NO06G02660.1, NO06G02660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02660.1
Unique NameNO06G02660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1003
Alignment locationchr6:755886..756989 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:755886..756989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02660.1 vs.
Match: EWM26281.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 223.8 bits (569), Expect = 6.300e-55
Identity = 153/270 (56.67%), Postives = 180/270 (66.67%), Query Frame = 0 
Query:    1 MTTIRFVATSVMSSDDGLSYKTEQLEDEEAHKKRLDKEKAAHGRTLWEQLEEQKDKKKAEYDAVTKQIFAPPKALDEAEASYLQGILEQEKMRDRRRAEEEERELAAFSLARANRDLGSNGEEMVAGGGKVSPREGAGARGGAATREETGGSTGGG---GNSSNGNKSFPDVKISAKIKRKEKSSK--EGGKEG-----KEDKDSSSHHKRHKKEDKTNKKASTATSAVASAAPSAPAAPAAPAKPEVPATAAANSLAMLAAYDSDEEED 261
            M  IRFVATSV+SSDDG+SYKTEQLEDEEAHKKRL+KEKAAH RTLWEQLEEQK+KKKAEYDAVTKQIFAPPKALDE EASYL GILEQEK R+RRRAEEEERELAAFSLARANRDL     + +    +    EG G       R ++G S   G     + NG ++FP+VKI+ KIKRK KS K  EGG +G       D D  S HK+ K++++  K+ + +T                           ANSL+MLAAY SDE+E+
Sbjct:    1 MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLARANRDLNHTQHDTLVEDAR-GVAEGTGGAETQGKRLDSGRSGSSGATVAGNGNGKRAFPEVKINVKIKRKGKSGKTSEGGSKGSLSSSNIDDDKDSGHKKQKRDEEERKEKAPST---------------------------ANSLSMLAAYASDEDEE 242
The following BLAST results are available for this feature:
BLAST of NO06G02660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26281.16.300e-5556.67conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02660NO06G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02660.1NO06G02660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02660.1.cds1NO06G02660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02660.1.cds2NO06G02660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02660.1 ID=NO06G02660.1|Name=NO06G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp
ACAGCAAATACAGCCAGCACGCCCCTCCGCCAGACCACACTACAACTAGC
CAAACCATCACCATGACAACAATTCGCTTCGTGGCCACGTCGGTAATGTC
GTCCGACGACGGGCTCTCCTACAAAACCGAGCAGCTCGAGGACGAGGAGG
CGCACAAAAAGCGCCTGGATAAGGAAAAGGCTGCGCATGGGCGCACGTTA
TGGGAGCAGTTGGAAGAGCAAAAGGACAAGAAAAAAGCTGAATACGACGC
GGTGACCAAACAGATCTTTGCTCCCCCCAAAGCCCTCGACGAAGCAGAAG
CCTCATACCTGCAAGGAATTTTAGAGCAAGAAAAGATGCGAGATCGCCGT
CGGGCCGAGGAGGAAGAGAGGGAGTTGGCGGCGTTTTCGTTGGCAAGGGC
GAATCGGGACTTGGGCTCGAATGGGGAGGAAATGGTGGCGGGGGGTGGGA
AGGTGTCACCAAGAGAAGGAGCAGGAGCAAGAGGAGGAGCGGCAACAAGA
GAGGAGACAGGTGGTAGTACGGGTGGAGGTGGAAACAGCAGCAACGGAAA
CAAGAGCTTTCCGGATGTGAAAATCAGTGCGAAGATTAAGCGGAAGGAGA
AGAGCAGTAAGGAGGGGGGCAAAGAAGGGAAGGAGGACAAGGATAGCAGC
AGCCACCACAAGAGGCATAAGAAGGAAGACAAGACCAATAAGAAGGCATC
TACGGCGACCTCAGCAGTAGCATCAGCAGCACCATCAGCACCAGCAGCAC
CAGCAGCACCAGCAAAGCCAGAAGTACCGGCAACAGCAGCAGCAAATTCA
CTGGCCATGTTGGCAGCCTATGACAGCGACGAAGAAGAGGATTAACAAAC
AAAAATGAAGCAAGGGGAAGAGTAGGGAAAAGAAGGTAGAAGAGAAAAGG
AGAGGCACACAGAGAAAAAGACGGGAACGGACTAATGACCTCCCAAAGGA
GGAGCAGATTGTACATAGCAAGTATAGAAAGGGAAGGAGCGAGCAAATGG
AAG
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protein sequence of NO06G02660.1

