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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:716932..718707 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02550.1 vs.
Match: CBN77478.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 168.3 bits (425), Expect = 6.500e-38 Identity = 157/486 (32.30%), Postives = 250/486 (51.44%), Query Frame = 0
Query: 56 FDRQRDRLLIRENFAKAVAQDTQAFRKTEWEVRTDALAVSRHEQRQRQQAAAQALAAEAKVAQLLKDQQCRETAKKNALSQQGEVGRTTSRLRPRTDPATLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDGCDSARLLDSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVEELDEAESHKQALQAQRKRETVVTLETQIALGQAEQQKAKAAQAAEDAEELAQIAADLKRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRDLALLEHAMALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAVDAVRQAKEDEVWEQREAMFQARKKKHERLWQQVDAGRQEQLRYKALAGERVAEEAAREVEKWKLEQAAGMEEERRAQEAH---RAAVKENQEMLQQQVESRQRRERWEQQQEYLRTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKW 539
F R+R++ E +++A + WE +T SR A + + E A L ++ R N +Q E S T++ RK + ++A L+ EAARR VQ C DRQWRD CD AR LDS+A +T + +Q+ EK R+++ A+ + A IR + L+ E + + +R + L TQ+A +++ A +D +EL ++ A ++ +E+A A++ A ARG +VR+FN+ R E AE+ R++DL LL++A+ + A EKAK R Y +YL+E M KE+ DE D +RQ E +W+QR+A +A+ E L +QV GRQEQ+R KAL R E+ A ++E+ +L++ + + EE R +E R + +N L+ Q+ + R EQQ+EYLR K M+ E +R + QAG+ T+ PL+ +W
Sbjct: 18 FARKREKERRWEQSVESIAATDKVIAFANWENKTAGAIASR-------AGADRVRSLEGADADALLARRRRVADLYNLEMEQWEHEILNSA-------ETMEERKTRILDKATKLKNAREAARRNYVQECYDRQWRDACDDARTLDSKANTEWVTAQRWEQVAEKAAREEENARQEEFHMAKIRERIAYLEAQEKAAEEKRERRNQLMRSDLNTQVAYNADRRRQLWEQTARDDLKELNELRAIVRAEQEKAEAKKKEAHARGAEVRDFNEARREMRVVAAEQAREQDLVLLDYAIEKDKAGEAEEKAKKEEEQRVLRQYNEYLKEQMAKEAADEAQYDEIRQEAETRIWDQRDAQLKAQNDAREALMKQVHRGRQEQIRLKAL---RDDEQLATDLEQARLDRESFLAEEEREREKEMRKRQELLDNTAKLRGQMAGARARAEREQQEEYLRVKQMEAYERRHRERLEKQAGVVITHHPLKHTQW 486
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02550.1 ID=NO06G02550.1|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp CATATTTGCATTGTTCTACGAAATGCCACGCCCGGCATTATTATCTCGAT GCCACCTTTTTTGATTGACAATGGGTCTACCCACATTAAGTCTCGACACG GCTGCCCCATTACTTCGCCTACGCATCTGTCCCATGTTCACCCCACCGCC ATTTCTGTGCCCGACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCA TGTCCTTGCGTGCAGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGT GATCGCCTCTTGATTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACAC CCAAGCATTTCGCAAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCG TCAGTCGGCACGAGCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTA GCGGCAGAAGCCAAAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGA GACTGCTAAGAAGAATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGA CCAGCCGTCTCCGGCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAG GCAGCCCTCCAAGAGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGC ACGTCGGGCATTGGTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGAT GCGATAGTGCGCGTTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACC GAGGCTCAGCAGCAACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGT GGCTAAACATGACACTGCTTTTCACGCCAATATCAGACGACATGTCGAAG AATTGGATGAGGCGGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAG CGGGAGACGGTGGTGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGA GCAACAGAAAGCCAAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCG CACAGATTGCGGCGGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGT CGAGACGCGGCTTGGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCG GCGGTTGGAGCAGGTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATT TGGCGTTGCTGGAGCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGG GAGAAGGCAAAAGATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACA GTATTTGGAGGAAGTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGG ATGCGGTGAGGCAAGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCC ATGTTCCAGGCGCGGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGA TGCGGGACGACAGGAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGG TGGCGGAGGAAGCAGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCG GCTGGGATGGAAGAGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGT AAAAGAGAATCAGGAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGAC GGGAGCGGTGGGAGCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAG AAGGAGGAAGCAGCCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGC ACGGACGTATTTTCCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGA AAAGACACATGACGAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAA ATCATGCCAAAGAAATGTAAATCGAG back to topprotein sequence of NO06G02550.1 >NO06G02550.1-protein ID=NO06G02550.1-protein|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp MGLPTLSLDTAAPLLRLRICPMFTPPPFLCPTDVTLSSPLLLSMSLRAAA TPKQSFDRQRDRLLIRENFAKAVAQDTQAFRKTEWEVRTDALAVSRHEQR QRQQAAAQALAAEAKVAQLLKDQQCRETAKKNALSQQGEVGRTTSRLRPR TDPATLKARKAALQEQAYALQARNEAARRALVQSCLDRQWRDGCDSARLL DSQALQRVMTEAQQQQLIEKQVRQDQVAKHDTAFHANIRRHVEELDEAES HKQALQAQRKRETVVTLETQIALGQAEQQKAKAAQAAEDAEELAQIAADL KRNEEQATARRDAAWARGQDVREFNDRRLEQVRARAEEERQRDLALLEHA MALEAKEVAREKAKDTRAHLEARIYRQYLEEVMKKESEDERAVDAVRQAK EDEVWEQREAMFQARKKKHERLWQQVDAGRQEQLRYKALAGERVAEEAAR EVEKWKLEQAAGMEEERRAQEAHRAAVKENQEMLQQQVESRQRRERWEQQ QEYLRTKHMQKEEAALMQRQKSQAGIARTYFPLRLEKWID* back to topmRNA from alignment at chr6:716932..718707- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02550.1 ID=NO06G02550.1|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at chr6:716932..718707- (Nannochloropsis oceanica) CATATTTGCATTGTTCTACGAAATGCCACGCCCGGCATTATTATCTCGAT
GCCACCTTTTTTGATTGACAATGGGTCTACCCACATTAAGTCTCGACACG
GCTGCCCCATTACTTCGCCTACGCATCTGTCCCATGTTCACCCCACCGCC
ATTTCTGTGCCCGACAGACGTTACACTTTCCTCCCCCCTGCTTCTGTCCA
TGTCCTTGCGTGCAGCAGCCACGCCTAAGCAAAGCTTTGACCGACAACGT
GATCGCCTCTTGATTCGTGAAAATTTTGCAAAGGCCGTGGCTCAGGACAC
CCAAGCATTTCGCAAGACTGAATGGGAAGTCCGGACCGATGCCCTGGCCG
TCAGTCGGCACGAGCAACGACAACGCCAGCAAGCAGCCGCTCAAGCGCTA
GCGGCAGAAGCCAAAGTCGCCCAGCTTCTTAAGGATCAACAGTGTCGTGA
GACTGCTAAGAAGAATGCACTCTCTCAGCAAGGAGAAGTGGGACGCACGA
CCAGCCGTCTCCGGCCCAGGACCGACCCAGCGACGTTGAAAGCGCGTAAG
GCAGCCCTCCAAGAGCAGGCGTATGCACTCCAAGCTCGCAATGAGGCAGC
ACGTCGGGCATTGGTGCAATCGTGTCTCGATCGACAGTGGCGTGATGGAT
GCGATAGTGCGCGTTTGCTCGACAGTCAGGCCCTGCAGCGAGTCATGACC
