NO06G02540.1, NO06G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02540.1
Unique NameNO06G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1650
Alignment locationchr6:714614..716263 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:714614..716263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02540.1 vs.
Match: EWM26261.1 (tyrosine aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 609.4 bits (1570), Expect = 1.100e-170
Identity = 332/578 (57.44%), Postives = 395/578 (68.34%), Query Frame = 0 
Query:    1 MPPLGD---VKACQASESMARTVAPRITPSSKTSTRVFAEAKSAEEPFPLSPIRGHARSLGGFPPSSSS-------SSSSPFPTTSIPTTTESPLLP--WRLKSSRQAARISNPVRNIVDHLKPNPAHPLPCLNFALGDPTAYASQGHLLCPDALVDTVIRHAREGLHNGYTCSAGALDARQALARAFSYEGEGAKRLTADDVIIASGGSGALEIAMAALLNEGDAVLIPRPGFALYRVIAQSLGAVTLPYDLLPEKNWAIDMVALEATIVEYNSSS--------------RGIIKAILI------------------NNPSNPCGNIFSLPNLLALLDVARRYCLPIISDEIYGQVCFPGEAFHPLGTLTRDVPVLTIGGLAKQYAVPGWRVGWVLIQDPLGLLEVVEEGGKEEGNEGGGVSVRQGLKNLTQLILGANTLAQSVIPTLFPSTPSHSLETFHANYVHLLAENARFVQEMLLPVVRKERGREGGPIVGVSLPNRPQGTLYMLLKVDARAFGDLDDDVAFCAALLQEENLVLLPGQCFGVPGYVRLVLTPPQPMLAEGLRRLRDFCGRHA 535
            MPPLG+    KACQA   +     P I    KTS+R F E+KSA+EP  L    G     G  PP  +S       +S    P   I +    P L   W L SSR+A+R SNP+RNIVDHLKP+P HP P LNFALGDPTAYA++GHL CPD L++ V +H  EGLHNGY CSAG L+ARQALA A+SY G   K LTA+DVIIASGGSGALEI + ALL+EGDAVLIPRPGFALY+V+A+SLGA  +PYDL+PE NWAID+ AL+A I  YN+                RG+  ++                    NNPSNPCGN+ S  NLL LLDVARR+ LPI++DEIYG++ FPGE FHPLG LT DVPVLT+GG+AKQ+AVPGWRVGW+L+ DPLG L+   E    +  +    S+R+GLKNLTQL+LGANTLAQS IP LF S     LE F+ANYV +L +NA F++  LLPV     G+EG  I GV+L N PQG LY+LLK+    F DL DDVAFCAALL+EENLVLLPGQCFG+PGYVRLVLTPP+P+L EGL RLR FC RHA
Sbjct:    1 MPPLGENARAKACQAPPCLRHPQKPIIPSGCKTSSRAFTESKSADEPTGLQAPAGSIP--GAIPPPFASPDFGLHKASIVAIPPQHIASKLPFPYLAPRWELASSRRASRTSNPLRNIVDHLKPDPEHPSPVLNFALGDPTAYATEGHLRCPDVLIEAVAKHVEEGLHNGYACSAGTLEARQALAAAYSYPGR--KLLTAEDVIIASGGSGALEIVLTALLDEGDAVLIPRPGFALYQVLARSLGAEAVPYDLVPEDNWAIDLAALDAAIAGYNNRQTVGNGGGAGLQGDVRGMPGSMRSDGPSTSRTLPARIKAILVNNPSNPCGNVLSKENLLGLLDVARRHSLPIVADEIYGRLVFPGEFFHPLGALTTDVPVLTVGGMAKQFAVPGWRVGWLLLHDPLGALDGPGEEETCDPPQQRRASLRRGLKNLTQLVLGANTLAQSTIPLLFSSKLGPRLEAFYANYVSILVDNANFIKATLLPVAEGREGKEG--IWGVTLSNFPQGALYLLLKLSLDKFIDLPDDVAFCAALLKEENLVLLPGQCFGIPGYVRLVLTPPRPVLVEGLDRLRTFCFRHA 572
