NO06G02550.1, NO06G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02550.1
Unique NameNO06G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1776
Alignment locationchr6:716932..718707 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:716932..718707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02550.1 vs.
Match: CBN77478.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 168.3 bits (425), Expect = 6.500e-38
Identity = 157/486 (32.30%), Postives = 250/486 (51.44%), Query Frame = 0
Query:   56 FDRQRDRLLIRENFAKAVAQDTQAFRKTEWEVRTDALAVSRHEQRQRQQAAAQALAAEAKVAQLLKDQQCRETAKKNALSQQGEVGRTTSRLRPRTDPATLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDGCDSARLLDSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVEELDEAESHKQALQAQRKRETVVTLETQIALGQAEQQKAKAAQAAEDAEELAQIAADLKRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRDLALLEHAMALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAVDAVRQAKEDEVWEQREAMFQARKKKHERLWQQVDAGRQEQLRYKALAGERVAEEAAREVEKWKLEQAAGMEEERRAQEAH---RAAVKENQEMLQQQVESRQRRERWEQQQEYLRTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKW 539
            F R+R++    E   +++A   +      WE +T     SR         A +  + E   A  L  ++ R     N   +Q E     S         T++ RK  + ++A  L+   EAARR  VQ C DRQWRD CD AR LDS+A    +T  + +Q+ EK  R+++ A+ +    A IR  +  L+  E   +  + +R +     L TQ+A     +++     A +D +EL ++ A ++  +E+A A++  A ARG +VR+FN+ R E     AE+ R++DL LL++A+  +    A EKAK        R Y +YL+E M KE+ DE   D +RQ  E  +W+QR+A  +A+    E L +QV  GRQEQ+R KAL   R  E+ A ++E+ +L++ + + EE R +E     R  + +N   L+ Q+   + R   EQQ+EYLR K M+  E    +R + QAG+  T+ PL+  +W
Sbjct:   18 FARKREKERRWEQSVESIAATDKVIAFANWENKTAGAIASR-------AGADRVRSLEGADADALLARRRRVADLYNLEMEQWEHEILNSA-------ETMEERKTRILDKATKLKNAREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEENARQEEFHMAKIRERIAYLEAQEKAAEEKRERRNQLMRSDLNTQVAYNADRRRQLWEQTARDDLKELNELRAIVRAEQEKAEAKKKEAHARGAEVRDFNEARREMRVVAAEQAREQDLVLLDYAIEKDKAGEAEEKAKKEEEQRVLRQYNEYLKEQMAKEAADEAQYDEIRQEAETRIWDQRDAQLKAQNDAREALMKQVHRGRQEQIRLKAL---RDDEQLATDLEQARLDRESFLAEEEREREKEMRKRQELLDNTAKLRGQMAGARARAEREQQEEYLRVKQMEAYERRHRERLEKQAGVVITHHPLKHTQW 486          
The following BLAST results are available for this feature:
BLAST of NO06G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77478.16.500e-3832.30conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02550NO06G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02550.1NO06G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02550.1.cds1NO06G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02550.1 ID=NO06G02550.1|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp
CATATTTGCATTGTTCTACGAAATGCCACGCCCGGCATTATTATCTCGAT
GCCACCTTTTTTGATTGACAATGGGTCTACCCACATTAAGTCTCGACACG
GCTGCCCCATTACTTCGCCTACGCATCTGTCCCATGTTCACCCCACCGCC
ATTTCTGTGCCCGACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCA
TGTCCTTGCGTGCAGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGT
GATCGCCTCTTGATTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACAC
CCAAGCATTTCGCAAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCG
TCAGTCGGCACGAGCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTA
GCGGCAGAAGCCAAAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGA
GACTGCTAAGAAGAATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGA
CCAGCCGTCTCCGGCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAG
GCAGCCCTCCAAGAGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGC
ACGTCGGGCATTGGTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGAT
GCGATAGTGCGCGTTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACC
GAGGCTCAGCAGCAACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGT
GGCTAAACATGACACTGCTTTTCACGCCAATATCAGACGACATGTCGAAG
AATTGGATGAGGCGGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAG
CGGGAGACGGTGGTGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGA
GCAACAGAAAGCCAAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCG
CACAGATTGCGGCGGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGT
CGAGACGCGGCTTGGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCG
GCGGTTGGAGCAGGTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATT
TGGCGTTGCTGGAGCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGG
GAGAAGGCAAAAGATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACA
GTATTTGGAGGAAGTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGG
ATGCGGTGAGGCAAGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCC
ATGTTCCAGGCGCGGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGA
TGCGGGACGACAGGAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGG
TGGCGGAGGAAGCAGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCG
GCTGGGATGGAAGAGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGT
AAAAGAGAATCAGGAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGAC
GGGAGCGGTGGGAGCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAG
AAGGAGGAAGCAGCCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGC
ACGGACGTATTTTCCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGA
AAAGACACATGACGAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAA
ATCATGCCAAAGAAATGTAAATCGAG
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protein sequence of NO06G02550.1

>NO06G02550.1-protein ID=NO06G02550.1-protein|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MGLPTLSLDTAAPLLRLRICPMFTPPPFLCPTDVTLSSPLLLSMSLRAAA
TPKQSFDRQRDRLLIRENFAKAVAQDTQAFRKTEWEVRTDALAVSRHEQR
QRQQAAAQALAAEAKVAQLLKDQQCRETAKKNALSQQGEVGRTTSRLRPR
TDPATLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDGCDSARLL
DSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVEELDEAES
HKQALQAQRKRETVVTLETQIALGQAEQQKAKAAQAAEDAEELAQIAADL
KRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRDLALLEHA
MALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAVDAVRQAK
EDEVWEQREAMFQARKKKHERLWQQVDAGRQEQLRYKALAGERVAEEAAR
EVEKWKLEQAAGMEEERRAQEAHRAAVKENQEMLQQQVESRQRRERWEQQ
QEYLRTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKWID*
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mRNA from alignment at chr6:716932..718707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02550.1 ID=NO06G02550.1|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr6:716932..718707- (Nannochloropsis oceanica)
CATATTTGCATTGTTCTACGAAATGCCACGCCCGGCATTATTATCTCGAT GCCACCTTTTTTGATTGACAATGGGTCTACCCACATTAAGTCTCGACACG GCTGCCCCATTACTTCGCCTACGCATCTGTCCCATGTTCACCCCACCGCC ATTTCTGTGCCCGACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCA TGTCCTTGCGTGCAGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGT GATCGCCTCTTGATTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACAC CCAAGCATTTCGCAAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCG TCAGTCGGCACGAGCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTA GCGGCAGAAGCCAAAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGA GACTGCTAAGAAGAATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGA CCAGCCGTCTCCGGCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAG GCAGCCCTCCAAGAGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGC ACGTCGGGCATTGGTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGAT GCGATAGTGCGCGTTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACC GAGGCTCAGCAGCAACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGT GGCTAAACATGACACTGCTTTTCACGCCAATATCAGACGACATGTCGAAG AATTGGATGAGGCGGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAG CGGGAGACGGTGGTGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGA GCAACAGAAAGCCAAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCG CACAGATTGCGGCGGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGT CGAGACGCGGCTTGGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCG GCGGTTGGAGCAGGTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATT TGGCGTTGCTGGAGCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGG GAGAAGGCAAAAGATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACA GTATTTGGAGGAAGTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGG ATGCGGTGAGGCAAGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCC ATGTTCCAGGCGCGGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGA TGCGGGACGACAGGAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGG TGGCGGAGGAAGCAGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCG GCTGGGATGGAAGAGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGT AAAAGAGAATCAGGAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGAC GGGAGCGGTGGGAGCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAG AAGGAGGAAGCAGCCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGC ACGGACGTATTTTCCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGA AAAGACACATGACGAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAA ATCATGCCAAAGAAATGTAAATCGAG
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Coding sequence (CDS) from alignment at chr6:716932..718707-

>NO06G02550.1 ID=NO06G02550.1|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr6:716932..718707- (Nannochloropsis oceanica)
ATGGGTCTACCCACATTAAGTCTCGACACGGCTGCCCCATTACTTCGCCT
ACGCATCTGTCCCATGTTCACCCCACCGCCATTTCTGTGCCCGACAGACG
TTACACTTTCCTCCCCCCTGCTTCTGTCCATGTCCTTGCGTGCAGCAGCC
ACGCCTAAGCAAAGCTTTGACCGACAACGTGATCGCCTCTTGATTCGTGA
AAATTTTGCAAAGGCCGTGGCTCAGGACACCCAAGCATTTCGCAAGACTG
AATGGGAAGTCCGGACCGATGCCCTGGCCGTCAGTCGGCACGAGCAACGA
CAACGCCAGCAAGCAGCCGCTCAAGCGCTAGCGGCAGAAGCCAAAGTCGC
CCAGCTTCTTAAGGATCAACAGTGTCGTGAGACTGCTAAGAAGAATGCAC
TCTCTCAGCAAGGAGAAGTGGGACGCACGACCAGCCGTCTCCGGCCCAGG
ACCGACCCAGCGACGTTGAAAGCGCGTAAGGCAGCCCTCCAAGAGCAGGC
GTATGCACTCCAAGCTCGCAATGAGGCAGCACGTCGGGCATTGGTGCAAT
CGTGTCTCGATCGACAGTGGCGTGATGGATGCGATAGTGCGCGTTTGCTC
GACAGTCAGGCCCTGCAGCGAGTCATGACCGAGGCTCAGCAGCAACAGCT
CATAGAGAAGCAAGTCCGCCAGGATCAAGTGGCTAAACATGACACTGCTT
TTCACGCCAATATCAGACGACATGTCGAAGAATTGGATGAGGCGGAGAGC
CACAAGCAAGCGTTGCAGGCGCAGCGAAAGCGGGAGACGGTGGTGACGCT
TGAAACGCAAATCGCCCTTGGACAGGCCGAGCAACAGAAAGCCAAGGCCG
CCCAGGCTGCGGAGGATGCCGAAGAGCTCGCACAGATTGCGGCGGATTTA
AAGCGAAACGAAGAACAAGCTACTGCGCGTCGAGACGCGGCTTGGGCGAG
AGGGCAAGACGTCAGGGAGTTCAACGATCGGCGGTTGGAGCAGGTACGTG
CACGGGCGGAGGAGGAGCGGCAGCGGGATTTGGCGTTGCTGGAGCATGCA
ATGGCACTAGAAGCTAAGGAGGTGGCGCGGGAGAAGGCAAAAGATACCAG
GGCCCATTTGGAAGCCAGGATTTACCGACAGTATTTGGAGGAAGTAATGA
AGAAGGAATCGGAGGACGAGCGGGCGGTGGATGCGGTGAGGCAAGCAAAG
GAGGATGAGGTGTGGGAGCAGCGCGAAGCCATGTTCCAGGCGCGGAAAAA
GAAACACGAGAGATTATGGCAGCAGGTAGATGCGGGACGACAGGAGCAGT
TGCGATACAAAGCCTTGGCAGGAGAGAGGGTGGCGGAGGAAGCAGCGAGG
GAGGTAGAAAAGTGGAAGCTGGAGCAGGCGGCTGGGATGGAAGAGGAGCG
ACGAGCACAGGAAGCTCATCGAGCGGCCGTAAAAGAGAATCAGGAGATGT
TACAGCAGCAGGTGGAGTCGCGACAGCGACGGGAGCGGTGGGAGCAGCAG
CAGGAGTATTTAAGGACAAAGCATATGCAGAAGGAGGAAGCAGCCCTAAT
GCAACGTCAGAAGAGCCAGGCTGGGATTGCACGGACGTATTTTCCTCTGC
GCTTGGAAAAGTGGATAGATTAG
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Synonyms
Publications