NO06G02080.1, NO06G02080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02080.1
Unique NameNO06G02080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr6:610288..611280 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:610288..611280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02080.1 vs.
Match: EWM26232.1 (Chromatin associated protein KTI12 [Nannochloropsis gaditana])

HSP 1 Score: 232.6 bits (592), Expect = 1.700e-57
Identity = 152/335 (45.37%), Postives = 207/335 (61.79%), Query Frame = 0 
Query:    1 MCGLPGAGKSYWASRLHSSAISRKGGETRFDDDVRHVDFDAVEAGLLREGSGKDNSNRIDTWHSARVMALEQAQDILLEE--------VAERHRVVVVLDDNMYYASMRREAYQLAARYGVGYGCLHVATPLDVALVQNKSRPAGRSVTEEVIRRMHTKLQVPDPNTRSWEANTVAIGNITTLETQDNE--AETLRKIWTVIERGYKTPATIVEVSSAEEEVAKEEARQRTRGSLLHATELMLRKIIGTAMQLVAAGDGLFNVKPSSFGPRFSAAKAAVMREVGKGNAQSFTQDWILQQADAKNILVGKLFIAMR-EKGREEETAALLELERQTL 325
            MCGLP AGKSYW  RL  SA SR  G+   + +V+ ++FDA+EA L  E  G    + I  WH AR  AL QA+ IL +E        +++  R +++LDDNMYYASMRR+ Y +AAR G GYGC+HV   ++ AL QN  RP  + V E+VIRRM+ +L+ P+ +TR WE NT+ I      E Q+ E  A TL KIW+V+ERG++ PA I + S  EEE  KE  RQ+ R S++H  EL LR++IGTAM L+A  D   +   SS G  F  AK  VM+   + +A   TQD  L++ D + +L   LF A+R E G +E+T +  ELE++TL
Sbjct:   11 MCGLPAAGKSYWGCRLQDSASSRYPGK---ECEVQRIEFDAIEARLREEDEGL---HPIAVWHRARSKALAQAESILHQERGSSTPVGLSKPSRRILILDDNMYYASMRRKVYLMAARNGAGYGCVHVDISVEDALSQNMKRPLRQRVDEKVIRRMNARLEAPNKSTRRWETNTLVI------ERQEEEVGARTLDKIWSVVERGWEAPAFIPK-SCFEEEAKKERDRQKVRESVVHTAELALRRVIGTAM-LLAGTDVRLSGTLSSLGRGFQVAKTEVMKRFREKSAFFVTQD-TLEKRDVE-LLTKSLFAAIRGEFGNDEKTWS--ELEKKTL 327
The following BLAST results are available for this feature:
BLAST of NO06G02080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26232.11.700e-5745.37Chromatin associated protein KTI12 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02080NO06G02080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02080.1NO06G02080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02080.1.cds1NO06G02080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02080.1 ID=NO06G02080.1|Name=NO06G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGTGCGGCCTTCCGGGAGCCGGCAAAAGCTATTGGGCAAGTCGACTCCA
CTCCTCAGCAATATCACGGAAGGGAGGTGAGACGAGATTCGACGACGATG
TGCGGCACGTCGATTTTGACGCCGTGGAGGCTGGCCTTCTTCGAGAAGGC
AGTGGTAAGGATAACAGCAATCGAATTGACACGTGGCATAGTGCCCGCGT
CATGGCCTTGGAGCAGGCCCAGGATATTTTGCTGGAGGAGGTTGCGGAGA
GGCATCGTGTCGTCGTTGTGCTGGACGACAACATGTACTACGCAAGCATG
CGTCGAGAAGCTTACCAGCTCGCCGCCCGGTATGGGGTAGGCTATGGCTG
CTTGCATGTTGCGACGCCCTTGGACGTGGCATTGGTTCAAAATAAATCAC
GACCAGCAGGGCGATCTGTTACTGAGGAGGTCATTCGGCGGATGCACACC
AAGCTGCAGGTCCCCGACCCGAATACACGCAGCTGGGAGGCCAATACAGT
CGCGATTGGGAATATTACAACATTAGAAACACAAGACAATGAAGCAGAAA
CGCTGCGTAAAATCTGGACTGTGATAGAGCGTGGATACAAGACACCGGCT
ACTATCGTTGAAGTCTCCTCGGCGGAAGAAGAGGTGGCCAAGGAGGAAGC
CCGACAACGGACACGCGGAAGTCTCTTACATGCCACAGAGTTGATGCTGC
GCAAAATTATAGGCACGGCAATGCAGCTAGTAGCCGCTGGGGATGGTTTG
TTCAATGTGAAACCTTCTAGTTTCGGACCTCGCTTTAGTGCTGCAAAGGC
AGCAGTGATGAGGGAAGTGGGAAAGGGGAACGCCCAATCATTCACGCAGG
ACTGGATTTTACAGCAGGCCGATGCAAAGAATATCCTGGTGGGTAAATTA
TTCATTGCGATGCGTGAAAAGGGGAGGGAAGAGGAGACCGCGGCATTACT
AGAATTAGAAAGACAGACGCTGGCAAAGCTTGTAAACATGTAG
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protein sequence of NO06G02080.1

