NO06G02440.1, NO06G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02440.1
Unique NameNO06G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1212
Alignment locationchr6:692611..693822 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:692611..693822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02440.1 vs.
Match: XP_024571602.1 (sporangia induced dynein regulatory complex protein [Plasmopara halstedii]; CEG35233.1 sporangia induced dynein regulatory complex protein [Plasmopara halstedii])

HSP 1 Score: 94.4 bits (233), Expect = 8.900e-16
Identity = 78/315 (24.76%), Postives = 158/315 (50.16%), Query Frame = 0 
Query:   62 NQQYENMSMAGLQDAVGQLEQSTADARMSHSDAQAEQDAFHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHYYHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSSSFGSGHRTRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELRHMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREHTRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARDKASLRHTRSRLRFLDAKIQEAERIQL 377
            + +Y+ M ++ L++A+  L+Q    A++  +  Q E+D     + IT Q E++     + E  +++E +  +H +E+R Y  K+  L Y H  NL  V  +    + +E + H     +++ K+Q  +         +     DE +++          L++  E N   +EG C  R   LQ++LELR   + H +EER + H  +L++ HE   K+++NYY ++ ++  + + + ++   T + KA ++      + +   +L +PLA AI     L+  +K   +DK SLR+ ++RL  L  ++ + ++ Q+
Sbjct:   24 SSEYDMMDVSMLKEAIQMLKQQLGKAQVDRNYVQHERDMIESFYDITKQ-EIQDYENQIMEKDREMEIMEDNHRVEVRVYAQKVKHLDYEHKHNLKRVQIDGSNHMDEERDLHEHREVVLRDKKQSLKLERKERDLSNE----DEIEQMNQAHEKNLSKLREQFEKNNAALEGRCQQRLQSLQESLELRCKVDTHEIEERKNMHINDLMKNHEKAFKQIKNYYNDITKDNLRLIDSLKNEIATMKKKAAANSKLMLDVSQENKRLSEPLAAAIKEVEHLRHELKDEQKDKLSLRNAKARLIQLTRQLHDLKQNQV 333
The following BLAST results are available for this feature:
BLAST of NO06G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_024571602.18.900e-1624.76sporangia induced dynein regulatory complex protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02440NO06G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02440.1NO06G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02440.1.cds1NO06G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02440.1 ID=NO06G02440.1|Name=NO06G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTCGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAGAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA
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protein sequence of NO06G02440.1

>NO06G02440.1-protein ID=NO06G02440.1-protein|Name=NO06G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MPSPGGPGKANASANTRADKTTAGKAKTSTKRGATAAGKKGSKKEDSETS
ISYASLEDFSVNQQYENMSMAGLQDAVGQLEQSTADARMSHSDAQAEQDA
FHQEHTITIQSELRVATKALTEIQKQVEDLSTDHHLELRAYRDKLIALHY
YHTLNLTSVASEREQLLGKEVEAHTSSVHMIQIKQQLGQSSSSSFGSGHR
TRTGDEGDRLQDCLTNECIHLQQSLESNLLDIEGVCTTRFAQLQKNLELR
HMKEMHGMEERADQHRQELVQQHEAVIKKLQNYYQNVVEEQSQRLQAREH
TRITAEAKANSDRIRSKKLEEAIDQLRQPLAVAILREAELKKAVKVRARD
KASLRHTRSRLRFLDAKIQEAERIQLVQRAAVEALVEEKEEEEEREIEAV
VQK*
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mRNA from alignment at chr6:692611..693822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02440.1 ID=NO06G02440.1|Name=NO06G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1212bp|location=Sequence derived from alignment at chr6:692611..693822+ (Nannochloropsis oceanica)
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTCGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAGAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA
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Coding sequence (CDS) from alignment at chr6:692611..693822+

>NO06G02440.1 ID=NO06G02440.1|Name=NO06G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr6:692611..693822+ (Nannochloropsis oceanica)
ATGCCGTCCCCCGGCGGCCCCGGCAAAGCCAATGCAAGTGCCAATACCCG
TGCAGACAAGACGACTGCAGGAAAAGCTAAGACAAGCACTAAGAGAGGAG
CTACTGCTGCTGGTAAAAAAGGCTCGAAGAAGGAAGACAGCGAGACCAGC
ATCTCTTACGCTTCTCTTGAGGATTTTTCAGTCAACCAGCAATATGAAAA
TATGTCCATGGCAGGGCTGCAAGATGCCGTGGGACAACTAGAGCAGAGTA
CGGCTGATGCCCGAATGTCTCACTCAGATGCGCAGGCCGAACAAGACGCT
TTCCACCAGGAGCATACCATCACCATTCAATCCGAGCTGCGCGTGGCCAC
AAAAGCCTTGACAGAAATTCAAAAGCAAGTTGAAGATCTAAGCACAGACC
ACCACTTGGAGCTGCGGGCTTACCGAGACAAACTGATTGCCCTCCATTAC
TACCACACCCTGAACTTGACGTCCGTGGCTTCAGAACGTGAGCAGCTCCT
TGGCAAGGAAGTCGAAGCACATACTTCAAGTGTTCATATGATCCAGATAA
AGCAACAACTCGGTCAGTCTTCCTCCTCGTCTTTTGGCAGCGGTCACCGC
ACCAGAACAGGAGACGAAGGCGATAGGCTGCAGGACTGCCTTACCAACGA
ATGCATCCACTTACAACAGTCATTGGAAAGCAATCTCTTAGACATTGAAG
GCGTCTGTACAACCCGCTTTGCACAGCTACAGAAGAATCTGGAGCTTCGG
CACATGAAGGAGATGCATGGAATGGAAGAGCGCGCGGACCAGCACCGGCA
AGAATTGGTGCAGCAACACGAAGCAGTCATAAAAAAACTGCAGAACTACT
ATCAGAACGTGGTAGAAGAGCAGAGTCAACGACTCCAGGCCCGTGAGCAC
ACGAGGATAACAGCCGAGGCCAAGGCCAACAGCGACCGGATTCGAAGCAA
GAAATTGGAGGAGGCGATTGATCAGCTGCGACAGCCCTTGGCCGTCGCCA
TCTTGCGAGAGGCAGAGCTCAAGAAGGCAGTAAAGGTCCGTGCAAGGGAC
AAAGCCTCGTTGCGGCACACCCGCAGCCGGCTACGTTTTCTTGATGCCAA
GATTCAGGAGGCGGAGCGGATACAGCTCGTGCAACGCGCGGCGGTTGAGG
CGTTGGTAGAGGAAAAGGAGGAGGAGGAGGAGCGCGAGATCGAAGCAGTA
GTGCAGAAATAA
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Synonyms
Publications