NO06G02630.1, NO06G02630.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G02630.1
Unique Name	NO06G02630.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1515
Alignment location	chr6:740594..743365 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:740594..743365 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO06G02630.1 vs.
Match: EWM26289.1 (protein phosphatase pp2a regulatory subunit b [Nannochloropsis gaditana])

HSP 1 Score: 609.8 bits (1571), Expect = 7.900e-171
Identity = 330/502 (65.74%), Postives = 374/502 (74.50%), Query Frame = 0

Query:   10 SSVVRTPEFSQCFGDKAALEELTDADLLTALEFDLTGDYLATGDRGGRVVLFEKGDDIKQVTANGRRKWACKYRFYSEFQSHEPEFDYLKSLEIEEKINQIKWCPTTNNSHFLLSTNDKTIKLWRIRDRQIKEALQRHETPPRPGSLRSSSPARSSPFRGAVGGGGVRGGGVRGGGEGGGGAVAEEVLQFP--RLYTKGSMVTATNKRCFSNAHAYHINSLSVNVDGQTFLSADDLRINLWSLENHQQAYNIVDLKPANMDDLNEVITSASFHPSASNLVMFSSSKGAVRVADLRTSALCTQPSLVLENHIEDPIDRSFFSEIISSVADARYCRGDGRFLFTRDYLTVKVWDMHMPSAPVSIMTVNPSLRPLLADLYETDAMFDKFECAVSGNGQYFATGTYNNTFQVRDREGRAEASHAEVSRTVGRKQRVG---GGGGRGGMMR-MEAGKRGGRGGRGG-GVDGGGDVMAFDKKVMHLAWHPERDVLAVAGLNRLYFYTV 505
            +S+VRTPEFSQCFGDKAALEELTDADLLTA+EFD TGDYLATGDRGGRVVLFE+GDDIK V  +GR KWACKYRFYSEFQSHEPEFDYLKSLEIEEKINQIKWC   N S FLLSTNDKTIK+WRIR+R++KEAL  H    RP S              AV  G ++   +      G    A     +P    Y   S+    +   F +A    IN                    LW+L+N  QAYNIVDLKPANMDDLNEVITSASFHPS++NL+M+SSS+G VR+ DLR SAL TQP+++ +NHIEDP +RSFFSEIISS+ADARYCRGDGRFLFTRDYLTVKVWD HMPSAP+SIM +N SLRP LADLYETDA+FDKFECAVSG+GQ+ ATGTYNN FQV DREGR E S  EVSRT+ +KQRVG    GG +GGM+     GK GG  G GG G DGGG+ +AFDKK+MHLAWHPERDV+A+AGLNRLYFYTV
Sbjct:    2 ASIVRTPEFSQCFGDKAALEELTDADLLTAVEFDDTGDYLATGDRGGRVVLFERGDDIKSVMPDGRHKWACKYRFYSEFQSHEPEFDYLKSLEIEEKINQIKWCRPINGSRFLLSTNDKTIKMWRIREREVKEALNPHNIFARPES--------------AVAEGILQFPKLY---SKGSQVTAANKRSYPNAHAYHINSLSVNVDGETFISADDLRIN--------------------LWNLDNEHQAYNIVDLKPANMDDLNEVITSASFHPSSANLLMYSSSRGVVRIGDLRASALFTQPAMMFDNHIEDPCERSFFSEIISSIADARYCRGDGRFLFTRDYLTVKVWDTHMPSAPISIMEINASLRPHLADLYETDAIFDKFECAVSGDGQHVATGTYNNAFQVHDREGRMEGSQTEVSRTMAKKQRVGMGPVGGVKGGMLNGGGVGKSGGGRGAGGMGADGGGETLAFDKKIMHLAWHPERDVVAIAGLNRLYFYTV 466

The following BLAST results are available for this feature:

BLAST of NO06G02630.1 vs.

