NO06G02100.1, NO06G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02100.1
Unique NameNO06G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4529
Alignment locationchr6:613580..618108 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:613580..618108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02100.1 vs.
Match: EWM26222.1 (morn repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1591.2 bits (4119), Expect = 0.000e+0
Identity = 837/1391 (60.17%), Postives = 989/1391 (71.10%), Query Frame = 0
Query:   63 ISTFDRKLKEAALERSAVALLVVKHVHP-GGRPVPYKLVPDYRKEDLPNPFLEEMLREASGRLGECLPERYCR----DGAPHDANSDTSASSLSSP------AADIVCLAPQLVGTLTDCCYFILHLGDTPPPSTNPFDDDPELYPPASAVSSSSQAYLADSNVSDRTPPTTAPSLSPRLKYMSLRARSRRVYGICRRAPSLQSNSVILLSATPCFELLRHQFLSLTSTYFQNKCQDDEGDMRAFLLAISNPTTGTLHREVASFQSRSVPVMWLINLLGIEHILGLVKLLLLEGRLLFFSSKPYKSSSAVLALISLIPGLYNQALSNNAEPLTALHSYRWRKYGMPLQIFHKDNYALQPLLVLSGAQAFFLKYPGFLVGTSNPCISKLPSAQLDAVVDLDTCAIDSQRFSSPSSFPFSLAYDVSPTSTAGLCEYQQQQQQQKEEEGREGGREEGREGRRPCRSPTWLMVDLARIAFEYGPADADFLEEVLEGLPTSQDNQAQQRHVKQQEQGQEQEQEQEQEQEQEQEQEQAGWNGSDGWIRASFQKYFENFLAQAALALHSTIRDGAAASVASLSSSWVRKAVTGLLQANPRTTCGFDVKLMDYNRAWVGQWTTTLNFRIWHDHYPHSCLPSDSFSGSNSISSSSSSSSSGKSSSSSSSSGSRGRKKSLPMLLASASFSMSGGEGGEGREEEGGGGGSDGAVECFTYPNGDTYQGKMQSGKRQGVGTYVEHATGNTYEGDWMRDMRHGHGILTTGARDFLYDGGWVRDKREGLGCCVIRGRETYIGGFVENRYQGQGQLVESDGSVYEGEWREGKREGLGTWKKADGEVYVGEWKEGGREGVGTCQYLDGSKYSGEWKQGGRCGEGTFVAAPALAMAAAAGAAPDREGGGGEGGGGGGMDAATASTTGLAAVTEDFFEGQWVADQRHGWGVQKFVNGDIKEGEWHQDKPQDGEWKITYASGDQFVGECKAGKPHGLGTCKYSNGDVYTGEWEGGLRAGEGVCVFARASGKERIEGRWWGDRPVVGDFDCTPAICHEEG------EGRVEGGKDGRRPNTQRRLLMAVKGPPSPRKALAMPATSLEEIARMSGKDCVVVYPCSGDTYVGEMKAGKRHGVGVYVEKKSGNKYEGGFEEDLRHGHGVLSSGMKDFLYDGEWVRGRRTGKGTCVVKGRESYTGEWLDDVYHGKGRVVDAAGDTYEGEYMKGRREGAGTLTSTDGEVYVGEWKEGRREGVGQCQYANGACYSGDWRRDRWNGEGVFVSPEGEKHEGLWSEGRRQGWGLWTSTTGDVIEGEWLMDEPKDGEWKITYSNGDQFVGTCREGRPEGYGICKYANGAVYSGEWKEGGREGQGKCVFANGEIYDGVWERDHVSLRGLGTLSFQDGRVHEFS 1437
            +S++D KLKEAALERSAV LLVVKH+   GGRPVP+KLVPD+RKE+L NP++EEMLRE+SGRL ECLPE YC       A  D  +D   S+ +        AA+IV LAP+L+GTLTDCCYFIL+LGDTPPPSTNPFDDDP+LYP  SA+S+S  A L +S  + +    +AP  S    YMSLRAR RRVYGICRRAP   S SV+LLSATPCF++L+HQF+SLT+ +F    QDD GD+RAFLLAISNPTTG LHRE AS   R VPV+WL+ LLGIEH+LGLVKLLLLEGR+LF SSKPYKSSSAVLAL++LIPGLY QAL +   P  AL  YRW K+GMPL+IFH+D + LQPLLV+S A +FF K PGFLVGTSNP IS LPSA+LDAVV+LDTC IDSQRFS+              T+   + +     +        E   E GRE    C SPT LMVDLARIAFEYGPAD DFLE+V+E LPT  D +A            ++E       E E E     W GSD WIR SFQ YFE FL  AALALH  +RDGAAA+  S+SSSW+RKA+TGLLQA PR+TCGFDVKLMDYNRAWVGQWTTTLNFRIWHD YPH CLP D  S  N  +S +  S S    SS+  SG+  RK + P                            DG V+ + YPNGDTYQG+M+ G+RQG