NO06G02340.1, NO06G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02340.1
Unique NameNO06G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr6:674811..676505 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:674811..676505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02340.1 vs.
Match: EWM26203.1 (rna polymerase sigma factor [Nannochloropsis gaditana])

HSP 1 Score: 451.1 bits (1159), Expect = 4.600e-123
Identity = 264/466 (56.65%), Postives = 328/466 (70.39%), Query Frame = 0 
Query:   42 GTTQRPSARRRHGLAVLMVLTSMGLTQTQAFLMPPPGVAARRAGTN-KPESTTTTLRASSSISARMEAPFPVIKESSTTISSSARRARRRQSSASTAATVPPPSSSISSQQQLSRRQTSSQQQDNSELLRRQQVRKQSEPGTTQADALMHGRVRAVQRAAVAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVKGWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKTYVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVMSKEEIAAKVGLPVARVEELGRKGQRYGLI-GASGREG------VMAVDTAQEQ---GGGQGGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVRTMEGCSLSYLRKVESKAKIMLRRNVDVVKLIHRRPASFDEVLFAGG 497
            G  QR +    H LA ++ + S+G+TQT+AFLMPPPGVA R+AGT   P +    + A  SI A +    P I    +T  S+ RR RRR +SA       PPSSS S       RQ        +E++        S    T+ D LM GR+ AVQRAAVAIQK R+L+K LGRAP+ +EW +ALGGVTEE L  +L QGTVA+A LVKGW+GLV  FVGK+A  LSDSELQDLVVEGQ+GVVEAA+RF+GGQGA FKTY +YWVRKRVMDAA MYDRSTF G HE RQAS I K V++HE+E+GG ++S  EIA KVG+P A+VE+L R+G+RYGL+  +SG++G      +   DT Q+    GG Q  VL+SMY++EVEEA+R A+A LP+EERTVL+ RLGLEDG PK WEE+ + M+GCS+SY+RKVE+KAK  LRRNVDVV+L+HRRPASFDE   A G
Sbjct:    4 GRIQRKTVTHHHLLAAILAIASVGMTQTRAFLMPPPGVAVRKAGTRTSPNTYAAVMDAPVSIGALVGTQSPRI----STQKSTGRRGRRRPTSA-------PPSSSASHPTNDHPRQ--------NEVIHAPD----SHASPTEHDILMQGRINAVQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRRNVDVVRLVHRRPASFDETFVAAG 446
The following BLAST results are available for this feature:
BLAST of NO06G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26203.14.600e-12356.65rna polymerase sigma factor [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02340NO06G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02340.1NO06G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02340.1.cds1NO06G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02340.1.cds2NO06G02340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02340.1 ID=NO06G02340.1|Name=NO06G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp
ATGTCGTTCCAGCCCCACGTCACACATGGTCACAAGGATCGAGATCAGGA
TCGCCACCTCAGAAGTAATCAGTACCTCGACAACGAAAAAGCAATGATCT
CCAAGGTCATAACCACTAGCGGCGGCACAACGCAAAGACCGTCAGCACGA
AGACGCCACGGTTTGGCAGTGCTGATGGTCCTCACAAGCATGGGACTGAC
GCAAACACAAGCATTTCTCATGCCACCGCCAGGCGTGGCCGCCCGACGCG
CCGGAACAAACAAGCCCGAGTCCACCACCACGACCCTGCGAGCCTCCTCC
TCCATCTCAGCCCGCATGGAGGCACCCTTCCCTGTTATCAAAGAAAGCAG
CACCACCATCAGTAGCTCTGCCCGCCGGGCTCGACGAAGGCAAAGCTCTG
CTTCGACCGCCGCAACTGTCCCACCTCCGTCCTCCTCCATAAGCAGTCAA
CAACAACTTTCACGAAGACAAACGTCAAGTCAACAACAAGACAATTCAGA