BLAST of NO06G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26289.1	7.900e-171	65.74	protein phosphatase pp2a regulatory subunit b [Nan...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G02630	NO06G02630	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G02630.1	NO06G02630.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G02630.1.cds1	NO06G02630.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G02630.1.cds2	NO06G02630.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G02630.1.cds3	NO06G02630.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G02630.1.cds4	NO06G02630.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G02630.1.cds5	NO06G02630.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G02630.1.cds6	NO06G02630.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G02630.1.cds7	NO06G02630.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:740594..743365-
coding sequence from alignment at chr6:740594..743365-

mRNA sequence

>NO06G02630.1 ID=NO06G02630.1|Name=NO06G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
ATGGAATCAATGGAAGGAGCAACGTGCTCATCAGTGGTGCGCACACCGGA
ATTCAGTCAGTGCTTCGGGGATAAGGCGGCCTTGGAAGAGCTAACAGATG
CGGACCTGCTGACGGCCCTTGAGTTTGATCTCACAGGCGACTACTTGGCA
ACGGGTGATCGGGGAGGGCGTGTGGTGCTTTTTGAGAAGGGCGATGACAT
CAAGCAGGTGACAGCGAACGGACGGCGGAAGTGGGCGTGCAAGTACCGTT
TCTACAGCGAGTTCCAAAGCCACGAGCCAGAATTTGATTACCTCAAGAGC
TTGGAGATCGAGGAGAAGATTAACCAGATCAAGTGGTGCCCGACCACCAA
CAACTCCCACTTCCTCCTCTCGACCAACGACAAAACCATCAAGCTCTGGC
GGATACGGGACCGGCAAATTAAGGAGGCATTGCAACGTCATGAGACCCCA
CCACGGCCAGGTTCCCTCCGCTCCTCGAGCCCTGCTCGTTCATCACCCTT
TCGAGGCGCCGTAGGAGGCGGAGGAGTACGAGGCGGAGGAGTACGAGGAG
GAGGAGAAGGAGGAGGAGGGGCAGTGGCGGAGGAAGTGCTGCAATTCCCA
CGGTTGTACACCAAGGGATCAATGGTGACAGCGACGAATAAGCGGTGCTT
TAGCAATGCCCACGCATACCACATTAACTCCTTGTCGGTCAACGTGGACG
GACAGACGTTTTTGTCTGCGGATGACCTGAGGATCAATTTGTGGAGTCTG
GAAAATCACCAGCAGGCATACAACATCGTGGACCTCAAGCCGGCCAACAT
GGACGACCTAAATGAGGTCATCACCAGCGCCTCCTTCCATCCCTCCGCAT
CCAACCTCGTCATGTTCTCTTCCTCCAAAGGCGCAGTGCGTGTGGCGGAC
CTACGGACGTCCGCCTTGTGCACCCAGCCATCCCTCGTCCTCGAGAATCA
CATCGAGGACCCCATCGACCGTTCCTTTTTCTCGGAAATTATCTCGTCGG
TGGCCGACGCCCGATATTGTAGAGGGGACGGCCGCTTCCTCTTCACGCGC
GATTACCTCACGGTCAAGGTCTGGGACATGCATATGCCGTCTGCTCCCGT
ATCCATTATGACCGTCAACCCTTCCCTCCGTCCCCTCCTCGCGGACTTGT
ATGAAACGGATGCGATGTTTGATAAATTTGAATGTGCCGTTAGTGGAAAC
GGCCAGTACTTCGCTACCGGGACGTATAATAATACCTTCCAGGTGCGCGA
TAGGGAGGGAAGGGCGGAGGCGAGCCATGCGGAGGTCTCTAGAACAGTTG
GGAGGAAACAGAGGGTAGGCGGAGGGGGAGGAAGAGGAGGAATGATGAGG
ATGGAAGCAGGAAAAAGGGGTGGCCGGGGAGGAAGGGGCGGAGGGGTGGA
TGGAGGGGGGGACGTGATGGCTTTTGACAAGAAGGTAATGCATTTGGCCT
GGCACCCGGAAAGAGACGTATTGGCGGTCGCGGGCTTGAATCGCTTGTAT
TTCTATACAGTGTAA