>NO06G02660.1-protein ID=NO06G02660.1-protein|Name=NO06G02660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MTTIRFVATSVMSSDDGLSYKTEQLEDEEAHKKRLDKEKAAHGRTLWEQL
EEQKDKKKAEYDAVTKQIFAPPKALDEAEASYLQGILEQEKMRDRRRAEE
EERELAAFSLARANRDLGSNGEEMVAGGGKVSPREGAGARGGAATREETG
GSTGGGGNSSNGNKSFPDVKISAKIKRKEKSSKEGGKEGKEDKDSSSHHK
RHKKEDKTNKKASTATSAVASAAPSAPAAPAAPAKPEVPATAAANSLAML
AAYDSDEEED*
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mRNA from alignment at chr6:755886..756989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02660.1 ID=NO06G02660.1|Name=NO06G02660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at chr6:755886..756989- (Nannochloropsis oceanica)
ACAGCAAATACAGCCAGCACGCCCCTCCGCCAGACCACACTACAACTAGC
CAAACCATCACCATGACAACAATTCGCTTCGTGGCCACGTCGGTAATGTC
GTCCGACGACGGGGTATGTAGCCCAAGCCTCCCTCCCTCCCCTCCCCCCT
CCTTCTCACCTTCCTCCTTCCTCACTCCTCACTTTTCATCTCCTCTCCAC
CACATTTTCCATAGCTCTCCTACAAAACCGAGCAGCTCGAGGACGAGGAG
GCGCACAAAAAGCGCCTGGATAAGGAAAAGGCTGCGCATGGGCGCACGTT
ATGGGAGCAGTTGGAAGAGCAAAAGGACAAGAAAAAAGCTGAATACGACG
CGGTGACCAAACAGATCTTTGCTCCCCCCAAAGCCCTCGACGAAGCAGAA
GCCTCATACCTGCAAGGAATTTTAGAGCAAGAAAAGATGCGAGATCGCCG
TCGGGCCGAGGAGGAAGAGAGGGAGTTGGCGGCGTTTTCGTTGGCAAGGG
CGAATCGGGACTTGGGCTCGAATGGGGAGGAAATGGTGGCGGGGGGTGGG
AAGGTGTCACCAAGAGAAGGAGCAGGAGCAAGAGGAGGAGCGGCAACAAG
AGAGGAGACAGGTGGTAGTACGGGTGGAGGTGGAAACAGCAGCAACGGAA
ACAAGAGCTTTCCGGATGTGAAAATCAGTGCGAAGATTAAGCGGAAGGAG
AAGAGCAGTAAGGAGGGGGGCAAAGAAGGGAAGGAGGACAAGGATAGCAG
CAGCCACCACAAGAGGCATAAGAAGGAAGACAAGACCAATAAGAAGGCAT
CTACGGCGACCTCAGCAGTAGCATCAGCAGCACCATCAGCACCAGCAGCA
CCAGCAGCACCAGCAAAGCCAGAAGTACCGGCAACAGCAGCAGCAAATTC
ACTGGCCATGTTGGCAGCCTATGACAGCGACGAAGAAGAGGATTAACAAA
CAAAAATGAAGCAAGGGGAAGAGTAGGGAAAAGAAGGTAGAAGAGAAAAG
GAGAGGCACACAGAGAAAAAGACGGGAACGGACTAATGACCTCCCAAAGG
AGGAGCAGATTGTACATAGCAAGTATAGAAAGGGAAGGAGCGAGCAAATG
GAAG
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Coding sequence (CDS) from alignment at chr6:755886..756989-

>NO06G02660.1 ID=NO06G02660.1|Name=NO06G02660.1|organism=Nannochloropsis oceanica|type=CDS|length=783bp|location=Sequence derived from alignment at chr6:755886..756989- (Nannochloropsis oceanica)
ATGACAACAATTCGCTTCGTGGCCACGTCGGTAATGTCGTCCGACGACGG
GCTCTCCTACAAAACCGAGCAGCTCGAGGACGAGGAGGCGCACAAAAAGC
GCCTGGATAAGGAAAAGGCTGCGCATGGGCGCACGTTATGGGAGCAGTTG
GAAGAGCAAAAGGACAAGAAAAAAGCTGAATACGACGCGGTGACCAAACA
GATCTTTGCTCCCCCCAAAGCCCTCGACGAAGCAGAAGCCTCATACCTGC
AAGGAATTTTAGAGCAAGAAAAGATGCGAGATCGCCGTCGGGCCGAGGAG
GAAGAGAGGGAGTTGGCGGCGTTTTCGTTGGCAAGGGCGAATCGGGACTT
GGGCTCGAATGGGGAGGAAATGGTGGCGGGGGGTGGGAAGGTGTCACCAA
GAGAAGGAGCAGGAGCAAGAGGAGGAGCGGCAACAAGAGAGGAGACAGGT
GGTAGTACGGGTGGAGGTGGAAACAGCAGCAACGGAAACAAGAGCTTTCC
GGATGTGAAAATCAGTGCGAAGATTAAGCGGAAGGAGAAGAGCAGTAAGG
AGGGGGGCAAAGAAGGGAAGGAGGACAAGGATAGCAGCAGCCACCACAAG
AGGCATAAGAAGGAAGACAAGACCAATAAGAAGGCATCTACGGCGACCTC
AGCAGTAGCATCAGCAGCACCATCAGCACCAGCAGCACCAGCAGCACCAG
CAAAGCCAGAAGTACCGGCAACAGCAGCAGCAAATTCACTGGCCATGTTG
GCAGCCTATGACAGCGACGAAGAAGAGGATTAA
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Synonyms
Publications