The following BLAST results are available for this feature:
BLAST of NO06G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26261.11.100e-17057.44tyrosine aminotransferase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02540NO06G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02540.1NO06G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02540.1.cds1NO06G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02540.1 ID=NO06G02540.1|Name=NO06G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp
ATGCCGCCCCTCGGGGATGTCAAGGCCTGCCAAGCATCGGAATCCATGGC
AAGGACCGTCGCACCCCGCATCACGCCAAGCTCTAAGACAAGCACCCGGG
TCTTTGCCGAAGCCAAGAGCGCCGAGGAGCCTTTTCCCCTGTCCCCCATC
CGTGGCCATGCCCGAAGCCTAGGCGGATTCCCGCCCTCCTCGTCCTCCTC
CTCCTCGTCCCCATTCCCCACCACCAGCATCCCCACCACCACTGAGAGTC
CCCTATTACCCTGGCGCTTGAAATCTTCACGACAGGCCGCGCGAATCAGT
AACCCCGTCCGCAACATCGTGGACCATCTGAAGCCCAACCCGGCCCATCC
CTTACCGTGCCTTAATTTTGCCTTGGGAGACCCCACTGCCTACGCTAGTC
AGGGGCACTTGCTTTGCCCTGACGCCTTGGTAGATACTGTGATAAGGCAC
GCACGAGAAGGGCTTCATAACGGGTACACATGCTCGGCGGGCGCGTTGGA
TGCCCGCCAAGCGCTGGCCAGGGCCTTTTCATACGAGGGCGAGGGCGCCA
AGCGGTTGACAGCGGACGACGTGATAATTGCGAGTGGGGGATCGGGGGCT
TTGGAGATTGCGATGGCTGCACTGTTGAATGAAGGGGATGCGGTGCTGAT
CCCTCGGCCGGGTTTTGCTCTGTATCGAGTGATTGCACAGAGTTTGGGAG
CGGTGACGTTGCCCTATGATTTGCTGCCGGAGAAGAATTGGGCCATTGAC
ATGGTGGCGCTCGAGGCCACTATTGTGGAGTATAACAGCAGCAGTAGGGG
CATAATCAAAGCGATTTTGATCAACAACCCATCCAACCCCTGCGGCAACA
TATTTTCCTTGCCGAACCTCCTTGCCCTCCTCGATGTAGCCCGTCGGTAC
TGCCTTCCCATCATCTCCGACGAGATTTACGGGCAAGTGTGTTTTCCCGG
GGAGGCATTTCATCCTCTAGGAACACTTACGCGGGATGTCCCCGTTTTGA
CCATAGGGGGGCTGGCGAAGCAGTATGCGGTTCCCGGATGGAGGGTCGGA
TGGGTGCTGATACAAGACCCGTTGGGTTTGCTGGAAGTGGTGGAGGAGGG
AGGGAAGGAAGAAGGCAATGAGGGAGGGGGGGTCAGTGTAAGGCAGGGCC
TGAAGAACCTGACACAGCTGATTTTGGGAGCCAATACACTGGCTCAATCT
GTCATCCCTACTCTGTTTCCCTCCACCCCCTCCCATTCCCTCGAGACGTT
TCATGCCAATTACGTGCACCTCTTGGCAGAAAATGCCCGCTTCGTCCAGG
AAATGTTGTTGCCTGTGGTTAGAAAAGAGAGAGGGAGGGAGGGCGGACCT
ATTGTCGGGGTATCTTTGCCCAACCGCCCCCAAGGGACCCTGTACATGTT
GTTGAAAGTGGATGCGAGAGCCTTTGGAGACTTGGATGACGATGTGGCTT
TTTGCGCGGCCTTGCTGCAGGAGGAGAATCTTGTTTTGTTGCCGGGTCAG
TGCTTTGGAGTGCCGGGATATGTGAGGTTGGTCTTGACGCCGCCGCAGCC
GATGCTGGCGGAGGGATTGCGCCGGCTGCGTGACTTTTGTGGGCGACATG
CGTGTGCTGAAGGAATTCCGGGAGGGGAAGGGGAGGGTGCGGTGGTGTGA
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protein sequence of NO06G02540.1