protein sequence of NO06G02630.1

>NO06G02630.1-protein ID=NO06G02630.1-protein|Name=NO06G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MESMEGATCSSVVRTPEFSQCFGDKAALEELTDADLLTALEFDLTGDYLA
TGDRGGRVVLFEKGDDIKQVTANGRRKWACKYRFYSEFQSHEPEFDYLKS
LEIEEKINQIKWCPTTNNSHFLLSTNDKTIKLWRIRDRQIKEALQRHETP
PRPGSLRSSSPARSSPFRGAVGGGGVRGGGVRGGGEGGGGAVAEEVLQFP
RLYTKGSMVTATNKRCFSNAHAYHINSLSVNVDGQTFLSADDLRINLWSL
ENHQQAYNIVDLKPANMDDLNEVITSASFHPSASNLVMFSSSKGAVRVAD
LRTSALCTQPSLVLENHIEDPIDRSFFSEIISSVADARYCRGDGRFLFTR
DYLTVKVWDMHMPSAPVSIMTVNPSLRPLLADLYETDAMFDKFECAVSGN
GQYFATGTYNNTFQVRDREGRAEASHAEVSRTVGRKQRVGGGGGRGGMMR
MEAGKRGGRGGRGGGVDGGGDVMAFDKKVMHLAWHPERDVLAVAGLNRLY
FYTV*

