NO06G02250.1, NO06G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02250.1
Unique NameNO06G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1377
Alignment locationchr6:654905..656633 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:654905..656633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G02250.1 vs.
Match: EWM26243.1 (Heat shock protein Hsp33 [Nannochloropsis gaditana])

HSP 1 Score: 623.2 bits (1606), Expect = 5.900e-175
Identity = 325/414 (78.50%), Postives = 353/414 (85.27%), Query Frame = 0 
Query:   24 CCLLLFPTMLSALITTTSRLRPNLSGRRALTTTTSMRAGIGGGYNNQSYQYRRNVQRPTPRGPAFRRFMTSPPTHANAG---SDDFVPIEPATLNWEKVGPDQDVFISALSQNGHVNVKVISAKNMVQAIKEKRELSGVATELLGRVMLSTMLVANGIKDEETLQLTFNGDGQAKGVMAISDGACNVRAWIGNSDLDDLRDPETLKADIKSAVGKGTLQVVKNHPSWRIPYNGVVEIASGEVAPDVAFYLASSEQRNTALGVGLQVDPLSGNVASAGGFYVEMMPGVEEESVLKVEVNLAVIKERFGSVDAGHLFALKEPITPYKLVKMLLDGLGVSMASESLPTYRCTCSAEKVFRALSLLGEEEVEDILAKEGVIDAKCEFCAERYELTREQLIELREQALAAAAAGEPWPA 435
            C  L F +M SA I  TSRLR +   R    T       +  G +  S  Y RN  RPT RGP+FR F TS P HANAG   +DDFVPI PATLNWEK+GPDQDVFISALSQNGHVNVKVISAKNMVQAI+EKRELS V+TELLGRVMLS MLVANGIKDEETLQLTF+GDG AKGVMAISDGACNVRAWIGNSDLDDL+DPET +ADIK+AVGKGTLQVVKNHPSWRIPYNGVV+IASGEVAPDVAFYLASSEQRNTALGVGL +DP +G V SAGGFY+EMMPGVEEESVLKVEVNLAV+KERFGSVD G LFA K+P+TPYKLVKMLLDGLGV MA E+ P YRCTCSAEKVFRA+SLLGEEEVE ILA+EG+I AKCEFCAE+YEL+REQL+ LRE+ALAAA AGEPWPA
Sbjct:   22 CSFLPFLSMASAFIPLTSRLRNSPLVRVCRRTMHPPTFSMREGMSFNSPPYTRNNNRPTSRGPSFRLFKTSAPLHANAGGTNNDDFVPISPATLNWEKIGPDQDVFISALSQNGHVNVKVISAKNMVQAIREKRELSAVSTELLGRVMLSAMLVANGIKDEETLQLTFSGDGAAKGVMAISDGACNVRAWIGNSDLDDLKDPETGRADIKAAVGKGTLQVVKNHPSWRIPYNGVVQIASGEVAPDVAFYLASSEQRNTALGVGLSLDPKTGEVESAGGFYIEMMPGVEEESVLKVEVNLAVLKERFGSVDPGVLFAGKQPVTPYKLVKMLLDGLGVGMAEETQPAYRCTCSAEKVFRAVSLLGEEEVESILAQEGMIAAKCEFCAEKYELSREQLVALREEALAAAEAGEPWPA 435
The following BLAST results are available for this feature:
BLAST of NO06G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26243.15.900e-17578.50Heat shock protein Hsp33 [Nannochloropsis gaditana... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02250NO06G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02250.1NO06G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02250.1.cds1NO06G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02250.1.cds2NO06G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02250.1 ID=NO06G02250.1|Name=NO06G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp
AACACAAGCACAGAGATGAAGGACACGAGATCCCTTACCTTCTTTTTCGC
TCCCTTCCGTTGGTATTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCT
TCCCGACCATGCTTTCCGCCTTGATCACCACGACCTCCCGCCTCCGGCCC
AACTTGAGCGGCCGCCGCGCGTTGACTACGACCACCAGCATGCGCGCTGG
AATTGGTGGAGGCTATAACAATCAGTCGTACCAGTACCGTCGCAATGTGC
AGCGGCCTACGCCTCGGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCC
CCCACTCATGCCAATGCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGC
GACTCTGAATTGGGAAAAGGTTGGCCCGGACCAAGATGTATTTATAAGTG
CCTTGTCGCAAAATGGCCATGTAAATGTGAAGGTTATCTCGGCTAAGAAC
ATGGTGCAGGCCATAAAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGA
GCTCCTTGGGCGAGTCATGCTTAGCACGATGCTGGTGGCCAACGGCATCA
AGGACGAAGAGACCTTGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAG
GGAGTCATGGCCATTTCGGACGGAGCATGCAACGTCCGTGCGTGGATTGG
TAATAGCGACTTGGATGATTTACGGGACCCCGAAACACTTAAAGCGGACA
TTAAATCCGCAGTCGGGAAAGGCACCTTACAAGTTGTCAAGAACCATCCA
TCCTGGCGTATTCCTTATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGT
GGCCCCGGATGTGGCGTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGG
CGTTAGGTGTCGGGTTGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCC
GCCGGTGGGTTTTATGTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGT
GCTGAAGGTGGAAGTGAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCG
TGGATGCGGGGCATTTGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAG
CTGGTGAAGATGCTCTTAGATGGCCTCGGCGTCAGCATGGCTTCCGAAAG
CCTGCCAACCTACCGCTGCACCTGCTCGGCAGAAAAGGTCTTTCGTGCCT
TGAGCCTACTGGGGGAGGAGGAGGTTGAGGACATCCTGGCAAAAGAGGGG
GTTATTGACGCGAAATGTGAGTTCTGTGCCGAGAGGTATGAGTTGACTAG
GGAGCAGTTGATTGAGCTTAGAGAGCAGGCGCTGGCGGCGGCGGCGGCGG
GGGAGCCCTGGCCGGCGACCCGGTGAGAGAGAGAGAGGAGAAGCACAGGA
GCAAAATGGCTAAGAATTATAATATTA
back to top