G+YVEHATGNTYEGDW++DMRHG GILTTGARDFLYDG WV DKR+G G C IRGR TY GGF EN++ GQG+ V+S+G+VYEG W  G +EG+GT ++A GE Y GEWK G R G+GTCQ+   S+Y+GEW++G R GEG  V A A          P+     G+GG                    + +EGQW+ D+RHGWGV    +GD++EGEW+QDK +DGE K+TYA GDQ++GEC  G+PHG GTCK+ NGDVY G WE G+RAGEGVC++A     E  +G W  DRP VG+    P+I  EEG       G+  G       N +RRLL  V  P S  KA+    T L EIARMSG DC ++YP +GDTY G M  GKRHG G+Y EK SGN+YEG F  D RHGHGVL SG KDFLYDGEW+  RRTG+G C +KG+E+YTGEW +D YHGKG+ VDA G+T+EGE+++GRREG GTL  T+GEV++GEWK G++EGVGQCQYA+G CYSG+W +DRW+GEGVF++  G+KHEG WSEG+R GWG WTS TGDVIEGEW  DEPKDGEWKITYSNGDQFVG CREGRPEG+GICKYANGAVYSG W+EG R GQGKCVFANGEIYDG+WE+D VSLRGLGTLSFQDGRVH FS
Sbjct:    4 MSSYDLKLKEAALERSAVCLLVVKHIDSDGGRPVPHKLVPDFRKEELCNPYIEEMLRESSGRLLECLPEMYCSTTRCSAAVRDTETDVDHSASNGGIQPATYAANIVRLAPELLGTLTDCCYFILYLGDTPPPSTNPFDDDPDLYPSPSAISTSVPA-LGESVRTTKNGTCSAPIPS----YMSLRARRRRVYGICRRAPPSISYSVLLLSATPCFDVLQHQFMSLTTAFFNRNFQDDTGDLRAFLLAISNPTTGILHRETASHY-RDVPVLWLVKLLGIEHVLGLVKLLLLEGRILFHSSKPYKSSSAVLALLTLIPGLYTQALEDEEGPSRALRGYRWSKFGMPLRIFHEDKFVLQPLLVISKATSFFDKNPGFLVGTSNPLISALPSARLDAVVNLDTCQIDSQRFSAL-------------TAAGSVIDDASTSRSSAASTHTEPCSERGRESA--CVSPTSLMVDLARIAFEYGPADVDFLEQVMESLPTPDDREAV-----------DEEGRASLSGESEGEGASVEWEGSDSWIRQSFQSYFERFLELAALALHEFMRDGAAAT--SMSSSWMRKAMTGLLQATPRSTCGFDVKLMDYNRAWVGQWTTTLNFRIWHDQYPHPCLPPDDPSPQNKHNSPTLLSLSSFPFSSAKESGAALRKDAPP-------------------------APGDGVVD-YVYPNGDTYQGEMRGGQRQGKGSYVEHATGNTYEGDWVKDMRHGQGILTTGARDFLYDGDWVLDKRQGQGHCTIRGRATYSGGFAENKFHGQGKFVDSEGNVYEGGWARGLKEGMGTLRRAGGESYAGEWKGGQRHGLGTCQF-GSSQYTGEWREGKRSGEGKMVVAVA--------TGPEATSSEGQGG-------------------RETYEGQWLEDERHGWGVHTSADGDVREGEWYQDKLKDGECKVTYACGDQYLGECLDGRPHGHGTCKFVNGDVYMGGWEDGVRAGEGVCIYASG---ETYQGMWVADRPAVGECSSIPSIHEEEGGEDGLGRGKAVGNATATVDNPRRRLL--VHAPTSSSKAVGPAPTPLAEIARMSGPDCWILYPGTGDTYEGSMLQGKRHGQGIYREKASGNRYEGSFRADHRHGHGVLVSGGKDFLYDGEWLDDRRTGRGHCTLKGKETYTGEWFEDAYHGKGKHVDAGGNTFEGEHVRGRREGLGTLLCTNGEVFIGEWKNGQKEGVGQCQYADGGCYSGEWYQDRWHGEGVFLAASGDKHEGSWSEGKRMGWGAWTSPTGDVIEGEWYQDEPKDGEWKITYSNGDQFVGACREGRPEGFGICKYANGAVYSGHWEEGLRAGQGKCVFANGEIYDGLWEKDRVSLRGLGTLSFQDGRVHNFS 1301          
The following BLAST results are available for this feature:
BLAST of NO06G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26222.10.000e+060.17morn repeat containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02100NO06G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02100.1NO06G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02100.1.cds1NO06G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02100.1 ID=NO06G02100.1|Name=NO06G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=4529bp
ATGGACGCCACCACCAGGCGTATCCCGGTGGAAGAGGAGGAGCAGGAGCA