mRNA from alignment at chr6:740594..743365-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G02630.1 ID=NO06G02630.1|Name=NO06G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2772bp|location=Sequence derived from alignment at chr6:740594..743365- (Nannochloropsis oceanica)
ATGGAATCAATGGAAGGAGCAACGTGCTCATCAGTGGTGCGCACACCGGA
ATTCAGTCAGTGCTTCGGGGATAAGGCGGCCTTGGAAGAGCTAACAGATG
GTACGCGTGGATGGGGTCGGTAGGGGATGGGAGAGGGGGAGGGTTGTCTG
CTGGCAGCACGATCTGCTTCATCCGCTAACGGATTGGGATATTAAAGAAT
ACACGTGTGTCGCCTGCCGCGCCACATATCGTCCACCGCCCTCTGACGCA
CGCAAATTCTCTCTCTCCTTCCCCTCTCCCCCCTCCCCCCTCCCTCCTCC
CTCCCGTCCTCTTCCTGTGCTCAGCGGACCTGCTGACGGCCCTTGAGTTT
GATCTCACAGGCGACTACTTGGCAACGGGTGATCGGGGAGGGCGTGTGGT
GCTTTTTGAGAAGGGCGATGACATCAAGCAGGTGCGGACGCGTGTGTGTA
TTATCGATAGGGTATTTATTGGAGGTGGTGATTGAGGGCCCGCAGTGAGC
AGGCGTGTCCAAGATCCTCTTCGACTGCCCCCCAATTTATTGCCTTTACC
CTTATGTCTATCATCCTCTATTCACAGACAGAGCCGCCTGGTTGGTCTCC
CTATTTACTCTAAACCACTCATTCTCCCTCCCTCCCTGCCTCCCTCTTTC
CTTCCCTCCGTTTCTTCCTACTTGCCACCCTTCCCTTTCTTTGATCCACA
CAACAGGTGACAGCGAACGGACGGCGGAAGTGGGCGTGCAAGTACCGTTT
CTACAGCGAGTTCCAAAGCCACGAGCCAGAATTTGATTACCTCAAGAGGT
ATTGCCTTTCCCCCCTCTCTCCCTTCCTTCCCTCATCCCTCTTTCCCTCT
TTCTGTTTGTCATCGTCGTTGAACACTACTCATACCTCTTCCCTCCCTCC
CTCCCCTCCTCCCTCCTGCCTTCCTTGCTTACCCCAAACCCAACGCCCCA
AGCTTGGAGATCGAGGAGAAGATTAACCAGATCAAGTGGTGCCCGACCAC
CAACAACTCCCACTTCCTCCTCTCGACCAACGGTACGTTCTCCCTCCTCC
CTCTACCTGCATGTCCGGCCTTATTCATCTATTTCCCTCTTAAGAAGGAA
CCTATTCTTTACTTTTATCTCTTGAGAAAAACAAGTTTACACACAAGGTA
TCCCCTTCTTTCATTAACCTGACCAAACAACAGCCTCCTCTCCTCGTACC
CATCAAAAGAAACGCCTTCCCCTCCCTGCACCCAGCCCCACTTACCCCGC
TCCCTCCCTCCTTCCCTCCCTCCGTTCCTCCCTCCGTCCCTCCCTCCTCC
CAGACAAAACCATCAAGCTCTGGCGGATACGGGACCGGCAAATTAAGGAG
GCATTGCAACGTCATGAGACCCCACCACGGCCAGGTTCCCTCCGCTCCTC
GAGCCCTGCTCGTTCATCACCCTTTCGAGGCGCCGTAGGAGGCGGAGGAG
TACGAGGCGGAGGAGTACGAGGAGGAGGAGAAGGAGGAGGAGGGGCAGTG
GCGGAGGAAGTGCTGCAATTCCCACGGTTGTACACCAAGGGATCAATGGT
GACAGCGACGAATAAGCGGTGCTTTAGCAATGCCCACGCATACCACATTA
ACTCCTTGTCGGTCAACGTGGACGGACAGACGTTTTTGTCTGCGGATGAC
CTGAGGATCAATTTGTGGAGTCTGGAAAATCACCAGCAGGTACGCCGCCG
CCCCCCATCCCCCTCTCCCTCCCTCCCTCCCTCCTTCCCTCTCTTCTTCC
CCCCCCCCTTTCTGGAACATTCGGTACAGTCTCTGTCTGCCTCCTTGCTT
CCATAGAACACCAACCAACCTACCTTCCGCCCTTCCGCCCTCCCGCCCTC
CCTCCATTCTTCTTTAGGCATACAACATCGTGGACCTCAAGCCGGCCAAC
ATGGACGACCTAAATGAGGTCATCACCAGCGCCTCCTTCCATCCCTCCGC
ATCCAACCTCGTCATGTTCTCTTCCTCCAAAGGCGCAGTGCGTGTGGCGG
ACCTACGGACGTCCGCCTTGTGCACCCAGCCATCCCTCGTCCTCGAGAAT
CACATCGAGGTTCGTGGCCTCCCTCGCTCCCTCCTTCTCTCCCTCGCTCC
ATGACCCTTGTCTGCCTTCTGTATGTGCAGTTGTCGCACCCGCGAGATGC
ACTCTTTCGTCAACCCCCCAACTAAGAGTTCCTTCCTCCCTCCCTCACTC
TCTCTCTCCCTCAGGACCCCATCGACCGTTCCTTTTTCTCGGAAATTATC
TCGTCGGTGGCCGACGCCCGATATTGTAGAGGGGACGGCCGCTTCCTCTT
CACGCGCGATTACCTCACGGTCAAGGTCTGGGACATGCATATGCCGTCTG
CTCCCGTATCCATTATGACCGTCAACCCTTCCCTCCGTCCCCTCCTCGCG
GACTTGTATGAAACGGATGCGATGTTTGATAAATTTGAATGTGCCGTTAG
TGGAAACGGCCAGTACTTCGCTACCGGGACGTATAATAATACCTTCCAGG
TGCGCGATAGGGAGGGAAGGGCGGAGGCGAGCCATGCGGAGGTCTCTAGA
ACAGTTGGGAGGAAACAGAGGGTAGGCGGAGGGGGAGGAAGAGGAGGAAT
GATGAGGATGGAAGCAGGAAAAAGGGGTGGCCGGGGAGGAAGGGGCGGAG
GGGTGGATGGAGGGGGGGACGTGATGGCTTTTGACAAGAAGGTAATGCAT
TTGGCCTGGCACCCGGAAAGAGACGTATTGGCGGTCGCGGGCTTGAATCG
CTTGTATTTCTATACAGTGTAA

