NO06G02350.1, NO06G02350.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02350.1
Unique NameNO06G02350.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length958
Alignment locationchr6:677059..678327 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:677059..678327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02350.1 vs.
Match: EWM26226.1 (vesicle transport protein sft2a [Nannochloropsis gaditana])

HSP 1 Score: 315.1 bits (806), Expect = 1.400e-82
Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0 
Query:    1 MKAIQSMLPGAQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRYSAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGTIAGMV 172
            MKAIQ+MLPGAQEE+V+EEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMT DGIRNFAALYVVGNIIALCSTGFL+GPK+QCKKMFDKTRRYS ILYIIMLI VFAVALA QNVFLVLFLLIIQVL AVWYTLSYVPFGRQAVVGCMQNTLFKPCPG IAGMV
Sbjct:   16 MKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMV 186
The following BLAST results are available for this feature:
BLAST of NO06G02350.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26226.11.400e-8293.57vesicle transport protein sft2a [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02350NO06G02350Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02350.1NO06G02350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02350.1.cds1NO06G02350.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02350.1.cds2NO06G02350.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02350.1 ID=NO06G02350.1|Name=NO06G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=958bp
AGTTCAATCAACATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGA
AGAGACGGTATCAGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACC
AACAGCGCATGATTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTC
TCCTTCATCGGCACCCTCTCCCTCATCTCCATGACCACGGACGGCATTCG
GAACTTTGCCGCGCTCTACGTCGTGGGGAACATCATTGCCTTATGCTCCA
CCGGTTTCTTGATTGGACCCAAGAATCAGTGCAAGAAGATGTTTGATAAA
ACCCGGCGGTATTCCGCCATCCTTTATATCATCATGTTAATCACCGTTTT
CGCGGTAGCCCTGGCAGGTCAGAACGTTTTCCTGGTCCTGTTTCTGTTGA
TCATTCAGGTGTTATGTGCGGTGTGGTACACGCTGTCGTACGTACCATTT
GGGAGGCAGGCGGTGGTTGGGTGCATGCAGAACACGTTGTTCAAGCCGTG
CCCAGGGACGATTGCGGGGATGGTCTAAATGGAGGGCTAGGAGGGAGGGT
TTGAAGGGAGGGACGGAAAGAGGGAAGACAAAAGAATTCAAAAACTGCAG
TGTTTTTATATTGTAATTTTATCTTCACTCTCTCCTGTCATGAGGGAGTC
CAGCCGTCCTCGAGATGGCAGTGAGGAATGATGGCACCAGACCAATTCTC
AATACACCACTGAGAGAGATTGAAGAAAGAAAAGAAAAAGAGAAGAGAAG
TGTTTTATTCATTCATCAAAGACATCGAAGATGATGGAGACGACGAGGAA
AGAAAAAGAGGAAGTGGTAGCGTGGGTGTGTGAATCAAAAGGGCAGAAAA
CATATGGAGAGGCTGGGCAAAGCGCGCGACAAAGCAAGAGCGAGAAACAT
CGAAAGCCGTCAACTTGAGCTTTCAAAAGCTAGTTATAGCAGCACCGCAT
CATCGTGG
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protein sequence of NO06G02350.1