GAAGCAAGAAAACTCTTCGGGCCATGTCATGGTGAAGCAAGCCTCTCTAC
CCTCCTCGTCCTCGTCGAGCATCACACCCTCCTCGCTACTCGCCAGAGGC
GCCTCGACGCGGAGCATACCTTCTTCACGGCCCCGGATTAGCACGTTTGA
CCGGAAGCTCAAGGAGGCAGCACTCGAGCGCTCGGCCGTGGCCCTTCTAG
TCGTCAAGCATGTACACCCAGGAGGGCGGCCGGTGCCGTACAAGCTGGTG
CCGGACTATCGCAAGGAAGACTTGCCCAACCCTTTCTTGGAGGAAATGCT
TCGGGAAGCGTCGGGGAGGCTGGGCGAATGCCTGCCGGAGCGCTACTGTA
GGGATGGCGCTCCTCACGACGCGAACTCGGACACGAGTGCTTCCTCCTTA
TCCTCTCCTGCTGCCGACATTGTCTGTCTGGCGCCGCAGCTCGTGGGGAC
GTTGACGGATTGCTGCTATTTCATTCTTCATTTGGGCGACACTCCGCCAC
CTTCCACAAACCCCTTTGATGACGATCCAGAACTTTACCCACCCGCCTCT
GCTGTCTCGTCCTCCTCCCAAGCCTATCTCGCCGACAGCAATGTTAGCGA
TCGCACACCTCCCACCACTGCACCTTCATTGAGTCCAAGATTAAAGTACA
TGAGTTTACGCGCGCGAAGTCGCCGCGTCTATGGTATATGTCGTCGGGCT
CCCTCCCTACAGTCCAACAGCGTCATCCTCCTCTCTGCCACCCCCTGCTT
CGAGCTCCTCCGCCATCAATTTCTATCCCTCACCTCCACCTACTTCCAAA
ATAAGTGCCAAGATGACGAAGGGGACATGCGGGCCTTTCTCCTTGCCATC
TCGAACCCCACCACAGGCACCCTTCACCGAGAAGTCGCCTCGTTCCAATC
CCGTAGTGTCCCGGTCATGTGGCTTATCAATCTCCTCGGGATCGAACACA
TCCTCGGCTTAGTTAAACTCCTCCTCCTCGAAGGCCGCCTCCTCTTCTTC
TCCTCCAAACCTTACAAGTCCAGCAGCGCCGTCCTCGCCCTCATCTCCCT
GATTCCCGGACTCTATAACCAAGCCCTCTCCAACAACGCAGAGCCCCTCA
CTGCCCTCCACTCCTACCGCTGGCGGAAATATGGCATGCCCTTACAGATA
TTCCACAAAGACAATTACGCCCTCCAACCCCTCCTCGTCCTTAGTGGAGC
CCAAGCATTCTTCCTAAAATATCCTGGTTTCTTAGTGGGGACTTCGAACC
CCTGCATCAGCAAATTGCCGAGCGCGCAACTCGACGCTGTGGTCGACCTG
GACACGTGTGCAATAGACTCGCAACGCTTCTCCTCCCCCTCTTCCTTCCC
TTTCTCTTTAGCTTATGATGTCTCACCGACCAGCACTGCGGGTCTGTGCG
AATATCAGCAGCAGCAGCAGCAGCAGAAGGAGGAGGAGGGCAGGGAGGGA
GGGAGGGAGGAAGGGAGAGAGGGAAGGAGGCCGTGTCGGTCCCCGACATG
GCTGATGGTGGATCTGGCGAGGATAGCATTTGAATATGGTCCAGCTGATG
CAGACTTTTTGGAGGAGGTGCTAGAGGGGTTGCCTACTTCACAGGATAAT
CAAGCACAGCAGCGGCACGTGAAGCAGCAGGAGCAGGGGCAGGAGCAGGA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGCAG
GGTGGAATGGAAGCGATGGATGGATCCGGGCATCATTTCAAAAATATTTC
GAGAATTTTCTGGCTCAGGCCGCCTTGGCCCTGCATAGCACCATCCGGGA
TGGCGCCGCTGCTTCTGTTGCTTCTTTATCCTCTTCCTGGGTGCGGAAAG
CTGTGACTGGATTGCTGCAAGCCAACCCCCGAACAACGTGTGGTTTTGAC
GTCAAGTTGATGGACTATAATAGGGCATGGGTGGGTCAGTGGACGACGAC
TTTAAATTTTAGGATATGGCATGACCATTACCCTCACTCGTGTTTGCCAT
CTGATTCTTTCAGCGGCAGCAATAGCATAAGTAGTAGTAGTAGTAGTAGT
AGCAGTGGTAAAAGTAGCAGTAGCAGTAGTAGTAGCGGTAGCCGTGGTCG
TAAGAAGTCGTTGCCTATGTTGCTGGCGTCCGCGTCGTTTTCGATGTCGG
GAGGAGAAGGAGGAGAAGGGAGAGAAGAAGAAGGGGGAGGGGGAGGGTCG
GATGGGGCGGTAGAGTGTTTTACATACCCAAATGGCGATACTTATCAAGG
TAAGATGCAATCAGGGAAGAGGCAGGGCGTGGGGACATACGTTGAACACG
CCACCGGTAACACTTACGAAGGCGATTGGATGAGAGACATGCGGCATGGT
CATGGCATTCTTACCACGGGAGCGCGTGATTTTTTGTACGATGGAGGGTG
GGTGAGGGATAAGAGGGAGGGGCTGGGATGTTGTGTGATCCGGGGGCGAG
AGACGTATATCGGTGGGTTTGTGGAGAATCGGTACCAGGGGCAGGGGCAA
TTGGTGGAATCGGACGGGAGTGTGTATGAAGGGGAATGGAGGGAGGGAAA
AAGGGAGGGGCTAGGGACGTGGAAGAAGGCGGATGGGGAGGTTTATGTTG