protein sequence of NO06G02250.1

>NO06G02250.1-protein ID=NO06G02250.1-protein|Name=NO06G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MKDTRSLTFFFAPFRWYSLSLCCCCLLLFPTMLSALITTTSRLRPNLSGR
RALTTTTSMRAGIGGGYNNQSYQYRRNVQRPTPRGPAFRRFMTSPPTHAN
AGSDDFVPIEPATLNWEKVGPDQDVFISALSQNGHVNVKVISAKNMVQAI
KEKRELSGVATELLGRVMLSTMLVANGIKDEETLQLTFNGDGQAKGVMAI
SDGACNVRAWIGNSDLDDLRDPETLKADIKSAVGKGTLQVVKNHPSWRIP
YNGVVEIASGEVAPDVAFYLASSEQRNTALGVGLQVDPLSGNVASAGGFY
VEMMPGVEEESVLKVEVNLAVIKERFGSVDAGHLFALKEPITPYKLVKML
LDGLGVSMASESLPTYRCTCSAEKVFRALSLLGEEEVEDILAKEGVIDAK
CEFCAERYELTREQLIELREQALAAAAAGEPWPATR*
back to top

mRNA from alignment at chr6:654905..656633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02250.1 ID=NO06G02250.1|Name=NO06G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1729bp|location=Sequence derived from alignment at chr6:654905..656633- (Nannochloropsis oceanica)
AACACAAGCACAGAGATGAAGGACACGAGATCCCTTACCTTCTTTTTCGC
TCCCTTCCGTTGGTATTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCT
TCCCGACCATGCTTTCCGCCTTGATCACCACGACCTCCCGCCTCCGGCCC
AACTTGAGCGGCCGCCGCGCGTTGACTACGACCACCAGCATGCGCGCTGG
AATTGGTGGAGGCTATAACAATCAGTCGTACCAGTACCGTCGCAATGTGC
AGCGGCCTACGCCTCGGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCC
CCCACTCATGCCAATGCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGC
GACTCTGAATTGGGAAAAGGTTGGCCCGGACCAAGATGTATTTATAAGTG
CCTTGTCGCAAAATGGCCATGTAAATGTGAAGGTTATCTCGGCTAAGAAC
ATGGTGCAGGCCATAAAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGA
GCTCCTTGGGCGAGTCATGCTTAGCACGATGCTGGTGGCCAACGGCATCA
AGGACGAAGAGACCTTGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAG
GGAGTCATGGCCATTTCGGACGGAGCATGCAACGTCCGTGCGTGGATTGG
TAATAGCGACTTGGATGATTTACGGGACCCCGAAACACTTAAAGCGGACA
TTAAATCCGCAGTCGGGAAAGGCACCTTACAAGTTGTCAAGAACCATCCA
TCCTGGCGTATTCCTTATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGT
GGCCCCGGATGTGGCGTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGG
CGTTAGGTGTCGGGTTGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCC
GCCGGTGGGTTTTATGTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGT
GCTGAAGGTGGAAGTGAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCG
TGGATGCGGGGCATTTGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAG
CTGGTGAAGATGCTCTTAGATGGTAAATGGGGAAAAGGGGGAGGGAGAGA
AGGGAGGGAAGAAGGAGAGAGAGACGTAGGGCGTGCGCGGAAGGTAGGTT
GTCAACGTTGAGGGAACCGGTGGCGCTGTGTGTGACGGTCAGGACGGTGT
TGGACTAAACGGGGGGAGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGACA
GAAGGGAGGGAGGAATGGGTGGTTTGGACGTGTAGATATAAGTGTAACGT
GTGACTGGTTTGTAGTAGGTTGACAGGCGGCTCCACATTTTGTGTCCCAA
CACTTACGTTGTCTCTGTAGATTCACTTACCCATCGTCCTCTCCCCTCCG
ACCCTCCATCCCTCCCTCCCCCAGGCCTCGGCGTCAGCATGGCTTCCGAA
AGCCTGCCAACCTACCGCTGCACCTGCTCGGCAGAAAAGGTCTTTCGTGC
CTTGAGCCTACTGGGGGAGGAGGAGGTTGAGGACATCCTGGCAAAAGAGG
GGGTTATTGACGCGAAATGTGAGTTCTGTGCCGAGAGGTATGAGTTGACT
AGGGAGCAGTTGATTGAGCTTAGAGAGCAGGCGCTGGCGGCGGCGGCGGC
GGGGGAGCCCTGGCCGGCGACCCGGTGAGAGAGAGAGAGGAGAAGCACAG
GAGCAAAATGGCTAAGAATTATAATATTA
back to top