>NO06G02350.1-protein ID=NO06G02350.1-protein|Name=NO06G02350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MKAIQSMLPGAQEETVSEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIG
TLSLISMTTDGIRNFAALYVVGNIIALCSTGFLIGPKNQCKKMFDKTRRY
SAILYIIMLITVFAVALAGQNVFLVLFLLIIQVLCAVWYTLSYVPFGRQA
VVGCMQNTLFKPCPGTIAGMV*
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mRNA from alignment at chr6:677059..678327+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02350.1 ID=NO06G02350.1|Name=NO06G02350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp|location=Sequence derived from alignment at chr6:677059..678327+ (Nannochloropsis oceanica)
AGTTCAATCAACATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGA
AGAGACGGTATCAGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACC
AACAGCGCATGATTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTC
TCCTTCATCGTAAGTAGTGGATAGTCCCACGCACCTTTCACTGTGGTGCT
TGATTGCGTGTTCTTTTTTGTGGTTGTGTCCTGTATATCTTGCGCGCGAA
TGTTTTCCCACTGCCCCTCTGAATTGATCTCTGGGTCGTGCCATCCCGCT
CGTCCCCCCCACCCTTTGCTTCCTACCCTAACATGCCGGTTTCTGCCTAC
TTTCCTCGAAGCTGATAGCGCAGCTAGTCTGTCGATCTTTCCCTTCTGTT
TGACTTGCTGCCATTCCTTTGTCTCATCATCCTCCCTCCCCCGCTCCCCT
CCTCCTTCCCTATCTACCAGGGCACCCTCTCCCTCATCTCCATGACCACG
GACGGCATTCGGAACTTTGCCGCGCTCTACGTCGTGGGGAACATCATTGC
CTTATGCTCCACCGGTTTCTTGATTGGACCCAAGAATCAGTGCAAGAAGA
TGTTTGATAAAACCCGGCGGTATTCCGCCATCCTTTATATCATCATGTTA
ATCACCGTTTTCGCGGTAGCCCTGGCAGGTCAGAACGTTTTCCTGGTCCT
GTTTCTGTTGATCATTCAGGTGTTATGTGCGGTGTGGTACACGCTGTCGT
ACGTACCATTTGGGAGGCAGGCGGTGGTTGGGTGCATGCAGAACACGTTG
TTCAAGCCGTGCCCAGGGACGATTGCGGGGATGGTCTAAATGGAGGGCTA
GGAGGGAGGGTTTGAAGGGAGGGACGGAAAGAGGGAAGACAAAAGAATTC
AAAAACTGCAGTGTTTTTATATTGTAATTTTATCTTCACTCTCTCCTGTC
ATGAGGGAGTCCAGCCGTCCTCGAGATGGCAGTGAGGAATGATGGCACCA
GACCAATTCTCAATACACCACTGAGAGAGATTGAAGAAAGAAAAGAAAAA
GAGAAGAGAAGTGTTTTATTCATTCATCAAAGACATCGAAGATGATGGAG
ACGACGAGGAAAGAAAAAGAGGAAGTGGTAGCGTGGGTGTGTGAATCAAA
AGGGCAGAAAACATATGGAGAGGCTGGGCAAAGCGCGCGACAAAGCAAGA
GCGAGAAACATCGAAAGCCGTCAACTTGAGCTTTCAAAAGCTAGTTATAG
CAGCACCGCATCATCGTGG
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Coding sequence (CDS) from alignment at chr6:677059..678327+

>NO06G02350.1 ID=NO06G02350.1|Name=NO06G02350.1|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at chr6:677059..678327+ (Nannochloropsis oceanica)
ATGAAGGCCATTCAAAGTATGTTGCCGGGCGCCCAGGAAGAGACGGTATC
AGAGGAAGTGTGTGCCATGTGCCCATCCCTGACGTACCAACAGCGCATGA
TTGGTTTCGTCGGCTGCTTTTGCCTGGGCTACCTGCTCTCCTTCATCGGC
ACCCTCTCCCTCATCTCCATGACCACGGACGGCATTCGGAACTTTGCCGC
GCTCTACGTCGTGGGGAACATCATTGCCTTATGCTCCACCGGTTTCTTGA
TTGGACCCAAGAATCAGTGCAAGAAGATGTTTGATAAAACCCGGCGGTAT
TCCGCCATCCTTTATATCATCATGTTAATCACCGTTTTCGCGGTAGCCCT
GGCAGGTCAGAACGTTTTCCTGGTCCTGTTTCTGTTGATCATTCAGGTGT
TATGTGCGGTGTGGTACACGCTGTCGTACGTACCATTTGGGAGGCAGGCG
GTGGTTGGGTGCATGCAGAACACGTTGTTCAAGCCGTGCCCAGGGACGAT
TGCGGGGATGGTCTAA
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Synonyms
Publications