTGCACGTAAGAATTATGACTCGGTAGGCGAG
AGGATATACGCGAAGGGAAAGGTTGGTTTGCTTATGGGAGAGCGCGCCTT
TAAACAAAAATGAACAGGCGAACAACAAACGTTGCAGTGGA
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protein sequence of NO06G02690.1

>NO06G02690.1-protein ID=NO06G02690.1-protein|Name=NO06G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MYQAMFWSYMAWKPCPFPKHKQTGATPHFALGANHTMALSMKGSRRALIT
GAGSGIGEGIAISLAIEHGWEIIATDLNFEAAQGTAAQIKARGGEAEAYA
LNVADNSQITALVEELKAGRKRIDVLVNNAGLQHVARLEDFPSEKWGFMI
QVMLTGVADLTRSILPIMRKQGFGRIVNIGSIHSVIASPYKSAYVAAKHG
LIGFSKVMALETSDVDVTINTICPSYVKTPLVDSQIANQAKTHGISEEDV
INKIMLEPMPKKAFISMEELVGTTVFLSSNAARNMTGQALVLDGGWTVR*
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mRNA from alignment at chr6:760505..761845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02690.1 ID=NO06G02690.1|Name=NO06G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr6:760505..761845+ (Nannochloropsis oceanica)
GTTGAATTTTCCATTCGCTATTAGTTGCATAGTATTAGTTCAAATCAACG CGTGATTCCTATATATCATGAAACAAACTATTTATGGTCATAATATGCAC CGACACCCGGTCTAATTTTTCGTATTCAAAGGGAACGGCAAATCTACGTC ACAGCCGCTCATCTAAAATTCCAACGGACGACGACACCGACGAATCAGCC GTTGGCAAGCAACCTGTTTTGTCCCCTCCACACGCCTGGTTCTCAAGCGT TGCGTGCCGTATAATTACGTCTTTTTAAGTCCCATCATGTACCAGGCAAT GTTTTGGTCTTATATGGCATGGAAACCATGCCCTTTTCCCAAACACAAAC AGACAGGTGCCACACCACACTTCGCTCTTGGCGCAAACCACACCATGGCG CTATCAATGAAGGGGTCGCGCCGCGCCTTGATCACGGGCGCGGGTAGTGG TATCGGGGAGGGTATTGCTATCTCCTTGGCCATTGAGCATGGGTGGGAGA TCATCGCTACGGATTTGAATTTCGAGGCGGCACAAGGAACGGCTGCGCAG ATAAAGGCCCGGGGCGGCGAGGCCGAGGCATATGCGCTCAATGTAGCCGA CAACTCTCAGATAACGGCACTCGTTGAGGAGCTCAAGGCGGGACGAAAAC GAATTGATGTGTTGGTCAACAACGCAGGATTGCAGCACGTAGCGCGCTTG GAAGATTTCCCGTCGGAGAAGTGGGGGTTTATGATCCAAGTCATGCTCAC GGGGGTGGCCGACTTGACCCGGTCCATCTTGCCTATCATGCGTAAGCAAG GCTTCGGCCGCATTGTGAACATTGGTTCTATCCACAGTGTGATTGCGTCT CCATACAAGTCTGCATACGTGGCGGCGAAACACGGTTTGATTGGCTTTTC TAAGGTCATGGCTTTGGAGACCAGTGACGTCGACGTCACAATCAATACTA TCTGTCCTTCATATGTCAAAACACCCTTGGTGGATTCTCAAATTGCTAAC CAGGCCAAGACTCATGGGATTAGTGAGGAGGATGTGATCAATAAAATTAT GCTTGAACCCATGCCGAAAAAAGCGTTTATCTCGATGGAGGAGCTGGTGG GGACAACGGTATTTTTGTCGTCCAACGCTGCGAGGAATATGACGGGGCAG GCGTTGGTATTGGATGGGGGTTGGACAGTACGTTAATATATATCATTTAA AGAAAGGAAGTACGTGGTGTGCACGTAAGAATTATGACTCGGTAGGCGAG AGGATATACGCGAAGGGAAAGGTTGGTTTGCTTATGGGAGAGCGCGCCTT TAAACAAAAATGAACAGGCGAACAACAAACGTTGCAGTGGA
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Coding sequence (CDS) from alignment at chr6:760505..761845+

>NO06G02690.1 ID=NO06G02690.1|Name=NO06G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr6:760505..761845+ (Nannochloropsis oceanica)
ATGTACCAGGCAATGTTTTGGTCTTATATGGCATGGAAACCATGCCCTTT
TCCCAAACACAAACAGACAGGTGCCACACCACACTTCGCTCTTGGCGCAA
ACCACACCATGGCGCTATCAATGAAGGGGTCGCGCCGCGCCTTGATCACG
GGCGCGGGTAGTGGTATCGGGGAGGGTATTGCTATCTCCTTGGCCATTGA
GCATGGGTGGGAGATCATCGCTACGGATTTGAATTTCGAGGCGGCACAAG
GAACGGCTGCGCAGATAAAGGCCCGGGGCGGCGAGGCCGAGGCATATGCG
CTCAATGTAGCCGACAACTCTCAGATAACGGCACTCGTTGAGGAGCTCAA
GGCGGGACGAAAACGAATTGATGTGTTGGTCAACAACGCAGGATTGCAGC
ACGTAGCGCGCTTGGAAGATTTCCCGTCGGAGAAGTGGGGGTTTATGATC
CAAGTCATGCTCACGGGGGTGGCCGACTTGACCCGGTCCATCTTGCCTAT
CATGCGTAAGCAAGGCTTCGGCCGCATTGTGAACATTGGTTCTATCCACA
GTGTGATTGCGTCTCCATACAAGTCTGCATACGTGGCGGCGAAACACGGT
TTGATTGGCTTTTCTAAGGTCATGGCTTTGGAGACCAGTGACGTCGACGT
CACAATCAATACTATCTGTCCTTCATATGTCAAAACACCCTTGGTGGATT
CTCAAATTGCTAACCAGGCCAAGACTCATGGGATTAGTGAGGAGGATGTG
ATCAATAAAATTATGCTTGAACCCATGCCGAAAAAAGCGTTTATCTCGAT
GGAGGAGCTGGTGGGGACAACGGTATTTTTGTCGTCCAACGCTGCGAGGA
ATATGACGGGGCAGGCGTTGGTATTGGATGGGGGTTGGACAGTACGTTAA
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Synonyms
Publications