>NO06G02080.1-protein ID=NO06G02080.1-protein|Name=NO06G02080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MCGLPGAGKSYWASRLHSSAISRKGGETRFDDDVRHVDFDAVEAGLLREG
SGKDNSNRIDTWHSARVMALEQAQDILLEEVAERHRVVVVLDDNMYYASM
RREAYQLAARYGVGYGCLHVATPLDVALVQNKSRPAGRSVTEEVIRRMHT
KLQVPDPNTRSWEANTVAIGNITTLETQDNEAETLRKIWTVIERGYKTPA
TIVEVSSAEEEVAKEEARQRTRGSLLHATELMLRKIIGTAMQLVAAGDGL
FNVKPSSFGPRFSAAKAAVMREVGKGNAQSFTQDWILQQADAKNILVGKL
FIAMREKGREEETAALLELERQTLAKLVNM*
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mRNA from alignment at chr6:610288..611280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02080.1 ID=NO06G02080.1|Name=NO06G02080.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at chr6:610288..611280+ (Nannochloropsis oceanica)
ATGTGCGGCCTTCCGGGAGCCGGCAAAAGCTATTGGGCAAGTCGACTCCA
CTCCTCAGCAATATCACGGAAGGGAGGTGAGACGAGATTCGACGACGATG
TGCGGCACGTCGATTTTGACGCCGTGGAGGCTGGCCTTCTTCGAGAAGGC
AGTGGTAAGGATAACAGCAATCGAATTGACACGTGGCATAGTGCCCGCGT
CATGGCCTTGGAGCAGGCCCAGGATATTTTGCTGGAGGAGGTTGCGGAGA
GGCATCGTGTCGTCGTTGTGCTGGACGACAACATGTACTACGCAAGCATG
CGTCGAGAAGCTTACCAGCTCGCCGCCCGGTATGGGGTAGGCTATGGCTG
CTTGCATGTTGCGACGCCCTTGGACGTGGCATTGGTTCAAAATAAATCAC
GACCAGCAGGGCGATCTGTTACTGAGGAGGTCATTCGGCGGATGCACACC
AAGCTGCAGGTCCCCGACCCGAATACACGCAGCTGGGAGGCCAATACAGT
CGCGATTGGGAATATTACAACATTAGAAACACAAGACAATGAAGCAGAAA
CGCTGCGTAAAATCTGGACTGTGATAGAGCGTGGATACAAGACACCGGCT
ACTATCGTTGAAGTCTCCTCGGCGGAAGAAGAGGTGGCCAAGGAGGAAGC
CCGACAACGGACACGCGGAAGTCTCTTACATGCCACAGAGTTGATGCTGC
GCAAAATTATAGGCACGGCAATGCAGCTAGTAGCCGCTGGGGATGGTTTG
TTCAATGTGAAACCTTCTAGTTTCGGACCTCGCTTTAGTGCTGCAAAGGC
AGCAGTGATGAGGGAAGTGGGAAAGGGGAACGCCCAATCATTCACGCAGG
ACTGGATTTTACAGCAGGCCGATGCAAAGAATATCCTGGTGGGTAAATTA
TTCATTGCGATGCGTGAAAAGGGGAGGGAAGAGGAGACCGCGGCATTACT
AGAATTAGAAAGACAGACGCTGGCAAAGCTTGTAAACATGTAG
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Coding sequence (CDS) from alignment at chr6:610288..611280+

>NO06G02080.1 ID=NO06G02080.1|Name=NO06G02080.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr6:610288..611280+ (Nannochloropsis oceanica)
ATGTGCGGCCTTCCGGGAGCCGGCAAAAGCTATTGGGCAAGTCGACTCCA
CTCCTCAGCAATATCACGGAAGGGAGGTGAGACGAGATTCGACGACGATG
TGCGGCACGTCGATTTTGACGCCGTGGAGGCTGGCCTTCTTCGAGAAGGC
AGTGGTAAGGATAACAGCAATCGAATTGACACGTGGCATAGTGCCCGCGT
CATGGCCTTGGAGCAGGCCCAGGATATTTTGCTGGAGGAGGTTGCGGAGA
GGCATCGTGTCGTCGTTGTGCTGGACGACAACATGTACTACGCAAGCATG
CGTCGAGAAGCTTACCAGCTCGCCGCCCGGTATGGGGTAGGCTATGGCTG
CTTGCATGTTGCGACGCCCTTGGACGTGGCATTGGTTCAAAATAAATCAC
GACCAGCAGGGCGATCTGTTACTGAGGAGGTCATTCGGCGGATGCACACC
AAGCTGCAGGTCCCCGACCCGAATACACGCAGCTGGGAGGCCAATACAGT
CGCGATTGGGAATATTACAACATTAGAAACACAAGACAATGAAGCAGAAA
CGCTGCGTAAAATCTGGACTGTGATAGAGCGTGGATACAAGACACCGGCT
ACTATCGTTGAAGTCTCCTCGGCGGAAGAAGAGGTGGCCAAGGAGGAAGC
CCGACAACGGACACGCGGAAGTCTCTTACATGCCACAGAGTTGATGCTGC
GCAAAATTATAGGCACGGCAATGCAGCTAGTAGCCGCTGGGGATGGTTTG
TTCAATGTGAAACCTTCTAGTTTCGGACCTCGCTTTAGTGCTGCAAAGGC
AGCAGTGATGAGGGAAGTGGGAAAGGGGAACGCCCAATCATTCACGCAGG
ACTGGATTTTACAGCAGGCCGATGCAAAGAATATCCTGGTGGGTAAATTA
TTCATTGCGATGCGTGAAAAGGGGAGGGAAGAGGAGACCGCGGCATTACT
AGAATTAGAAAGACAGACGCTGGCAAAGCTTGTAAACATGTAG
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Synonyms
Publications