NO06G02240.1, NO06G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02240.1
Unique NameNO06G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2447
Alignment locationchr6:652320..654899 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:652320..654899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02240.1 vs.
Match: EWM26251.1 (co-chaperone hsc20 [Nannochloropsis gaditana])

HSP 1 Score: 396.4 bits (1017), Expect = 1.000e-106
Identity = 200/287 (69.69%), Postives = 238/287 (82.93%), Query Frame = 0 
Query:   80 TLPSSSRQQPRPPTFLRSAGLASTAHNHDTHKPPPFCCGNPNCEHQGADLKEDGYNYENEEVSASKHNHPHTHTDELPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKSYDLDPKELERAFFELQKTMHPDRYMQKSSTEQDFSRSNSTYVNVAYRTLKDPTLRAKYLLQLEGVRALDERSKTADPALLMEVMELREEVDESRKPEALIRLIRRNRKAIDAVKKELIQLYTEKEWTRMVALTNRLQYLSKVGFEAREKLDLLEGEEEKEQRRARLEREE 367
            ++ + +R++PRPP+ + S   ASTAHNHDT+  PPFCCGNPNCEHQ +          +E+ S+ KH+HP +HT++LPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPK YDLD K+LE+ FF LQKTMHPDRY QKSSTEQDFSRSNSTY+NVAYRTLKDP  RAKYLLQLEGV+ALDERSKTADPALLMEVMELREEV+ES   E L  L+ RN++A++ VK+EL     +K+W+RMV+LTNRLQYLSKV FEARE+L+LLEGE + ++RR  + REE
Sbjct:   55 SMRARTRRRPRPPSTVGSDRFASTAHNHDTYHQPPFCCGNPNCEHQQS----------HEDDSSGKHDHPQSHTEDLPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELTARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEGEAD-DRRREAVNREE 330
The following BLAST results are available for this feature:
BLAST of NO06G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26251.11.000e-10669.69co-chaperone hsc20 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02240NO06G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02240.1NO06G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02240.1.cds1NO06G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02240.1.cds2NO06G02240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02240.1 ID=NO06G02240.1|Name=NO06G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp
GCTCACTAGCGCAAAGGACATGTCCAATGTAAATTCTGCGTCGCCGCCTA
GTGATGGCTACGAGCAAGAGAATAGAATATCGGTGGTAATGCGACAGAAG
TTCTTCACCACGTGAGGGCAGGGCAGAGGGGCACCCACGAATCAGGCAAG
CGACGCAATGACCAAAGCAGGCAAGCAGCAATGCGTCACAGCCGATGCGA
AAGCTTGCTGTGATTGGCGTTCTTTCAATCAGACACTAGAAATGTTCACA
GGCGCTGCCCGCGCGGTGTCTGGCGTTGGGTTTTGTGCAGGGTGAGATGT
AGCTGTGATGCTGGCCTCCTTAACACTACGTCAAGCCCCACGCTATATTT
ATACGTGCATACAGACCTACACAAAACCGGCGGGCCCGCAGGCGTGCAGA