GGGAGTGGAAGGAGGGAGGAAGGGAGGGGGTGGGGACGTGCCAATATTTG
GACGGTTCGAAATATTCGGGGGAATGGAAACAAGGAGGTCGGTGCGGGGA
AGGAACGTTTGTTGCTGCTCCTGCTTTAGCAATGGCAGCAGCAGCCGGAG
CAGCACCAGACAGAGAAGGAGGAGGAGGAGAAGGAGGTGGCGGCGGAGGG
ATGGATGCTGCTACTGCTTCCACTACCGGTCTTGCTGCTGTCACAGAAGA
TTTTTTTGAAGGTCAGTGGGTAGCGGACCAGAGGCATGGATGGGGTGTGC
AGAAGTTTGTTAATGGTGACATCAAAGAGGGGGAATGGCACCAAGATAAG
CCACAGGACGGGGAATGGAAGATAACGTATGCGTCGGGCGATCAATTTGT
GGGGGAATGCAAGGCGGGGAAGCCGCATGGGCTTGGGACGTGTAAATATT
CGAATGGCGACGTTTATACAGGGGAATGGGAGGGGGGTTTGAGGGCGGGG
GAGGGTGTGTGTGTCTTTGCCCGGGCATCGGGGAAGGAGAGGATTGAAGG
ACGCTGGTGGGGGGATCGTCCGGTGGTAGGTGATTTTGATTGTACTCCAG
CAATTTGTCATGAGGAAGGGGAGGGAAGGGTGGAGGGAGGGAAAGACGGC
CGCCGTCCGAATACACAACGACGGTTGTTGATGGCCGTGAAGGGGCCCCC
TTCTCCGCGAAAGGCGCTTGCAATGCCAGCGACGTCGTTGGAGGAAATTG
CGCGAATGTCGGGCAAGGACTGTGTGGTTGTGTATCCTTGCTCCGGGGAT
ACCTATGTTGGTGAAATGAAGGCGGGAAAAAGACATGGCGTAGGGGTGTA
CGTGGAAAAGAAATCCGGGAATAAGTATGAAGGAGGGTTTGAGGAGGATC
TCAGGCATGGACACGGGGTGTTGTCGTCGGGGATGAAGGATTTTCTGTAC
GATGGGGAGTGGGTGCGGGGCCGAAGAACGGGGAAGGGCACATGTGTGGT
GAAGGGAAGGGAGAGTTACACGGGTGAGTGGTTGGATGATGTGTACCACG
GCAAGGGAAGAGTTGTGGATGCTGCGGGTGACACGTACGAGGGGGAGTAT
ATGAAGGGACGGAGGGAGGGCGCCGGGACGTTGACGAGTACGGATGGGGA
GGTGTACGTAGGTGAATGGAAGGAGGGAAGGAGGGAGGGGGTGGGTCAGT
GTCAGTATGCGAATGGGGCGTGTTATTCCGGGGATTGGAGGAGGGATAGG
TGGAATGGGGAAGGGGTATTTGTGAGTCCTGAGGGGGAGAAGCATGAAGG
ATTGTGGAGTGAGGGAAGGAGGCAGGGGTGGGGGCTTTGGACGTCGACCA
CGGGGGATGTGATCGAGGGAGAGTGGTTGATGGATGAACCCAAGGATGGG
GAGTGGAAAATAACGTACAGCAATGGCGATCAGTTCGTGGGAACATGCAG
GGAGGGACGGCCGGAGGGGTATGGGATTTGTAAGTACGCGAATGGCGCGG
TGTATTCGGGAGAGTGGAAGGAGGGCGGGAGGGAGGGGCAGGGCAAGTGT
GTCTTTGCAAATGGGGAGATCTATGATGGGGTGTGGGAGAGGGATCACGT
GAGTTTGAGGGGCTTGGGCACACTGAGCTTTCAGGATGGTAGAGTACATG
AGTTTTCATAGACGAGGGGGAGGGAGGGGAAAAGGGAGGAATGGAGGAAA
GCAGGTCTTCCATCATGGACACCTACGTGGCTATTCGATGTGGAGGGAAG
GGAGGGAGGGAGGGAAGGCGGGAAGAAGAATTAGGATTCAAAATAGAACG
ACGTGTACATCAAATGTCAAGAAAGTATTTTTTGAACTCTTATCCTTGCT
TTACAATTATATTTGCTTTTTTCATTTCT
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protein sequence of NO06G02100.1

>NO06G02100.1-protein ID=NO06G02100.1-protein|Name=NO06G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1437bp
MDATTRRIPVEEEEQEQKQENSSGHVMVKQASLPSSSSSSITPSSLLARG
ASTRSIPSSRPRISTFDRKLKEAALERSAVALLVVKHVHPGGRPVPYKLV
PDYRKEDLPNPFLEEMLREASGRLGECLPERYCRDGAPHDANSDTSASSL
SSPAADIVCLAPQLVGTLTDCCYFILHLGDTPPPSTNPFDDDPELYPPAS
AVSSSSQAYLADSNVSDRTPPTTAPSLSPRLKYMSLRARSRRVYGICRRA
PSLQSNSVILLSATPCFELLRHQFLSLTSTYFQNKCQDDEGDMRAFLLAI
SNPTTGTLHREVASFQSRSVPVMWLINLLGIEHILGLVKLLLLEGRLLFF
SSKPYKSSSAVLALISLIPGLYNQALSNNAEPLTALHSYRWRKYGMPLQI
FHKDNYALQPLLVLSGAQAFFLKYPGFLVGTSNPCISKLPSAQLDAVVDL
DTCAIDSQRFSSPSSFPFSLAYDVSPTSTAGLCEYQQQQQQQKEEEGREG
GREEGREGRRPCRSPTWLMVDLARIAFEYGPADADFLEEVLEGLPTSQDN
