NO06G02370.1, NO06G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02370.1
Unique NameNO06G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr6:679461..680432 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:679461..680432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02370.1 vs.
Match: EWM26242.1 (hypothetical protein Naga_100025g64 [Nannochloropsis gaditana])

HSP 1 Score: 319.7 bits (818), Expect = 9.600e-84
Identity = 169/290 (58.28%), Postives = 203/290 (70.00%), Query Frame = 0 
Query:    1 MPRFNLLPP--ASLLMLLLLLGPSPISQAFPISGYFSPRQRAFLWRAQAGAECFDDDNGSLPLFRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILTPLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHPPPPAADDDEDEECGASFFLPPPPFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEVVEELEGCSVIWSVSNFKTSDEED-------------DGVSFRGVMRDGFCLVQSQRDAGIQLKIEDDLLLTREMLCVNDRGTDCVTDE 276
            +PR NLLPP  A L +LLLL  P   ++AF +       ++A  WR Q GA   +D +G L  FR +FQGEFDNA QV SERAQGIEAG  GGHEQIHC+L PL+L  G  G D+ F +GATYYFDGRP+AVFRCRVYSFHPPPP +   EDEE G+SFFLPP PF EMRLHRFTP+FE +MR+N YD+ LL +   +LA+VVEEL GCS++WSV   +    +D              G  F+G MR+GFCLV SQR+A ++LKIEDDLLLT +ML VNDRGTDC T E
Sbjct:   32 LPRHNLLPPLAAVLCLLLLLSRPDATTEAFVLH-----LRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPP-SQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGE 315
The following BLAST results are available for this feature:
BLAST of NO06G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26242.19.600e-8458.28hypothetical protein Naga_100025g64 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02370NO06G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02370.1NO06G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02370.1.cds1NO06G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02370.1.cds2NO06G02370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02370.1 ID=NO06G02370.1|Name=NO06G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
ATGCCTCGCTTCAACCTCCTGCCTCCCGCAAGTCTCCTGATGCTCCTCCT
CCTGTTGGGACCATCACCCATATCCCAAGCCTTCCCGATCAGCGGGTACT
TTTCACCAAGACAACGCGCGTTTCTATGGCGTGCTCAAGCCGGGGCGGAA
TGCTTTGACGATGATAATGGCTCTCTTCCTTTATTCCGCTTGTACTTCCA
AGGCGAGTTCGACAACGCGGCGCAGGTGGTGTCGGAGCGAGCACAAGGCA
TAGAGGCGGGACCTGCCGGTGGACATGAACAGATTCATTGCATCTTGACG
CCTCTAGATCTACCCGCAGGAAGTTTTGGTGGTGATGCGCAATTTTTCTT
GGGCGCCACCTACTATTTTGATGGCCGACCCGAGGCTGTCTTCCGCTGCC
GTGTCTACAGCTTCCACCCTCCCCCTCCGGCCGCCGACGACGATGAAGAT
GAGGAGTGCGGGGCATCATTTTTTTTACCTCCTCCGCCTTTTCTGGAAAT
GCGGCTACATCGATTCACCCCGGAATTCGAGGGTATGATGAGGCAGAATA
AATATGACTTGAATTTGTTGCCTCAGACACAGGTAGAGCTGGCAGAGGTG
GTGGAGGAATTGGAAGGTTGTAGCGTTATTTGGAGCGTCTCCAACTTTAA
GACAAGTGACGAAGAAGATGATGGGGTGAGTTTTCGAGGGGTGATGCGCG
ACGGTTTTTGTTTGGTTCAGTCGCAGAGAGATGCGGGTATTCAGTTGAAG
ATTGAGGATGATTTGCTGTTGACGAGGGAAATGTTGTGTGTGAACGACCG
CGGAACAGATTGTGTGACAGATGAAGAACAACGCGAAGAAGAAGACGAGG
AGGATAAGGAGACGGAGGATGAGGGGGGGGAGGAGTTAGAAGGATAA
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protein sequence of NO06G02370.1