ACTACTACGACGACAACAGGTTCGGAAACAGTCCGAACCCGGTACTACCC
AAGCCGACGCCCTCATGCATGGCCGCGTCAGGGCCGTTCAACGAGCTGCC
GTCGCCATCCAAAAACATCGAGCACTGGCTAAGGAGCTCGGACGGGCACC
CTCCCCCTCCGAATGGGGTGAAGCTCTCGGAGGAGTTACAGAAGAGAGCT
TGAGAGTTGTCTTGGAGCAAGGAACAGTAGCGAGGGCAGCCTTAGTGAAA
GGGTGGGACGGTTTAGTAGCAAAGTTTGTTGGCAAATTCGCGATGAGACT
CTCGGATTCGGAGCTGCAGGACTTGGTGGTTGAGGGACAGCTGGGCGTGG
TGGAGGCAGCAGTACGATTTGAGGGGGGGCAAGGGGCAGGGTTTAAGACG
TATGTGTATTACTGGGTGAGGAAGAGGGTGATGGACGCGGCGGCGATGTA
TGATAGGTCAACTTTTACCGGGTTGCATGAGCAGAGGCAGGCGTCACACA
TTTGGAAGGTGGTGGAGGCACACGAGAAGGAAAGTGGGGGAAACGTGATG
AGCAAGGAGGAGATTGCGGCAAAGGTGGGCTTGCCTGTCGCGAGGGTGGA
AGAGTTGGGTCGGAAGGGACAGCGATATGGATTGATCGGAGCGTCAGGGA
GAGAGGGAGTGATGGCGGTGGATACGGCGCAGGAGCAAGGGGGGGGGCAG
GGAGGGGTGTTGGAGAGCATGTACCTGGCTGAAGTTGAGGAGGCGATCAG
GGGGGCGCTGGCAGCATTGCCACGAGAGGAGAGGACGGTGTTGAGTTTAA
GGTTGGGATTAGAGGATGGCCAGCCGAAGGGATGGGAGGAGATTGTGAGG
ACGATGGAGGGATGCAGTTTGAGTTACTTGAGGAAAGTAGAATCGAAGGC
AAAGATCATGCTGAGGAGGAACGTGGACGTGGTGAAGCTAATTCATCGAA
GGCCGGCGTCGTTTGATGAGGTGCTTTTCGCGGGGGGGGAGTAA
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protein sequence of NO06G02340.1

>NO06G02340.1-protein ID=NO06G02340.1-protein|Name=NO06G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MSFQPHVTHGHKDRDQDRHLRSNQYLDNEKAMISKVITTSGGTTQRPSAR
RRHGLAVLMVLTSMGLTQTQAFLMPPPGVAARRAGTNKPESTTTTLRASS
SISARMEAPFPVIKESSTTISSSARRARRRQSSASTAATVPPPSSSISSQ
QQLSRRQTSSQQQDNSELLRRQQVRKQSEPGTTQADALMHGRVRAVQRAA
VAIQKHRALAKELGRAPSPSEWGEALGGVTEESLRVVLEQGTVARAALVK
GWDGLVAKFVGKFAMRLSDSELQDLVVEGQLGVVEAAVRFEGGQGAGFKT
YVYYWVRKRVMDAAAMYDRSTFTGLHEQRQASHIWKVVEAHEKESGGNVM
SKEEIAAKVGLPVARVEELGRKGQRYGLIGASGREGVMAVDTAQEQGGGQ
GGVLESMYLAEVEEAIRGALAALPREERTVLSLRLGLEDGQPKGWEEIVR
TMEGCSLSYLRKVESKAKIMLRRNVDVVKLIHRRPASFDEVLFAGGE*
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mRNA from alignment at chr6:674811..676505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02340.1 ID=NO06G02340.1|Name=NO06G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp|location=Sequence derived from alignment at chr6:674811..676505- (Nannochloropsis oceanica)
ATGTCGTTCCAGCCCCACGTCACACATGGTGCGCAGACGCTGTCCAAGCC
CTCGCTTTTCGAGAACATGAATTGATTGATGACTCCGTTATTGCCCTGGG
CGCATTTTCGTATCACGCTCTATTGTCTACACCTTGTACACAAGCAGGGA
CAGACTATCACGGCTCATTAGCCACATTCCTGCTGTCCAACTACTCACTT
ATACTCCTCTTCCAACTCAATCTTCATAGGTCACAAGGATCGAGATCAGG
ATCGCCACCTCAGAAGTAATCAGTACCTCGACAACGAAAAAGCAATGATC
TCCAAGGTCATAACCACTAGCGGCGGCACAACGCAAAGACCGTCAGCACG
AAGACGCCACGGTTTGGCAGTGCTGATGGTCCTCACAAGCATGGGACTGA
CGCAAACACAAGCATTTCTCATGCCACCGCCAGGCGTGGCCGCCCGACGC
GCCGGAACAAACAAGCCCGAGTCCACCACCACGACCCTGCGAGCCTCCTC
CTCCATCTCAGCCCGCATGGAGGCACCCTTCCCTGTTATCAAAGAAAGCA
GCACCACCATCAGTAGCTCTGCCCGCCGGGCTCGACGAAGGCAAAGCTCT
GCTTCGACCGCCGCAACTGTCCCACCTCCGTCCTCCTCCATAAGCAGTCA
ACAACAACTTTCACGAAGACAAACGTCAAGTCAACAACAAGACAATTCAG
AACTACTACGACGACAACAGGTTCGGAAACAGTCCGAACCCGGTACTACC