QAQQRHVKQQEQGQEQEQEQEQEQEQEQEQEQAGWNGSDGWIRASFQKYF
ENFLAQAALALHSTIRDGAAASVASLSSSWVRKAVTGLLQANPRTTCGFD
VKLMDYNRAWVGQWTTTLNFRIWHDHYPHSCLPSDSFSGSNSISSSSSSS
SSGKSSSSSSSSGSRGRKKSLPMLLASASFSMSGGEGGEGREEEGGGGGS
DGAVECFTYPNGDTYQGKMQSGKRQGVGTYVEHATGNTYEGDWMRDMRHG
HGILTTGARDFLYDGGWVRDKREGLGCCVIRGRETYIGGFVENRYQGQGQ
LVESDGSVYEGEWREGKREGLGTWKKADGEVYVGEWKEGGREGVGTCQYL
DGSKYSGEWKQGGRCGEGTFVAAPALAMAAAAGAAPDREGGGGEGGGGGG
MDAATASTTGLAAVTEDFFEGQWVADQRHGWGVQKFVNGDIKEGEWHQDK
PQDGEWKITYASGDQFVGECKAGKPHGLGTCKYSNGDVYTGEWEGGLRAG
EGVCVFARASGKERIEGRWWGDRPVVGDFDCTPAICHEEGEGRVEGGKDG
RRPNTQRRLLMAVKGPPSPRKALAMPATSLEEIARMSGKDCVVVYPCSGD
TYVGEMKAGKRHGVGVYVEKKSGNKYEGGFEEDLRHGHGVLSSGMKDFLY
DGEWVRGRRTGKGTCVVKGRESYTGEWLDDVYHGKGRVVDAAGDTYEGEY
MKGRREGAGTLTSTDGEVYVGEWKEGRREGVGQCQYANGACYSGDWRRDR
WNGEGVFVSPEGEKHEGLWSEGRRQGWGLWTSTTGDVIEGEWLMDEPKDG
EWKITYSNGDQFVGTCREGRPEGYGICKYANGAVYSGEWKEGGREGQGKC
VFANGEIYDGVWERDHVSLRGLGTLSFQDGRVHEFS*
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mRNA from alignment at chr6:613580..618108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02100.1 ID=NO06G02100.1|Name=NO06G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=4529bp|location=Sequence derived from alignment at chr6:613580..618108+ (Nannochloropsis oceanica)
ATGGACGCCACCACCAGGCGTATCCCGGTGGAAGAGGAGGAGCAGGAGCA GAAGCAAGAAAACTCTTCGGGCCATGTCATGGTGAAGCAAGCCTCTCTAC CCTCCTCGTCCTCGTCGAGCATCACACCCTCCTCGCTACTCGCCAGAGGC GCCTCGACGCGGAGCATACCTTCTTCACGGCCCCGGATTAGCACGTTTGA CCGGAAGCTCAAGGAGGCAGCACTCGAGCGCTCGGCCGTGGCCCTTCTAG TCGTCAAGCATGTACACCCAGGAGGGCGGCCGGTGCCGTACAAGCTGGTG CCGGACTATCGCAAGGAAGACTTGCCCAACCCTTTCTTGGAGGAAATGCT TCGGGAAGCGTCGGGGAGGCTGGGCGAATGCCTGCCGGAGCGCTACTGTA GGGATGGCGCTCCTCACGACGCGAACTCGGACACGAGTGCTTCCTCCTTA TCCTCTCCTGCTGCCGACATTGTCTGTCTGGCGCCGCAGCTCGTGGGGAC GTTGACGGATTGCTGCTATTTCATTCTTCATTTGGGCGACACTCCGCCAC CTTCCACAAACCCCTTTGATGACGATCCAGAACTTTACCCACCCGCCTCT GCTGTCTCGTCCTCCTCCCAAGCCTATCTCGCCGACAGCAATGTTAGCGA TCGCACACCTCCCACCACTGCACCTTCATTGAGTCCAAGATTAAAGTACA TGAGTTTACGCGCGCGAAGTCGCCGCGTCTATGGTATATGTCGTCGGGCT CCCTCCCTACAGTCCAACAGCGTCATCCTCCTCTCTGCCACCCCCTGCTT CGAGCTCCTCCGCCATCAATTTCTATCCCTCACCTCCACCTACTTCCAAA ATAAGTGCCAAGATGACGAAGGGGACATGCGGGCCTTTCTCCTTGCCATC TCGAACCCCACCACAGGCACCCTTCACCGAGAAGTCGCCTCGTTCCAATC CCGTAGTGTCCCGGTCATGTGGCTTATCAATCTCCTCGGGATCGAACACA TCCTCGGCTTAGTTAAACTCCTCCTCCTCGAAGGCCGCCTCCTCTTCTTC TCCTCCAAACCTTACAAGTCCAGCAGCGCCGTCCTCGCCCTCATCTCCCT GATTCCCGGACTCTATAACCAAGCCCTCTCCAACAACGCAGAGCCCCTCA CTGCCCTCCACTCCTACCGCTGGCGGAAATATGGCATGCCCTTACAGATA TTCCACAAAGACAATTACGCCCTCCAACCCCTCCTCGTCCTTAGTGGAGC CCAAGCATTCTTCCTAAAATATCCTGGTTTCTTAGTGGGGACTTCGAACC CCTGCATCAGCAAATTGCCGAGCGCGCAACTCGACGCTGTGGTCGACCTG GACACGTGTGCAATAGACTCGCAACGCTTCTCCTCCCCCTCTTCCTTCCC