NO06G02070.1, NO06G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02070.1
Unique NameNO06G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1798
Alignment locationchr6:606255..608052 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:606255..608052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02070.1 vs.
Match: EWM26207.1 (ribosome maturation factor rimp [Nannochloropsis gaditana])

HSP 1 Score: 649.8 bits (1675), Expect = 6.200e-183
Identity = 327/455 (71.87%), Postives = 366/455 (80.44%), Query Frame = 0
Query:    1 MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCACPTCTRNTGRVGEAIAHPGARRRAEALVLMARGRRGRGGGGWQRRRRQDANPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTVEEIENDNLIDPAAAYAAAEAATAAAAAAQASGEGAPQENEPDWDNIPEYGGEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRGE--DCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVGTPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQTILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPGTIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEEEEE 454
            MVGWS+CL LTLGLASS  AFVP+     I   P L  D ATT HPH C CP    + G V    + PGARRR EALVLMARGRRGRGGGGWQRRRRQDANP+EFDKYGFPIPP+KPAKELEEEHR+W+ESIEPPEGFPEFDA+KEGF+ EE+END L+DPA A   AE   A      AS EGA QENEPDWDNIPEYGGEFLGMDDPLDAPWR   E++IR AV EAG+  YDVTWHLHHVNVDITR +  +    GE   + GSLSSDEIV+VTRA+EEAL PHD  L+ILQRFHLCVGTPGAKD+LTTEREFQAFRG+EV V + +PINE+ + NVRVGRL+ER P+ TILNVKGKNVTI T M+ E+RLP AMHE DDFEVM+EGWANLFVDGKVP T+ VEY+MPGL TLGKGV+MVEPEYYVPP++PDEDGEE   +GEEY   EE+E
Sbjct:   32 MVGWSNCLTLTLGLASSVHAFVPAAHLKAICGNPVLHKDYATTTHPHVCTCPARAHSPGNVDGLQSTPGARRRVEALVLMARGRRGRGGGGWQRRRRQDANPIEFDKYGFPIPPQKPAKELEEEHREWMESIEPPEGFPEFDAAKEGFSPEEMENDPLLDPAVAVTTAETGAATVIDVTASEEGAGQENEPDWDNIPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADDFEVMEEGWANLFVDGKVPSTVSVEYEMPGLTTLGKGVKMVEPEYYVPPSLPDEDGEE--GEGEEYVGGEEDE 484          
The following BLAST results are available for this feature:
BLAST of NO06G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26207.16.200e-18371.87ribosome maturation factor rimp [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02070NO06G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02070.1NO06G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02070.1.cds1NO06G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02070.1 ID=NO06G02070.1|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp
TGCGATGGCGAGGCGAGTGGCATTGCTTCGTCTTGTTGCACCAAGCCTCC
GCACAACACCCGGCAAACACTCGACCTCGCAGAAATGGCGTGCATGAAGA
GCTTTGAACAGTGGCGAGGAGACTACCTTGGCCCTGGCCGTATTTGCTTT
TTCTTGTTATCTTCACCATCTTTATCTCATTCATCCTATCTCTCCCCCTA
CAACCACATCATAGGGCAGCCCCCATCCCAGAAGTAGCCAAACATGGTCG
GCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGT
GCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCT
CACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCCTGTCCTA
CCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCATCCCGGG
GCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGG
ACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAG
TAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAA
GAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGCCTCCGGA
GGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGA
TAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAG
GCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCC
GCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAAT
TTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAG
GAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGT
GACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGAGAGGATT
GTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGAT
GAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGA
TAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGG
GGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGC
TTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCA
GAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATAT
TGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGATCCATGAG
ATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGA
CGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGAACGATAC
AGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGG
ATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGG
GGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAGGAGGAGG
AGTAGAGGGGATGAGGGAGAGAGGGAGGAAAAGGGAGGGACGGTATAAAT
ATTCAATCAAACAAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAA
TTGCAGCAATAAAAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAG
AAAATGGAACTAAGTTTGATTGAGCGACAGACAATAGTGTGAGAGGAA
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protein sequence of NO06G02070.1