>NO06G02540.1-protein ID=NO06G02540.1-protein|Name=NO06G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MPPLGDVKACQASESMARTVAPRITPSSKTSTRVFAEAKSAEEPFPLSPI
RGHARSLGGFPPSSSSSSSSPFPTTSIPTTTESPLLPWRLKSSRQAARIS
NPVRNIVDHLKPNPAHPLPCLNFALGDPTAYASQGHLLCPDALVDTVIRH
AREGLHNGYTCSAGALDARQALARAFSYEGEGAKRLTADDVIIASGGSGA
LEIAMAALLNEGDAVLIPRPGFALYRVIAQSLGAVTLPYDLLPEKNWAID
MVALEATIVEYNSSSRGIIKAILINNPSNPCGNIFSLPNLLALLDVARRY
CLPIISDEIYGQVCFPGEAFHPLGTLTRDVPVLTIGGLAKQYAVPGWRVG
WVLIQDPLGLLEVVEEGGKEEGNEGGGVSVRQGLKNLTQLILGANTLAQS
VIPTLFPSTPSHSLETFHANYVHLLAENARFVQEMLLPVVRKERGREGGP
IVGVSLPNRPQGTLYMLLKVDARAFGDLDDDVAFCAALLQEENLVLLPGQ
CFGVPGYVRLVLTPPQPMLAEGLRRLRDFCGRHACAEGIPGGEGEGAVV*
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mRNA from alignment at chr6:714614..716263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02540.1 ID=NO06G02540.1|Name=NO06G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at chr6:714614..716263+ (Nannochloropsis oceanica)
ATGCCGCCCCTCGGGGATGTCAAGGCCTGCCAAGCATCGGAATCCATGGC
AAGGACCGTCGCACCCCGCATCACGCCAAGCTCTAAGACAAGCACCCGGG
TCTTTGCCGAAGCCAAGAGCGCCGAGGAGCCTTTTCCCCTGTCCCCCATC
CGTGGCCATGCCCGAAGCCTAGGCGGATTCCCGCCCTCCTCGTCCTCCTC
CTCCTCGTCCCCATTCCCCACCACCAGCATCCCCACCACCACTGAGAGTC
CCCTATTACCCTGGCGCTTGAAATCTTCACGACAGGCCGCGCGAATCAGT
AACCCCGTCCGCAACATCGTGGACCATCTGAAGCCCAACCCGGCCCATCC
CTTACCGTGCCTTAATTTTGCCTTGGGAGACCCCACTGCCTACGCTAGTC
AGGGGCACTTGCTTTGCCCTGACGCCTTGGTAGATACTGTGATAAGGCAC
GCACGAGAAGGGCTTCATAACGGGTACACATGCTCGGCGGGCGCGTTGGA
TGCCCGCCAAGCGCTGGCCAGGGCCTTTTCATACGAGGGCGAGGGCGCCA
AGCGGTTGACAGCGGACGACGTGATAATTGCGAGTGGGGGATCGGGGGCT
TTGGAGATTGCGATGGCTGCACTGTTGAATGAAGGGGATGCGGTGCTGAT
CCCTCGGCCGGGTTTTGCTCTGTATCGAGTGATTGCACAGAGTTTGGGAG
CGGTGACGTTGCCCTATGATTTGCTGCCGGAGAAGAATTGGGCCATTGAC
ATGGTGGCGCTCGAGGCCACTATTGTGGAGTATAACAGCAGCAGTAGGGG
CATAATCAAAGCGATTTTGATCAACAACCCATCCAACCCCTGCGGCAACA
TATTTTCCTTGCCGAACCTCCTTGCCCTCCTCGATGTAGCCCGTCGGTAC
TGCCTTCCCATCATCTCCGACGAGATTTACGGGCAAGTGTGTTTTCCCGG
GGAGGCATTTCATCCTCTAGGAACACTTACGCGGGATGTCCCCGTTTTGA
CCATAGGGGGGCTGGCGAAGCAGTATGCGGTTCCCGGATGGAGGGTCGGA
TGGGTGCTGATACAAGACCCGTTGGGTTTGCTGGAAGTGGTGGAGGAGGG
AGGGAAGGAAGAAGGCAATGAGGGAGGGGGGGTCAGTGTAAGGCAGGGCC
TGAAGAACCTGACACAGCTGATTTTGGGAGCCAATACACTGGCTCAATCT
GTCATCCCTACTCTGTTTCCCTCCACCCCCTCCCATTCCCTCGAGACGTT
TCATGCCAATTACGTGCACCTCTTGGCAGAAAATGCCCGCTTCGTCCAGG
AAATGTTGTTGCCTGTGGTTAGAAAAGAGAGAGGGAGGGAGGGCGGACCT