TTTCTCTTTAGCTTATGATGTCTCACCGACCAGCACTGCGGGTCTGTGCG AATATCAGCAGCAGCAGCAGCAGCAGAAGGAGGAGGAGGGCAGGGAGGGA GGGAGGGAGGAAGGGAGAGAGGGAAGGAGGCCGTGTCGGTCCCCGACATG GCTGATGGTGGATCTGGCGAGGATAGCATTTGAATATGGTCCAGCTGATG CAGACTTTTTGGAGGAGGTGCTAGAGGGGTTGCCTACTTCACAGGATAAT CAAGCACAGCAGCGGCACGTGAAGCAGCAGGAGCAGGGGCAGGAGCAGGA GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGCAG GGTGGAATGGAAGCGATGGATGGATCCGGGCATCATTTCAAAAATATTTC GAGAATTTTCTGGCTCAGGCCGCCTTGGCCCTGCATAGCACCATCCGGGA TGGCGCCGCTGCTTCTGTTGCTTCTTTATCCTCTTCCTGGGTGCGGAAAG CTGTGACTGGATTGCTGCAAGCCAACCCCCGAACAACGTGTGGTTTTGAC GTCAAGTTGATGGACTATAATAGGGCATGGGTGGGTCAGTGGACGACGAC TTTAAATTTTAGGATATGGCATGACCATTACCCTCACTCGTGTTTGCCAT CTGATTCTTTCAGCGGCAGCAATAGCATAAGTAGTAGTAGTAGTAGTAGT AGCAGTGGTAAAAGTAGCAGTAGCAGTAGTAGTAGCGGTAGCCGTGGTCG TAAGAAGTCGTTGCCTATGTTGCTGGCGTCCGCGTCGTTTTCGATGTCGG GAGGAGAAGGAGGAGAAGGGAGAGAAGAAGAAGGGGGAGGGGGAGGGTCG GATGGGGCGGTAGAGTGTTTTACATACCCAAATGGCGATACTTATCAAGG TAAGATGCAATCAGGGAAGAGGCAGGGCGTGGGGACATACGTTGAACACG CCACCGGTAACACTTACGAAGGCGATTGGATGAGAGACATGCGGCATGGT CATGGCATTCTTACCACGGGAGCGCGTGATTTTTTGTACGATGGAGGGTG GGTGAGGGATAAGAGGGAGGGGCTGGGATGTTGTGTGATCCGGGGGCGAG AGACGTATATCGGTGGGTTTGTGGAGAATCGGTACCAGGGGCAGGGGCAA TTGGTGGAATCGGACGGGAGTGTGTATGAAGGGGAATGGAGGGAGGGAAA AAGGGAGGGGCTAGGGACGTGGAAGAAGGCGGATGGGGAGGTTTATGTTG GGGAGTGGAAGGAGGGAGGAAGGGAGGGGGTGGGGACGTGCCAATATTTG GACGGTTCGAAATATTCGGGGGAATGGAAACAAGGAGGTCGGTGCGGGGA AGGAACGTTTGTTGCTGCTCCTGCTTTAGCAATGGCAGCAGCAGCCGGAG CAGCACCAGACAGAGAAGGAGGAGGAGGAGAAGGAGGTGGCGGCGGAGGG ATGGATGCTGCTACTGCTTCCACTACCGGTCTTGCTGCTGTCACAGAAGA TTTTTTTGAAGGTCAGTGGGTAGCGGACCAGAGGCATGGATGGGGTGTGC AGAAGTTTGTTAATGGTGACATCAAAGAGGGGGAATGGCACCAAGATAAG CCACAGGACGGGGAATGGAAGATAACGTATGCGTCGGGCGATCAATTTGT GGGGGAATGCAAGGCGGGGAAGCCGCATGGGCTTGGGACGTGTAAATATT CGAATGGCGACGTTTATACAGGGGAATGGGAGGGGGGTTTGAGGGCGGGG GAGGGTGTGTGTGTCTTTGCCCGGGCATCGGGGAAGGAGAGGATTGAAGG ACGCTGGTGGGGGGATCGTCCGGTGGTAGGTGATTTTGATTGTACTCCAG CAATTTGTCATGAGGAAGGGGAGGGAAGGGTGGAGGGAGGGAAAGACGGC CGCCGTCCGAATACACAACGACGGTTGTTGATGGCCGTGAAGGGGCCCCC TTCTCCGCGAAAGGCGCTTGCAATGCCAGCGACGTCGTTGGAGGAAATTG CGCGAATGTCGGGCAAGGACTGTGTGGTTGTGTATCCTTGCTCCGGGGAT ACCTATGTTGGTGAAATGAAGGCGGGAAAAAGACATGGCGTAGGGGTGTA CGTGGAAAAGAAATCCGGGAATAAGTATGAAGGAGGGTTTGAGGAGGATC TCAGGCATGGACACGGGGTGTTGTCGTCGGGGATGAAGGATTTTCTGTAC GATGGGGAGTGGGTGCGGGGCCGAAGAACGGGGAAGGGCACATGTGTGGT GAAGGGAAGGGAGAGTTACACGGGTGAGTGGTTGGATGATGTGTACCACG GCAAGGGAAGAGTTGTGGATGCTGCGGGTGACACGTACGAGGGGGAGTAT ATGAAGGGACGGAGGGAGGGCGCCGGGACGTTGACGAGTACGGATGGGGA GGTGTACGTAGGTGAATGGAAGGAGGGAAGGAGGGAGGGGGTGGGTCAGT GTCAGTATGCGAATGGGGCGTGTTATTCCGGGGATTGGAGGAGGGATAGG TGGAATGGGGAAGGGGTATTTGTGAGTCCTGAGGGGGAGAAGCATGAAGG ATTGTGGAGTGAGGGAAGGAGGCAGGGGTGGGGGCTTTGGACGTCGACCA