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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:606255..608052 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02070.1 vs.
Match: EWM26207.1 (ribosome maturation factor rimp [Nannochloropsis gaditana]) HSP 1 Score: 649.8 bits (1675), Expect = 6.200e-183 Identity = 327/455 (71.87%), Postives = 366/455 (80.44%), Query Frame = 0
Query: 1 MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCACPTCTRNTGRVGEAIAHPGARRRAEALVLMARGRRGRGGGGWQRRRRQDANPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTVEEIENDNLIDPAAAYAAAEAATAAAAAAQASGEGAPQENEPDWDNIPEYGGEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGE--DCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPGTIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEEEEE 454
MVGWS+CL LTLGLASS AFVP+ I P L D ATT HPH C CP + G V + PGARRR EALVLMARGRRGRGGGGWQRRRRQDANP+EFDKYGFPIPP+KPAKELEEEHR+W+ESIEPPEGFPEFDA+KEGF+ EE+END L+DPA A AE A AS EGA QENEPDWDNIPEYGGEFLGMDDPLDAPWR E++IR AV EAG+ YDVTWHLHHVNVDITR + + GE + GSLSSDEIV+VTRA+EEAL PHD L+ILQRFHLCVGTPGAKD+LTTEREFQAFRG+EV V + +PINE+ + NVRVGRL+ER P+ TILNVKGKNVTI T M+ E+RLP AMHE DDFEVM+EGWANLFVDGKVP T+ VEY+MPGL TLGKGV+MVEPEYYVPP++PDEDGEE +GEEY EE+E
Sbjct: 32 MVGWSNCLTLTLGLASSVHAFVPAAHLKAICGNPVLHKDYATTTHPHVCTCPARAHSPGNVDGLQSTPGARRRVEALVLMARGRRGRGGGGWQRRRRQDANPIEFDKYGFPIPPQKPAKELEEEHREWMESIEPPEGFPEFDAAKEGFSPEEMENDPLLDPAVAVTTAETGAATVIDVTASEEGAGQENEPDWDNIPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMEEGWANLFVDGKVPSTVSVEYEMPGLTTLGKGVKMVEPEYYVPPSLPDEDGEE--GEGEEYVGGEEDE 484
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02070.1 ID=NO06G02070.1|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp TGCGATGGCGAGGCGAGTGGCATTGCTTCGTCTTGTTGCACCAAGCCTCC GCACAACACCCGGCAAACACTCGACCTCGCAGAAATGGCGTGCATGAAGA GCTTTGAACAGTGGCGAGGAGACTACCTTGGCCCTGGCCGTATTTGCTTT TTCTTGTTATCTTCACCATCTTTATCTCATTCATCCTATCTCTCCCCCTA CAACCACATCATAGGGCAGCCCCCATCCCAGAAGTAGCCAAACATGGTCG GCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGT GCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCT CACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCCTGTCCTA CCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCATCCCGGG GCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGG ACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAG TAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAA GAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGCCTCCGGA GGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGA TAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAG GCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCC GCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAAT TTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAG GAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGT GACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGAGAGGATT GTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGAT GAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGA TAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGG GGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGC TTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCA GAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATAT TGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGATCCATGAG ATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGA CGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGAACGATAC AGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGG ATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGG GGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAGGAGGAGG AGTAGAGGGGATGAGGGAGAGAGGGAGGAAAAGGGAGGGACGGTATAAAT ATTCAATCAAACAAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAA TTGCAGCAATAAAAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAG AAAATGGAACTAAGTTTGATTGAGCGACAGACAATAGTGTGAGAGGAA back to topprotein sequence of NO06G02070.1 >NO06G02070.1-protein ID=NO06G02070.1-protein|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCA CPTCTRNTGRVGEAIAHPGARRRAEALVLMARGRRGRGGGGWQRRRRQDA NPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTV EEIENDNLIDPAAAYAAAEAATAAAAAAQASGEGAPQENEPDWDNIPEYG GEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRG EDCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVG TPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQ TILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPG TIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEE EEE* back to topmRNA from alignment at chr6:606255..608052- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02070.1 ID=NO06G02070.1|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at chr6:606255..608052- (Nannochloropsis oceanica) TGCGATGGCGAGGCGAGTGGCATTGCTTCGTCTTGTTGCACCAAGCCTCC
GCACAACACCCGGCAAACACTCGACCTCGCAGAAATGGCGTGCATGAAGA
GCTTTGAACAGTGGCGAGGAGACTACCTTGGCCCTGGCCGTATTTGCTTT
TTCTTGTTATCTTCACCATCTTTATCTCATTCATCCTATCTCTCCCCCTA
CAACCACATCATAGGGCAGCCCCCATCCCAGAAGTAGCCAAACATGGTCG
GCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGT
GCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCT
CACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCCTGTCCTA
CCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCATCCCGGG
GCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGG
ACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAG
TAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAA
GAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGCCTCCGGA
GGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGA
TAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAG
GCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCC
GCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAAT
TTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAG
GAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGT
GACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGAGAGGATT
GTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGAT
GAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGA
TAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGG
GGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGC
TTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCA
GAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATAT
TGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGATCCATGAG
ATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGA
CGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGAACGATAC
AGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGG
ATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGG
GGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAGGAGGAGG
AGTAGAGGGGATGAGGGAGAGAGGGAGGAAAAGGGAGGGACGGTATAAAT
ATTCAATCAAACAAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAA
TTGCAGCAATAAAAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAG
AAAATGGAACTAAGTTTGATTGAGCGACAGACAATAGTGTGAGAGGAA back to topCoding sequence (CDS) from alignment at chr6:606255..608052- >NO06G02070.1 ID=NO06G02070.1|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr6:606255..608052- (Nannochloropsis oceanica) ATGGTCGGCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAG CGCTCGTGCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTC CTGCCCTCACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCC TGTCCTACCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCA TCCCGGGGCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCC GGCGAGGACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCC AACCCAGTAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACC CGCCAAAGAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGC CTCCGGAGGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTG GAGGAGATAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGC GGCGGAGGCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGG GGGCTCCGCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGT GGGGAATTTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCA AGGGGAGGAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTT ATGACGTGACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGA GAGGATTGTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTC GTCGGATGAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCC CTCATGATAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGC ACTCCGGGGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTT TAGAGGCTTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACAC AAAGTCAGAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAG ACAATATTGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGAT CCATGAGATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGG TGATGGACGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGA ACGATACAGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGG GGTGAGGATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACG AGGACGGGGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAG GAGGAGGAGTAG back to top
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