CAATGTCCCCTCAAGCAGCATGGTTTGGGAACAATCGAGCCTCGTAGTAC
GTAGGGGTCGTAAGAGGGGTCCAAGTAGGGGGGAGAGGAAGAAAGGAAAA
ATTGGCGATCCGAGCCGCAAAAAAATCATAAATTGCACGAGGCGCCAAGG
AACAGAGGCAAGCCCAAGTAGGCAAAGGCTCTGGAAGGTCCGCTATATTG
GTATGCAGGTACATAGGGCTAGTATGGCTCCACTTTCAGGCCTTGTGTGG
GAGGGGCTTTGCACACGTGCTTGTGCTTGTCTCCCAAGCAAGTCATCTAA
CTCAGCAAGTGCAACGGCAGACCAGCAGCCGAGCAGTACTTGCACTTCTT
CAATTTTGACCCTGCCACAAAACACTTCATGCACATTCCACAGAAAGACA
TGCCACGTCCACCCGCTCTATCTACCACTGTGGCAGGTGCCATTATTAGG
CGCTGGTACTTTGGAGGCTGGGCAGGTGGACGTCGCTCCTGCATTGCTCT
CTCCGTCTACTCCTCGTCAACAGCTCACTCCCGCAGCAGCATGACAACGT
TCTCGATGCCAAGTTGGGTATACTCCTCGTCATCCTCCTCCTCACCCTCT
TCATTACACGACAAAACGCTGCCGTCCAGCTCACGCCAACAGCCCCGGCC
CCCTACCTTCCTACGATCTGCTGGCCTTGCCTCCACAGCACACAACCACG
ACACGCACAAGCCTCCCCCTTTCTGCTGCGGCAACCCTAACTGCGAGCAT
CAAGGGGCCGACTTGAAGGAAGATGGCTATAATTACGAAAATGAAGAAGT
CAGCGCCAGCAAGCACAACCATCCCCATACGCACACGGACGAGCTGCCCC
CCTGCTGGGCCTGCGGGAAACCCACCGGCTGCTGCAACTTCTTCTGCGCC
TGCGGCAAGATTCAACCCCTTATTGGACACTGCTCCTACTTCGAGACATT
TGGATTGCCTAAGTCCTACGACCTTGACCCTAAAGAGCTCGAGCGTGCGT
TTTTTGAACTGCAAAAGACCATGCACCCGGACAGATACATGCAAAAATCG
TCGACTGAACAAGACTTTTCTCGTTCCAACAGCACTTACGTCAATGTCGC
GTATCGCACGTTGAAAGATCCAACGTTGCGCGCGAAATACTTGCTGCAAT
TGGAAGGGGTCCGGGCACTGGATGAGAGGAGTAAGACGGCCGATCCTGCG
TTGTTGATGGAGGTGATGGAGCTGAGGGAGGAGGTGGACGAGAGCAGGAA
GCCGGAGGCGCTGATAAGGTTGATTAGAAGAAATAGGAAGGCAATCGACG
CAGTGAAAAAAGAACTGATACAGCTCTATACCGAGAAGGAATGGACGCGG
ATGGTAGCCCTGACGAACCGACTGCAGTATTTGAGTAAGGTTGGATTCGA
GGCCCGCGAAAAATTGGACCTGCTGGAAGGAGAGGAAGAGAAGGAGCAAC
GCCGAGCGCGATTGGAGCGGGAGGAAGAAGAGGAGGAGGAGGCGACAGCG
AGGAAGGGGCTGCATGCATGAGGCATGCATTCATGAAAGAAGTTGGCCCG
AGAAGATCGGATTGCGCTTGATGAGGGCAGGTGTTGACGGTAGCACCAGT
AGTAATAAGAGTAGCAGCAGTAGGTGTGAGAAGAAATTGAGAGAGGCAGC
AGTTGCCTGCGAGGCGGATGTGCTTTATGGCATGTTGTACAGGAAAGAGC
AAGAGAAGAAGATATGGGAATGTTTTAGCACTTGTATAAATGGTCGATGA
TAGATTGTGGGAGGCGGCGATAACGAGGCTGTGAAAGGCTTGGGTTGGAG
CGAGAGGCGGTGTAAGTAAGTGCACTCTGTTAGGGTTAGTAATAGCAAGC
TAACTTGAAATGTGCGTGGGCGGTGATACTGTGAAGAAGAACAAACAAAT
CTATGATGATGTTTGGTGGTGTTGCGGAATAGGATTCTGAAAGAGTAGAG
GGTGAAGAAGATGAAGGAAAGGAGGGAGATGAAAGAGATACGGGAGAGGG
GGGAACATAACCAGACACAAACAAATTCAATAATTGACAGCTGCCTC
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protein sequence of NO06G02240.1

>NO06G02240.1-protein ID=NO06G02240.1-protein|Name=NO06G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MHIPQKDMPRPPALSTTVAGAIIRRWYFGGWAGGRRSCIALSVYSSSTAH
SRSSMTTFSMPSWVYSSSSSSSPSSLHDKTLPSSSRQQPRPPTFLRSAGL