CAAGCCGACGCCCTCATGCATGGCCGCGTCAGGGCCGTTCAACGAGCTGC
CGTCGCCATCCAAAAACATCGAGCACTGGCTAAGGAGCTCGGACGGGCAC
CCTCCCCCTCCGAATGGGGTGAAGCTCTCGGAGGAGTTACAGAAGAGAGC
TTGAGAGTTGTCTTGGAGCAAGGAACAGTAGCGAGGGCAGCCTTAGTGAA
AGGGTGGGACGGTTTAGTAGCAAAGTTTGTTGGCAAATTCGCGATGAGAC
TCTCGGATTCGGAGCTGCAGGACTTGGTGGTTGAGGGACAGCTGGGCGTG
GTGGAGGCAGCAGTACGATTTGAGGGGGGGCAAGGGGCAGGGTTTAAGAC
GTATGTGTATTACTGGGTGAGGAAGAGGGTGATGGACGCGGCGGCGATGT
ATGATAGGTCAACTTTTACCGGGTTGCATGAGCAGAGGCAGGCGTCACAC
ATTTGGAAGGTGGTGGAGGCACACGAGAAGGAAAGTGGGGGAAACGTGAT
GAGCAAGGAGGAGATTGCGGCAAAGGTGGGCTTGCCTGTCGCGAGGGTGG
AAGAGTTGGGTCGGAAGGGACAGCGATATGGATTGATCGGAGCGTCAGGG
AGAGAGGGAGTGATGGCGGTGGATACGGCGCAGGAGCAAGGGGGGGGGCA
GGGAGGGGTGTTGGAGAGCATGTACCTGGCTGAAGTTGAGGAGGCGATCA
GGGGGGCGCTGGCAGCATTGCCACGAGAGGAGAGGACGGTGTTGAGTTTA
AGGTTGGGATTAGAGGATGGCCAGCCGAAGGGATGGGAGGAGATTGTGAG
GACGATGGAGGGATGCAGTTTGAGTTACTTGAGGAAAGTAGAATCGAAGG
CAAAGATCATGCTGAGGAGGAACGTGGACGTGGTGAAGCTAATTCATCGA
AGGCCGGCGTCGTTTGATGAGGTGCTTTTCGCGGGGGGGGAGTAA
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Coding sequence (CDS) from alignment at chr6:674811..676505-

>NO06G02340.1 ID=NO06G02340.1|Name=NO06G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr6:674811..676505- (Nannochloropsis oceanica)
ATGTCGTTCCAGCCCCACGTCACACATGGTCACAAGGATCGAGATCAGGA
TCGCCACCTCAGAAGTAATCAGTACCTCGACAACGAAAAAGCAATGATCT
CCAAGGTCATAACCACTAGCGGCGGCACAACGCAAAGACCGTCAGCACGA
AGACGCCACGGTTTGGCAGTGCTGATGGTCCTCACAAGCATGGGACTGAC
GCAAACACAAGCATTTCTCATGCCACCGCCAGGCGTGGCCGCCCGACGCG
CCGGAACAAACAAGCCCGAGTCCACCACCACGACCCTGCGAGCCTCCTCC
TCCATCTCAGCCCGCATGGAGGCACCCTTCCCTGTTATCAAAGAAAGCAG
CACCACCATCAGTAGCTCTGCCCGCCGGGCTCGACGAAGGCAAAGCTCTG
CTTCGACCGCCGCAACTGTCCCACCTCCGTCCTCCTCCATAAGCAGTCAA
CAACAACTTTCACGAAGACAAACGTCAAGTCAACAACAAGACAATTCAGA
ACTACTACGACGACAACAGGTTCGGAAACAGTCCGAACCCGGTACTACCC
AAGCCGACGCCCTCATGCATGGCCGCGTCAGGGCCGTTCAACGAGCTGCC
GTCGCCATCCAAAAACATCGAGCACTGGCTAAGGAGCTCGGACGGGCACC
CTCCCCCTCCGAATGGGGTGAAGCTCTCGGAGGAGTTACAGAAGAGAGCT
TGAGAGTTGTCTTGGAGCAAGGAACAGTAGCGAGGGCAGCCTTAGTGAAA
GGGTGGGACGGTTTAGTAGCAAAGTTTGTTGGCAAATTCGCGATGAGACT
CTCGGATTCGGAGCTGCAGGACTTGGTGGTTGAGGGACAGCTGGGCGTGG
TGGAGGCAGCAGTACGATTTGAGGGGGGGCAAGGGGCAGGGTTTAAGACG
TATGTGTATTACTGGGTGAGGAAGAGGGTGATGGACGCGGCGGCGATGTA
TGATAGGTCAACTTTTACCGGGTTGCATGAGCAGAGGCAGGCGTCACACA
TTTGGAAGGTGGTGGAGGCACACGAGAAGGAAAGTGGGGGAAACGTGATG
AGCAAGGAGGAGATTGCGGCAAAGGTGGGCTTGCCTGTCGCGAGGGTGGA
AGAGTTGGGTCGGAAGGGACAGCGATATGGATTGATCGGAGCGTCAGGGA
GAGAGGGAGTGATGGCGGTGGATACGGCGCAGGAGCAAGGGGGGGGGCAG
GGAGGGGTGTTGGAGAGCATGTACCTGGCTGAAGTTGAGGAGGCGATCAG
GGGGGCGCTGGCAGCATTGCCACGAGAGGAGAGGACGGTGTTGAGTTTAA
GGTTGGGATTAGAGGATGGCCAGCCGAAGGGATGGGAGGAGATTGTGAGG
ACGATGGAGGGATGCAGTTTGAGTTACTTGAGGAAAGTAGAATCGAAGGC
AAAGATCATGCTGAGGAGGAACGTGGACGTGGTGAAGCTAATTCATCGAA
GGCCGGCGTCGTTTGATGAGGTGCTTTTCGCGGGGGGGGAGTAA
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Synonyms
Publications