Coding sequence (CDS) from alignment at chr6:740594..743365-

>NO06G02630.1 ID=NO06G02630.1|Name=NO06G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=1515bp|location=Sequence derived from alignment at chr6:740594..743365- (Nannochloropsis oceanica)
ATGGAATCAATGGAAGGAGCAACGTGCTCATCAGTGGTGCGCACACCGGA
ATTCAGTCAGTGCTTCGGGGATAAGGCGGCCTTGGAAGAGCTAACAGATG
CGGACCTGCTGACGGCCCTTGAGTTTGATCTCACAGGCGACTACTTGGCA
ACGGGTGATCGGGGAGGGCGTGTGGTGCTTTTTGAGAAGGGCGATGACAT
CAAGCAGGTGACAGCGAACGGACGGCGGAAGTGGGCGTGCAAGTACCGTT
TCTACAGCGAGTTCCAAAGCCACGAGCCAGAATTTGATTACCTCAAGAGC
TTGGAGATCGAGGAGAAGATTAACCAGATCAAGTGGTGCCCGACCACCAA
CAACTCCCACTTCCTCCTCTCGACCAACGACAAAACCATCAAGCTCTGGC
GGATACGGGACCGGCAAATTAAGGAGGCATTGCAACGTCATGAGACCCCA
CCACGGCCAGGTTCCCTCCGCTCCTCGAGCCCTGCTCGTTCATCACCCTT
TCGAGGCGCCGTAGGAGGCGGAGGAGTACGAGGCGGAGGAGTACGAGGAG
GAGGAGAAGGAGGAGGAGGGGCAGTGGCGGAGGAAGTGCTGCAATTCCCA
CGGTTGTACACCAAGGGATCAATGGTGACAGCGACGAATAAGCGGTGCTT
TAGCAATGCCCACGCATACCACATTAACTCCTTGTCGGTCAACGTGGACG
GACAGACGTTTTTGTCTGCGGATGACCTGAGGATCAATTTGTGGAGTCTG
GAAAATCACCAGCAGGCATACAACATCGTGGACCTCAAGCCGGCCAACAT
GGACGACCTAAATGAGGTCATCACCAGCGCCTCCTTCCATCCCTCCGCAT
CCAACCTCGTCATGTTCTCTTCCTCCAAAGGCGCAGTGCGTGTGGCGGAC
CTACGGACGTCCGCCTTGTGCACCCAGCCATCCCTCGTCCTCGAGAATCA
CATCGAGGACCCCATCGACCGTTCCTTTTTCTCGGAAATTATCTCGTCGG
TGGCCGACGCCCGATATTGTAGAGGGGACGGCCGCTTCCTCTTCACGCGC
GATTACCTCACGGTCAAGGTCTGGGACATGCATATGCCGTCTGCTCCCGT
ATCCATTATGACCGTCAACCCTTCCCTCCGTCCCCTCCTCGCGGACTTGT
ATGAAACGGATGCGATGTTTGATAAATTTGAATGTGCCGTTAGTGGAAAC
GGCCAGTACTTCGCTACCGGGACGTATAATAATACCTTCCAGGTGCGCGA
TAGGGAGGGAAGGGCGGAGGCGAGCCATGCGGAGGTCTCTAGAACAGTTG
GGAGGAAACAGAGGGTAGGCGGAGGGGGAGGAAGAGGAGGAATGATGAGG
ATGGAAGCAGGAAAAAGGGGTGGCCGGGGAGGAAGGGGCGGAGGGGTGGA
TGGAGGGGGGGACGTGATGGCTTTTGACAAGAAGGTAATGCATTTGGCCT
GGCACCCGGAAAGAGACGTATTGGCGGTCGCGGGCTTGAATCGCTTGTAT
TTCTATACAGTGTAA

Synonyms

Publications