ASTAHNHDTHKPPPFCCGNPNCEHQGADLKEDGYNYENEEVSASKHNHPH
THTDELPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKSYDLD
PKELERAFFELQKTMHPDRYMQKSSTEQDFSRSNSTYVNVAYRTLKDPTL
RAKYLLQLEGVRALDERSKTADPALLMEVMELREEVDESRKPEALIRLIR
RNRKAIDAVKKELIQLYTEKEWTRMVALTNRLQYLSKVGFEAREKLDLLE
GEEEKEQRRARLEREEEEEEEATARKGLHA*
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mRNA from alignment at chr6:652320..654899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02240.1 ID=NO06G02240.1|Name=NO06G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2580bp|location=Sequence derived from alignment at chr6:652320..654899+ (Nannochloropsis oceanica)
GCTCACTAGCGCAAAGGACATGTCCAATGTAAATTCTGCGTCGCCGCCTA
GTGATGGCTACGAGCAAGAGAATAGAATATCGGTGGTAATGCGACAGAAG
TTCTTCACCACGTGAGGGCAGGGCAGAGGGGCACCCACGAATCAGGCAAG
CGACGCAATGACCAAAGCAGGCAAGCAGCAATGCGTCACAGCCGATGCGA
AAGCTTGCTGTGATTGGCGTTCTTTCAATCAGACACTAGAAATGTTCACA
GGCGCTGCCCGCGCGGTGTCTGGCGTTGGGTTTTGTGCAGGGTGAGATGT
AGCTGTGATGCTGGCCTCCTTAACACTACGTCAAGCCCCACGCTATATTT
ATACGTGCATACAGACCTACACAAAACCGGCGGGCCCGCAGGCGTGCAGA
CAATGTCCCCTCAAGCAGCATGGTTTGGGAACAATCGAGCCTCGTAGTAC
GTAGGGGTCGTAAGAGGGGTCCAAGTAGGGGGGAGAGGAAGAAAGGAAAA
ATTGGCGATCCGAGCCGCAAAAAAATCATAAATTGCACGAGGCGCCAAGG
AACAGAGGCAAGCCCAAGTAGGCAAAGGCTCTGGAAGGTCCGCTATATTG
GTATGCAGGTACATAGGGCTAGTATGGCTCCACTTTCAGGCCTTGTGTGG
GAGGGGCTTTGCACACGTGCTTGTGCTTGTCTCCCAAGCAAGTCATCTAA
CTCAGCAAGTGCAACGGCAGACCAGCAGCCGAGCAGTACTTGCACTTCTT
CAATTTTGACCCTGCCACAAAACACTTCATGCACATTCCACAGAAAGACA
TGCCACGTCCACCCGCTCTATCTACCACTGTGGCAGGTGCCATTATTAGG
CGCTGGTACTTTGGAGGCTGGGCAGGTGGACGTCGCTCCTGCATTGCTCT
CTCCGTCTACTCCTCGTCAACAGCTCACTCCCGCAGCAGCATGACAACGT
TCTCGATGCCAAGTTGGGTATACTCCTCGTCATCCTCCTCCTCACCCTCT
TCATTACACGACAAAACGCTGCCGTCCAGCTCACGCCAACAGCCCCGGCC
CCCTACCTTCCTACGATCTGCTGGCCTTGCCTCCACAGCACACAACCACG
ACACGCACAAGCCTCCCCCTTTCTGCTGCGGCAACCCTAACTGCGAGCAT
CAAGGGGCCGACTTGAAGGAAGATGGCTATAATTACGAAAATGAAGAAGT
CAGCGCCAGCAAGCACAACCATCCCCATACGCACACGGACGAGCTGCCCC
CCTGCTGGGCCTGCGGGAAACCCACCGGCTGCTGCAACTTCTTCTGCGCC
TGCGGCAAGATTCAACCCCTTATTGGACACTGCTCCTACTTCGAGACATT
TGGATTGCCTAAGTCCTACGACCTTGACCCTAAAGAGCTCGAGCGTGCGT
TTTTTGAACTGCAAAAGACCATGCACCCGGACAGATACATGCAAAAATCG
TCGACTGAACAAGACTTTTCTCGTTCCAACAGCACTTACGTCAATGTCGC
GTATCGCACGTTGAAAGATCCAACGTTGCGCGCGAAATACTTGCTGCAAT
TGGAAGGGGTCCGGGCACTGGATGAGAGGAGTAAGACGGCCGATCCTGCG
TTGTTGATGGAGGTGATGGAGCTGAGGGAGGAGGTGGACGAGAGCAGGAA
GCCGGAGGCGCTGATAAGGTTGATTAGAAGAAATAGGAAGGCAATCGACG