ATTGTCGGGGTATCTTTGCCCAACCGCCCCCAAGGGACCCTGTACATGTT
GTTGAAAGTGGATGCGAGAGCCTTTGGAGACTTGGATGACGATGTGGCTT
TTTGCGCGGCCTTGCTGCAGGAGGAGAATCTTGTTTTGTTGCCGGGTCAG
TGCTTTGGAGTGCCGGGATATGTGAGGTTGGTCTTGACGCCGCCGCAGCC
GATGCTGGCGGAGGGATTGCGCCGGCTGCGTGACTTTTGTGGGCGACATG
CGTGTGCTGAAGGAATTCCGGGAGGGGAAGGGGAGGGTGCGGTGGTGTGA
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Coding sequence (CDS) from alignment at chr6:714614..716263+

>NO06G02540.1 ID=NO06G02540.1|Name=NO06G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at chr6:714614..716263+ (Nannochloropsis oceanica)
ATGCCGCCCCTCGGGGATGTCAAGGCCTGCCAAGCATCGGAATCCATGGC
AAGGACCGTCGCACCCCGCATCACGCCAAGCTCTAAGACAAGCACCCGGG
TCTTTGCCGAAGCCAAGAGCGCCGAGGAGCCTTTTCCCCTGTCCCCCATC
CGTGGCCATGCCCGAAGCCTAGGCGGATTCCCGCCCTCCTCGTCCTCCTC
CTCCTCGTCCCCATTCCCCACCACCAGCATCCCCACCACCACTGAGAGTC
CCCTATTACCCTGGCGCTTGAAATCTTCACGACAGGCCGCGCGAATCAGT
AACCCCGTCCGCAACATCGTGGACCATCTGAAGCCCAACCCGGCCCATCC
CTTACCGTGCCTTAATTTTGCCTTGGGAGACCCCACTGCCTACGCTAGTC
AGGGGCACTTGCTTTGCCCTGACGCCTTGGTAGATACTGTGATAAGGCAC
GCACGAGAAGGGCTTCATAACGGGTACACATGCTCGGCGGGCGCGTTGGA
TGCCCGCCAAGCGCTGGCCAGGGCCTTTTCATACGAGGGCGAGGGCGCCA
AGCGGTTGACAGCGGACGACGTGATAATTGCGAGTGGGGGATCGGGGGCT
TTGGAGATTGCGATGGCTGCACTGTTGAATGAAGGGGATGCGGTGCTGAT
CCCTCGGCCGGGTTTTGCTCTGTATCGAGTGATTGCACAGAGTTTGGGAG
CGGTGACGTTGCCCTATGATTTGCTGCCGGAGAAGAATTGGGCCATTGAC
ATGGTGGCGCTCGAGGCCACTATTGTGGAGTATAACAGCAGCAGTAGGGG
CATAATCAAAGCGATTTTGATCAACAACCCATCCAACCCCTGCGGCAACA
TATTTTCCTTGCCGAACCTCCTTGCCCTCCTCGATGTAGCCCGTCGGTAC
TGCCTTCCCATCATCTCCGACGAGATTTACGGGCAAGTGTGTTTTCCCGG
GGAGGCATTTCATCCTCTAGGAACACTTACGCGGGATGTCCCCGTTTTGA
CCATAGGGGGGCTGGCGAAGCAGTATGCGGTTCCCGGATGGAGGGTCGGA
TGGGTGCTGATACAAGACCCGTTGGGTTTGCTGGAAGTGGTGGAGGAGGG
AGGGAAGGAAGAAGGCAATGAGGGAGGGGGGGTCAGTGTAAGGCAGGGCC
TGAAGAACCTGACACAGCTGATTTTGGGAGCCAATACACTGGCTCAATCT
GTCATCCCTACTCTGTTTCCCTCCACCCCCTCCCATTCCCTCGAGACGTT
TCATGCCAATTACGTGCACCTCTTGGCAGAAAATGCCCGCTTCGTCCAGG
AAATGTTGTTGCCTGTGGTTAGAAAAGAGAGAGGGAGGGAGGGCGGACCT
ATTGTCGGGGTATCTTTGCCCAACCGCCCCCAAGGGACCCTGTACATGTT
GTTGAAAGTGGATGCGAGAGCCTTTGGAGACTTGGATGACGATGTGGCTT
TTTGCGCGGCCTTGCTGCAGGAGGAGAATCTTGTTTTGTTGCCGGGTCAG
TGCTTTGGAGTGCCGGGATATGTGAGGTTGGTCTTGACGCCGCCGCAGCC
GATGCTGGCGGAGGGATTGCGCCGGCTGCGTGACTTTTGTGGGCGACATG
CGTGTGCTGAAGGAATTCCGGGAGGGGAAGGGGAGGGTGCGGTGGTGTGA
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Synonyms
Publications