GAGGCTCAGCAGCAACAGCTCATAGAGAAGCAAGTCCGCCAGGATCAAGT
GGCTAAACATGACACTGCTTTTCACGCCAATATCAGACGACATGTCGAAG
AATTGGATGAGGCGGAGAGCCACAAGCAAGCGTTGCAGGCGCAGCGAAAG
CGGGAGACGGTGGTGACGCTTGAAACGCAAATCGCCCTTGGACAGGCCGA
GCAACAGAAAGCCAAGGCCGCCCAGGCTGCGGAGGATGCCGAAGAGCTCG
CACAGATTGCGGCGGATTTAAAGCGAAACGAAGAACAAGCTACTGCGCGT
CGAGACGCGGCTTGGGCGAGAGGGCAAGACGTCAGGGAGTTCAACGATCG
GCGGTTGGAGCAGGTACGTGCACGGGCGGAGGAGGAGCGGCAGCGGGATT
TGGCGTTGCTGGAGCATGCAATGGCACTAGAAGCTAAGGAGGTGGCGCGG
GAGAAGGCAAAAGATACCAGGGCCCATTTGGAAGCCAGGATTTACCGACA
GTATTTGGAGGAAGTAATGAAGAAGGAATCGGAGGACGAGCGGGCGGTGG
ATGCGGTGAGGCAAGCAAAGGAGGATGAGGTGTGGGAGCAGCGCGAAGCC
ATGTTCCAGGCGCGGAAAAAGAAACACGAGAGATTATGGCAGCAGGTAGA
TGCGGGACGACAGGAGCAGTTGCGATACAAAGCCTTGGCAGGAGAGAGGG
TGGCGGAGGAAGCAGCGAGGGAGGTAGAAAAGTGGAAGCTGGAGCAGGCG
GCTGGGATGGAAGAGGAGCGACGAGCACAGGAAGCTCATCGAGCGGCCGT
AAAAGAGAATCAGGAGATGTTACAGCAGCAGGTGGAGTCGCGACAGCGAC
GGGAGCGGTGGGAGCAGCAGCAGGAGTATTTAAGGACAAAGCATATGCAG
AAGGAGGAAGCAGCCCTAATGCAACGTCAGAAGAGCCAGGCTGGGATTGC
ACGGACGTATTTTCCTCTGCGCTTGGAAAAGTGGATAGATTAGAAATTGA
AAAGACACATGACGAGTTCTCTTCGATTTCTGACCCTTGAAGGAGGAAAA
ATCATGCCAAAGAAATGTAAATCGAG back to topCoding sequence (CDS) from alignment at chr6:716932..718707- >NO06G02550.1 ID=NO06G02550.1|Name=NO06G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr6:716932..718707- (Nannochloropsis oceanica) ATGGGTCTACCCACATTAAGTCTCGACACGGCTGCCCCATTACTTCGCCT ACGCATCTGTCCCATGTTCACCCCACCGCCATTTCTGTGCCCGACAGACG TTACACTTTCCTCCCCCCTGCTTCTGTCCATGTCCTTGCGTGCAGCAGCC ACGCCTAAGCAAAGCTTTGACCGACAACGTGATCGCCTCTTGATTCGTGA AAATTTTGCAAAGGCCGTGGCTCAGGACACCCAAGCATTTCGCAAGACTG AATGGGAAGTCCGGACCGATGCCCTGGCCGTCAGTCGGCACGAGCAACGA CAACGCCAGCAAGCAGCCGCTCAAGCGCTAGCGGCAGAAGCCAAAGTCGC CCAGCTTCTTAAGGATCAACAGTGTCGTGAGACTGCTAAGAAGAATGCAC TCTCTCAGCAAGGAGAAGTGGGACGCACGACCAGCCGTCTCCGGCCCAGG ACCGACCCAGCGACGTTGAAAGCGCGTAAGGCAGCCCTCCAAGAGCAGGC GTATGCACTCCAAGCTCGCAATGAGGCAGCACGTCGGGCATTGGTGCAAT CGTGTCTCGATCGACAGTGGCGTGATGGATGCGATAGTGCGCGTTTGCTC GACAGTCAGGCCCTGCAGCGAGTCATGACCGAGGCTCAGCAGCAACAGCT CATAGAGAAGCAAGTCCGCCAGGATCAAGTGGCTAAACATGACACTGCTT TTCACGCCAATATCAGACGACATGTCGAAGAATTGGATGAGGCGGAGAGC CACAAGCAAGCGTTGCAGGCGCAGCGAAAGCGGGAGACGGTGGTGACGCT TGAAACGCAAATCGCCCTTGGACAGGCCGAGCAACAGAAAGCCAAGGCCG CCCAGGCTGCGGAGGATGCCGAAGAGCTCGCACAGATTGCGGCGGATTTA AAGCGAAACGAAGAACAAGCTACTGCGCGTCGAGACGCGGCTTGGGCGAG AGGGCAAGACGTCAGGGAGTTCAACGATCGGCGGTTGGAGCAGGTACGTG CACGGGCGGAGGAGGAGCGGCAGCGGGATTTGGCGTTGCTGGAGCATGCA ATGGCACTAGAAGCTAAGGAGGTGGCGCGGGAGAAGGCAAAAGATACCAG GGCCCATTTGGAAGCCAGGATTTACCGACAGTATTTGGAGGAAGTAATGA AGAAGGAATCGGAGGACGAGCGGGCGGTGGATGCGGTGAGGCAAGCAAAG GAGGATGAGGTGTGGGAGCAGCGCGAAGCCATGTTCCAGGCGCGGAAAAA GAAACACGAGAGATTATGGCAGCAGGTAGATGCGGGACGACAGGAGCAGT TGCGATACAAAGCCTTGGCAGGAGAGAGGGTGGCGGAGGAAGCAGCGAGG GAGGTAGAAAAGTGGAAGCTGGAGCAGGCGGCTGGGATGGAAGAGGAGCG ACGAGCACAGGAAGCTCATCGAGCGGCCGTAAAAGAGAATCAGGAGATGT TACAGCAGCAGGTGGAGTCGCGACAGCGACGGGAGCGGTGGGAGCAGCAG CAGGAGTATTTAAGGACAAAGCATATGCAGAAGGAGGAAGCAGCCCTAAT GCAACGTCAGAAGAGCCAGGCTGGGATTGCACGGACGTATTTTCCTCTGC GCTTGGAAAAGTGGATAGATTAG back to top
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