CAGTGAAAAAAGAACTGATACAGCTCTATACCGAGAAGGTACGTGGTGGA
GGCGTTGGGTTTGAGGGAGGGCTGGGTGGGTGGGGTGCAATGCGGTGCGC
TTTGCTCCCGCACGTCTCCCATAAGTCTCATTCCCTCCCCCCTCCCTCCT
TATCTCCCTCCCTTCGTTCAGGAATGGACGCGGATGGTAGCCCTGACGAA
CCGACTGCAGTATTTGAGTAAGGTTGGATTCGAGGCCCGCGAAAAATTGG
ACCTGCTGGAAGGAGAGGAAGAGAAGGAGCAACGCCGAGCGCGATTGGAG
CGGGAGGAAGAAGAGGAGGAGGAGGCGACAGCGAGGAAGGGGCTGCATGC
ATGAGGCATGCATTCATGAAAGAAGTTGGCCCGAGAAGATCGGATTGCGC
TTGATGAGGGCAGGTGTTGACGGTAGCACCAGTAGTAATAAGAGTAGCAG
CAGTAGGTGTGAGAAGAAATTGAGAGAGGCAGCAGTTGCCTGCGAGGCGG
ATGTGCTTTATGGCATGTTGTACAGGAAAGAGCAAGAGAAGAAGATATGG
GAATGTTTTAGCACTTGTATAAATGGTCGATGATAGATTGTGGGAGGCGG
CGATAACGAGGCTGTGAAAGGCTTGGGTTGGAGCGAGAGGCGGTGTAAGT
AAGTGCACTCTGTTAGGGTTAGTAATAGCAAGCTAACTTGAAATGTGCGT
GGGCGGTGATACTGTGAAGAAGAACAAACAAATCTATGATGATGTTTGGT
GGTGTTGCGGAATAGGATTCTGAAAGAGTAGAGGGTGAAGAAGATGAAGG
AAAGGAGGGAGATGAAAGAGATACGGGAGAGGGGGGAACATAACCAGACA
CAAACAAATTCAATAATTGACAGCTGCCTC
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Coding sequence (CDS) from alignment at chr6:652320..654899+

>NO06G02240.1 ID=NO06G02240.1|Name=NO06G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr6:652320..654899+ (Nannochloropsis oceanica)
ATGCACATTCCACAGAAAGACATGCCACGTCCACCCGCTCTATCTACCAC
TGTGGCAGGTGCCATTATTAGGCGCTGGTACTTTGGAGGCTGGGCAGGTG
GACGTCGCTCCTGCATTGCTCTCTCCGTCTACTCCTCGTCAACAGCTCAC
TCCCGCAGCAGCATGACAACGTTCTCGATGCCAAGTTGGGTATACTCCTC
GTCATCCTCCTCCTCACCCTCTTCATTACACGACAAAACGCTGCCGTCCA
GCTCACGCCAACAGCCCCGGCCCCCTACCTTCCTACGATCTGCTGGCCTT
GCCTCCACAGCACACAACCACGACACGCACAAGCCTCCCCCTTTCTGCTG
CGGCAACCCTAACTGCGAGCATCAAGGGGCCGACTTGAAGGAAGATGGCT
ATAATTACGAAAATGAAGAAGTCAGCGCCAGCAAGCACAACCATCCCCAT
ACGCACACGGACGAGCTGCCCCCCTGCTGGGCCTGCGGGAAACCCACCGG
CTGCTGCAACTTCTTCTGCGCCTGCGGCAAGATTCAACCCCTTATTGGAC
ACTGCTCCTACTTCGAGACATTTGGATTGCCTAAGTCCTACGACCTTGAC
CCTAAAGAGCTCGAGCGTGCGTTTTTTGAACTGCAAAAGACCATGCACCC
GGACAGATACATGCAAAAATCGTCGACTGAACAAGACTTTTCTCGTTCCA
ACAGCACTTACGTCAATGTCGCGTATCGCACGTTGAAAGATCCAACGTTG
CGCGCGAAATACTTGCTGCAATTGGAAGGGGTCCGGGCACTGGATGAGAG
GAGTAAGACGGCCGATCCTGCGTTGTTGATGGAGGTGATGGAGCTGAGGG
AGGAGGTGGACGAGAGCAGGAAGCCGGAGGCGCTGATAAGGTTGATTAGA
AGAAATAGGAAGGCAATCGACGCAGTGAAAAAAGAACTGATACAGCTCTA
TACCGAGAAGGAATGGACGCGGATGGTAGCCCTGACGAACCGACTGCAGT
ATTTGAGTAAGGTTGGATTCGAGGCCCGCGAAAAATTGGACCTGCTGGAA
GGAGAGGAAGAGAAGGAGCAACGCCGAGCGCGATTGGAGCGGGAGGAAGA
AGAGGAGGAGGAGGCGACAGCGAGGAAGGGGCTGCATGCATGA
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Synonyms
Publications