CGGGGGATGTGATCGAGGGAGAGTGGTTGATGGATGAACCCAAGGATGGG GAGTGGAAAATAACGTACAGCAATGGCGATCAGTTCGTGGGAACATGCAG GGAGGGACGGCCGGAGGGGTATGGGATTTGTAAGTACGCGAATGGCGCGG TGTATTCGGGAGAGTGGAAGGAGGGCGGGAGGGAGGGGCAGGGCAAGTGT GTCTTTGCAAATGGGGAGATCTATGATGGGGTGTGGGAGAGGGATCACGT GAGTTTGAGGGGCTTGGGCACACTGAGCTTTCAGGATGGTAGAGTACATG AGTTTTCATAGACGAGGGGGAGGGAGGGGAAAAGGGAGGAATGGAGGAAA GCAGGTCTTCCATCATGGACACCTACGTGGCTATTCGATGTGGAGGGAAG GGAGGGAGGGAGGGAAGGCGGGAAGAAGAATTAGGATTCAAAATAGAACG ACGTGTACATCAAATGTCAAGAAAGTATTTTTTGAACTCTTATCCTTGCT TTACAATTATATTTGCTTTTTTCATTTCT
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Coding sequence (CDS) from alignment at chr6:613580..618108+

>NO06G02100.1 ID=NO06G02100.1|Name=NO06G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=4311bp|location=Sequence derived from alignment at chr6:613580..618108+ (Nannochloropsis oceanica)
ATGGACGCCACCACCAGGCGTATCCCGGTGGAAGAGGAGGAGCAGGAGCA
GAAGCAAGAAAACTCTTCGGGCCATGTCATGGTGAAGCAAGCCTCTCTAC
CCTCCTCGTCCTCGTCGAGCATCACACCCTCCTCGCTACTCGCCAGAGGC
GCCTCGACGCGGAGCATACCTTCTTCACGGCCCCGGATTAGCACGTTTGA
CCGGAAGCTCAAGGAGGCAGCACTCGAGCGCTCGGCCGTGGCCCTTCTAG
TCGTCAAGCATGTACACCCAGGAGGGCGGCCGGTGCCGTACAAGCTGGTG
CCGGACTATCGCAAGGAAGACTTGCCCAACCCTTTCTTGGAGGAAATGCT
TCGGGAAGCGTCGGGGAGGCTGGGCGAATGCCTGCCGGAGCGCTACTGTA
GGGATGGCGCTCCTCACGACGCGAACTCGGACACGAGTGCTTCCTCCTTA
TCCTCTCCTGCTGCCGACATTGTCTGTCTGGCGCCGCAGCTCGTGGGGAC
GTTGACGGATTGCTGCTATTTCATTCTTCATTTGGGCGACACTCCGCCAC
CTTCCACAAACCCCTTTGATGACGATCCAGAACTTTACCCACCCGCCTCT
GCTGTCTCGTCCTCCTCCCAAGCCTATCTCGCCGACAGCAATGTTAGCGA
TCGCACACCTCCCACCACTGCACCTTCATTGAGTCCAAGATTAAAGTACA
TGAGTTTACGCGCGCGAAGTCGCCGCGTCTATGGTATATGTCGTCGGGCT
CCCTCCCTACAGTCCAACAGCGTCATCCTCCTCTCTGCCACCCCCTGCTT
CGAGCTCCTCCGCCATCAATTTCTATCCCTCACCTCCACCTACTTCCAAA
ATAAGTGCCAAGATGACGAAGGGGACATGCGGGCCTTTCTCCTTGCCATC
TCGAACCCCACCACAGGCACCCTTCACCGAGAAGTCGCCTCGTTCCAATC
CCGTAGTGTCCCGGTCATGTGGCTTATCAATCTCCTCGGGATCGAACACA
TCCTCGGCTTAGTTAAACTCCTCCTCCTCGAAGGCCGCCTCCTCTTCTTC
TCCTCCAAACCTTACAAGTCCAGCAGCGCCGTCCTCGCCCTCATCTCCCT
GATTCCCGGACTCTATAACCAAGCCCTCTCCAACAACGCAGAGCCCCTCA
CTGCCCTCCACTCCTACCGCTGGCGGAAATATGGCATGCCCTTACAGATA
TTCCACAAAGACAATTACGCCCTCCAACCCCTCCTCGTCCTTAGTGGAGC
CCAAGCATTCTTCCTAAAATATCCTGGTTTCTTAGTGGGGACTTCGAACC
CCTGCATCAGCAAATTGCCGAGCGCGCAACTCGACGCTGTGGTCGACCTG
GACACGTGTGCAATAGACTCGCAACGCTTCTCCTCCCCCTCTTCCTTCCC
TTTCTCTTTAGCTTATGATGTCTCACCGACCAGCACTGCGGGTCTGTGCG
AATATCAGCAGCAGCAGCAGCAGCAGAAGGAGGAGGAGGGCAGGGAGGGA
GGGAGGGAGGAAGGGAGAGAGGGAAGGAGGCCGTGTCGGTCCCCGACATG
GCTGATGGTGGATCTGGCGAGGATAGCATTTGAATATGGTCCAGCTGATG
CAGACTTTTTGGAGGAGGTGCTAGAGGGGTTGCCTACTTCACAGGATAAT
CAAGCACAGCAGCGGCACGTGAAGCAGCAGGAGCAGGGGCAGGAGCAGGA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGCAG
GGTGGAATGGAAGCGATGGATGGATCCGGGCATCATTTCAAAAATATTTC
GAGAATTTTCTGGCTCAGGCCGCCTTGGCCCTGCATAGCACCATCCGGGA
TGGCGCCGCTGCTTCTGTTGCTTCTTTATCCTCTTCCTGGGTGCGGAAAG
CTGTGACTGGATTGCTGCAAGCCAACCCCCGAACAACGTGTGGTTTTGAC
GTCAAGTTGATGGACTATAATAGGGCATGGGTGGGTCAGTGGACGACGAC
TTTAAATTTTAGGATATGGCATGACCATTACCCTCACTCGTGTTTGCCAT
CTGATTCTTTCAGCGGCAGCAATAGCATAAGTAGTAGTAGTAGTAGTAGT
AGCAGTGGTAAAAGTAGCAGTAGCAGTAGTAGTAGCGGTAGCCGTGGTCG
TAAGAAGTCGTTGCCTATGTTGCTGGCGTCCGCGTCGTTTTCGATGTCGG
GAGGAGAAGGAGGAGAAGGGAGAGAAGAAGAAGGGGGAGGGGGAGGGTCG
GATGGGGCGGTAGAGTGTTTTACATACCCAAATGGCGATACTTATCAAGG
TAAGATGCAATCAGGGAAGAGGCAGGGCGTGGGGACATACGTTGAACACG
CCACCGGTAACACTTACGAAGGCGATTGGATGAGAGACATGCGGCATGGT
CATGGCATTCTTACCACGGGAGCGCGTGATTTTTTGTACGATGGAGGGTG
GGTGAGGGATAAGAGGGAGGGGCTGGGATGTTGTGTGATCCGGGGGCGAG
AGACGTATATCGGTGGGTTTGTGGAGAATCGGTACCAGGGGCAGGGGCAA
TTGGTGGAATCGGACGGGAGTGTGTATGAAGGGGAATGGAGGGAGGGAAA
AAGGGAGGGGCTAGGGACGTGGAAGAAGGCGGATGGGGAGGTTTATGTTG
GGGAGTGGAAGGAGGGAGGAAGGGAGGGGGTGGGGACGTGCCAATATTTG
GACGGTTCGAAATATTCGGGGGAATGGAAACAAGGAGGTCGGTGCGGGGA
AGGAACGTTTGTTGCTGCTCCTGCTTTAGCAATGGCAGCAGCAGCCGGAG
CAGCACCAGACAGAGAAGGAGGAGGAGGAGAAGGAGGTGGCGGCGGAGGG
ATGGATGCTGCTACTGCTTCCACTACCGGTCTTGCTGCTGTCACAGAAGA
TTTTTTTGAAGGTCAGTGGGTAGCGGACCAGAGGCATGGATGGGGTGTGC
AGAAGTTTGTTAATGGTGACATCAAAGAGGGGGAATGGCACCAAGATAAG
CCACAGGACGGGGAATGGAAGATAACGTATGCGTCGGGCGATCAATTTGT
GGGGGAATGCAAGGCGGGGAAGCCGCATGGGCTTGGGACGTGTAAATATT
CGAATGGCGACGTTTATACAGGGGAATGGGAGGGGGGTTTGAGGGCGGGG
GAGGGTGTGTGTGTCTTTGCCCGGGCATCGGGGAAGGAGAGGATTGAAGG
ACGCTGGTGGGGGGATCGTCCGGTGGTAGGTGATTTTGATTGTACTCCAG
CAATTTGTCATGAGGAAGGGGAGGGAAGGGTGGAGGGAGGGAAAGACGGC
CGCCGTCCGAATACACAACGACGGTTGTTGATGGCCGTGAAGGGGCCCCC
TTCTCCGCGAAAGGCGCTTGCAATGCCAGCGACGTCGTTGGAGGAAATTG
CGCGAATGTCGGGCAAGGACTGTGTGGTTGTGTATCCTTGCTCCGGGGAT
ACCTATGTTGGTGAAATGAAGGCGGGAAAAAGACATGGCGTAGGGGTGTA
CGTGGAAAAGAAATCCGGGAATAAGTATGAAGGAGGGTTTGAGGAGGATC
TCAGGCATGGACACGGGGTGTTGTCGTCGGGGATGAAGGATTTTCTGTAC
GATGGGGAGTGGGTGCGGGGCCGAAGAACGGGGAAGGGCACATGTGTGGT
GAAGGGAAGGGAGAGTTACACGGGTGAGTGGTTGGATGATGTGTACCACG
GCAAGGGAAGAGTTGTGGATGCTGCGGGTGACACGTACGAGGGGGAGTAT
ATGAAGGGACGGAGGGAGGGCGCCGGGACGTTGACGAGTACGGATGGGGA
GGTGTACGTAGGTGAATGGAAGGAGGGAAGGAGGGAGGGGGTGGGTCAGT
GTCAGTATGCGAATGGGGCGTGTTATTCCGGGGATTGGAGGAGGGATAGG
TGGAATGGGGAAGGGGTATTTGTGAGTCCTGAGGGGGAGAAGCATGAAGG
ATTGTGGAGTGAGGGAAGGAGGCAGGGGTGGGGGCTTTGGACGTCGACCA
CGGGGGATGTGATCGAGGGAGAGTGGTTGATGGATGAACCCAAGGATGGG
GAGTGGAAAATAACGTACAGCAATGGCGATCAGTTCGTGGGAACATGCAG
GGAGGGACGGCCGGAGGGGTATGGGATTTGTAAGTACGCGAATGGCGCGG
TGTATTCGGGAGAGTGGAAGGAGGGCGGGAGGGAGGGGCAGGGCAAGTGT
GTCTTTGCAAATGGGGAGATCTATGATGGGGTGTGGGAGAGGGATCACGT
GAGTTTGAGGGGCTTGGGCACACTGAGCTTTCAGGATGGTAGAGTACATG
AGTTTTCATAG
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Synonyms
Publications