>NO06G02370.1-protein ID=NO06G02370.1-protein|Name=NO06G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MPRFNLLPPASLLMLLLLLGPSPISQAFPISGYFSPRQRAFLWRAQAGAE
CFDDDNGSLPLFRLYFQGEFDNAAQVVSERAQGIEAGPAGGHEQIHCILT
PLDLPAGSFGGDAQFFLGATYYFDGRPEAVFRCRVYSFHPPPPAADDDED
EECGASFFLPPPPFLEMRLHRFTPEFEGMMRQNKYDLNLLPQTQVELAEV
VEELEGCSVIWSVSNFKTSDEEDDGVSFRGVMRDGFCLVQSQRDAGIQLK
IEDDLLLTREMLCVNDRGTDCVTDEEQREEEDEEDKETEDEGGEELEG*
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mRNA from alignment at chr6:679461..680432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02370.1 ID=NO06G02370.1|Name=NO06G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=972bp|location=Sequence derived from alignment at chr6:679461..680432+ (Nannochloropsis oceanica)
ATGCCTCGCTTCAACCTCCTGCCTCCCGCAAGTCTCCTGATGCTCCTCCT
CCTGTTGGGACCATCACCCATATCCCAAGCCTTCCCGATCAGCGGGTACT
TTTCACCAAGACAACGCGCGTTTCTATGGCGTGCTCAAGCCGGGGCGGAA
TGCTTTGACGATGATAATGGCTCTCTTCCTTTATTCCGCTTGTACTTCCA
AGGCGAGTTCGACAACGCGGCGCAGGTGGTGTCGGAGCGAGCACAAGGCA
TAGAGGCGGGACCTGCCGGTGGACATGAACAGATTCATTGCATCTTGACG
CCTCTAGATCTACCCGCAGGAAGTTTTGGTGGTGATGCGCAATTTTTCTT
GGGCGCCACCTACTATTTTGATGGCCGACCCGAGGCTGTCTTCCGCTGCC
GTGTCTACAGCTTCCACCCTCCCCCTCCGGCCGCCGACGACGATGAAGAT
GAGGAGTGCGGGGCATCATTTTTTTTACCTCCTCCGCCTTTTCTGGAAAT
GCGGCTACATCGATTCACCCCGGAATTCGAGGGTATGATGAGGCAGAATA
AATATGACTTGAATTTGTTGCCTCAGACACAGGTAGAGCTGGCAGAGGTG
GTGGAGGAATTGGAAGGTTGTAGCGTTATTTGGAGCGTCTCCAACTTTAA
GACAAGTGACGAAGAAGATGATGGGGTGAGTTTTCGAGGGGTGATGCGCG
ACGGTTTTTGTTTGGTTCAGTCGCAGAGAGATGCGGGTATTCAGTTGAAG
ATTGAGGATGATTTGCTGTTGACGAGGGAAATGTTGTGTGTGAACGACCG
CGGAACAGATTGTGTGACAGGTAAGATCATATATGGTAATTATAGAAGCT
TGCCTTACAGAATGGAGCGACGACAACGACCGTAGGATGGTACAGATGAA
GAACAACGCGAAGAAGAAGACGAGGAGGATAAGGAGACGGAGGATGAGGG
GGGGGAGGAGTTAGAAGGATAA
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Coding sequence (CDS) from alignment at chr6:679461..680432+

>NO06G02370.1 ID=NO06G02370.1|Name=NO06G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr6:679461..680432+ (Nannochloropsis oceanica)
ATGCCTCGCTTCAACCTCCTGCCTCCCGCAAGTCTCCTGATGCTCCTCCT
CCTGTTGGGACCATCACCCATATCCCAAGCCTTCCCGATCAGCGGGTACT
TTTCACCAAGACAACGCGCGTTTCTATGGCGTGCTCAAGCCGGGGCGGAA
TGCTTTGACGATGATAATGGCTCTCTTCCTTTATTCCGCTTGTACTTCCA
AGGCGAGTTCGACAACGCGGCGCAGGTGGTGTCGGAGCGAGCACAAGGCA
TAGAGGCGGGACCTGCCGGTGGACATGAACAGATTCATTGCATCTTGACG
CCTCTAGATCTACCCGCAGGAAGTTTTGGTGGTGATGCGCAATTTTTCTT
GGGCGCCACCTACTATTTTGATGGCCGACCCGAGGCTGTCTTCCGCTGCC
GTGTCTACAGCTTCCACCCTCCCCCTCCGGCCGCCGACGACGATGAAGAT
GAGGAGTGCGGGGCATCATTTTTTTTACCTCCTCCGCCTTTTCTGGAAAT
GCGGCTACATCGATTCACCCCGGAATTCGAGGGTATGATGAGGCAGAATA
AATATGACTTGAATTTGTTGCCTCAGACACAGGTAGAGCTGGCAGAGGTG
GTGGAGGAATTGGAAGGTTGTAGCGTTATTTGGAGCGTCTCCAACTTTAA
GACAAGTGACGAAGAAGATGATGGGGTGAGTTTTCGAGGGGTGATGCGCG
ACGGTTTTTGTTTGGTTCAGTCGCAGAGAGATGCGGGTATTCAGTTGAAG
ATTGAGGATGATTTGCTGTTGACGAGGGAAATGTTGTGTGTGAACGACCG
CGGAACAGATTGTGTGACAGATGAAGAACAACGCGAAGAAGAAGACGAGG
AGGATAAGGAGACGGAGGATGAGGGGGGGGAGGAGTTAGAAGGATAA
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Synonyms
Publications