Coding sequence (CDS) from alignment at chr6:654905..656633-

>NO06G02250.1 ID=NO06G02250.1|Name=NO06G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr6:654905..656633- (Nannochloropsis oceanica)
ATGAAGGACACGAGATCCCTTACCTTCTTTTTCGCTCCCTTCCGTTGGTA
TTCCCTATCTTTGTGTTGTTGTTGCCTGTTGCTCTTCCCGACCATGCTTT
CCGCCTTGATCACCACGACCTCCCGCCTCCGGCCCAACTTGAGCGGCCGC
CGCGCGTTGACTACGACCACCAGCATGCGCGCTGGAATTGGTGGAGGCTA
TAACAATCAGTCGTACCAGTACCGTCGCAATGTGCAGCGGCCTACGCCTC
GGGGCCCGGCCTTCCGGCGCTTCATGACCAGTCCCCCCACTCATGCCAAT
GCCGGCAGCGATGACTTCGTGCCCATCGAGCCTGCGACTCTGAATTGGGA
AAAGGTTGGCCCGGACCAAGATGTATTTATAAGTGCCTTGTCGCAAAATG
GCCATGTAAATGTGAAGGTTATCTCGGCTAAGAACATGGTGCAGGCCATA
AAGGAAAAGAGGGAGTTGTCAGGAGTCGCCACGGAGCTCCTTGGGCGAGT
CATGCTTAGCACGATGCTGGTGGCCAACGGCATCAAGGACGAAGAGACCT
TGCAGCTCACTTTCAACGGTGATGGGCAAGCCAAGGGAGTCATGGCCATT
TCGGACGGAGCATGCAACGTCCGTGCGTGGATTGGTAATAGCGACTTGGA
TGATTTACGGGACCCCGAAACACTTAAAGCGGACATTAAATCCGCAGTCG
GGAAAGGCACCTTACAAGTTGTCAAGAACCATCCATCCTGGCGTATTCCT
TATAATGGGGTGGTGGAGATTGCCTCAGGGGAGGTGGCCCCGGATGTGGC
GTTCTACCTGGCGTCTTCCGAGCAGCGCAATACGGCGTTAGGTGTCGGGT
TGCAGGTGGATCCATTGAGCGGGAACGTCGCTTCCGCCGGTGGGTTTTAT
GTGGAAATGATGCCTGGGGTGGAGGAGGAGAGTGTGCTGAAGGTGGAAGT
GAATCTAGCGGTGATCAAGGAGCGGTTTGGGAGCGTGGATGCGGGGCATT
TGTTTGCGCTAAAGGAGCCGATAACGCCTTACAAGCTGGTGAAGATGCTC
TTAGATGGCCTCGGCGTCAGCATGGCTTCCGAAAGCCTGCCAACCTACCG
CTGCACCTGCTCGGCAGAAAAGGTCTTTCGTGCCTTGAGCCTACTGGGGG
AGGAGGAGGTTGAGGACATCCTGGCAAAAGAGGGGGTTATTGACGCGAAA
TGTGAGTTCTGTGCCGAGAGGTATGAGTTGACTAGGGAGCAGTTGATTGA
GCTTAGAGAGCAGGCGCTGGCGGCGGCGGCGGCGGGGGAGCCCTGGCCGG
CGACCCGGTGA
back to top
Synonyms
Publications