>NO06G02070.1-protein ID=NO06G02070.1-protein|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MVGWSHCLALTLGLASSARAFVPSLPAGGIGVRPALTTDLATTPHPHHCA
CPTCTRNTGRVGEAIAHPGARRRAEALVLMARGRRGRGGGGWQRRRRQDA
NPVEFDKYGFPIPPKKPAKELEEEHRKWLESIEPPEGFPEFDASKEGFTV
EEIENDNLIDPAAAYAAAEAATAAAAAAQASGEGAPQENEPDWDNIPEYG
GEFLGMDDPLDAPWRRQGEELIRAAVVEAGFDVYDVTWHLHHVNVDITRG
EDCHEGGEAGMERGSLSSDEIVDVTRAIEEALFPHDRQLKILQRFHLCVG
TPGAKDILTTEREFQAFRGFEVNVLLKSPINETQSQNVRVGRLMERGPVQ
TILNVKGKNVTILTDMIHEMRLPEAMHEIDDFEVMDEGWANLFVDGKVPG
TIQVEYDMPGLVTLGKGVRMVEPEYYVPPAIPDEDGEEMMDDGEEYSLEE
EEE*
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mRNA from alignment at chr6:606255..608052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02070.1 ID=NO06G02070.1|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at chr6:606255..608052- (Nannochloropsis oceanica)
TGCGATGGCGAGGCGAGTGGCATTGCTTCGTCTTGTTGCACCAAGCCTCC GCACAACACCCGGCAAACACTCGACCTCGCAGAAATGGCGTGCATGAAGA GCTTTGAACAGTGGCGAGGAGACTACCTTGGCCCTGGCCGTATTTGCTTT TTCTTGTTATCTTCACCATCTTTATCTCATTCATCCTATCTCTCCCCCTA CAACCACATCATAGGGCAGCCCCCATCCCAGAAGTAGCCAAACATGGTCG GCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAGCGCTCGT GCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTCCTGCCCT CACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCCTGTCCTA CCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCATCCCGGG GCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCCGGCGAGG ACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCCAACCCAG TAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACCCGCCAAA GAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGCCTCCGGA GGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTGGAGGAGA TAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGCGGCGGAG GCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGGGGGCTCC GCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGTGGGGAAT TTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCAAGGGGAG GAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTTATGACGT GACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGAGAGGATT GTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTCGTCGGAT GAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCCCTCATGA TAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGCACTCCGG GGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTTTAGAGGC TTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACACAAAGTCA GAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAGACAATAT TGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGATCCATGAG ATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGGTGATGGA CGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGAACGATAC AGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGGGGTGAGG ATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACGAGGACGG GGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAGGAGGAGG AGTAGAGGGGATGAGGGAGAGAGGGAGGAAAAGGGAGGGACGGTATAAAT ATTCAATCAAACAAAGAGAGCGGCAGCAACAGAAGCAGCAGCTGCAGCAA TTGCAGCAATAAAAACAACGAAGGAGGACCAAGAGCTTAGGAAAAAGTAG AAAATGGAACTAAGTTTGATTGAGCGACAGACAATAGTGTGAGAGGAA
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Coding sequence (CDS) from alignment at chr6:606255..608052-

>NO06G02070.1 ID=NO06G02070.1|Name=NO06G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at chr6:606255..608052- (Nannochloropsis oceanica)
ATGGTCGGCTGGAGCCATTGCTTGGCACTGACGCTGGGCCTGGCCTCGAG
CGCTCGTGCGTTTGTGCCGTCTCTACCCGCAGGTGGCATCGGCGTACGTC
CTGCCCTCACTACCGACCTGGCCACGACCCCCCATCCGCATCACTGCGCC
TGTCCTACCTGTACACGGAACACGGGAAGGGTAGGAGAAGCCATCGCCCA
TCCCGGGGCACGGAGAAGGGCCGAGGCCCTGGTGCTGATGGCGCGGGGCC
GGCGAGGACGGGGTGGCGGAGGGTGGCAACGACGCCGGCGGCAGGATGCC
AACCCAGTAGAGTTTGACAAGTACGGTTTCCCCATTCCCCCCAAGAAACC
CGCCAAAGAATTGGAAGAGGAGCATCGGAAATGGCTAGAGTCAATTGAGC
CTCCGGAGGGCTTTCCAGAATTTGACGCGAGCAAAGAGGGGTTCACGGTG
GAGGAGATAGAGAACGACAATTTGATTGATCCCGCAGCGGCTTACGCAGC
GGCGGAGGCAGCAACAGCAGCAGCAGCGGCGGCACAGGCGAGTGGAGAGG
GGGCTCCGCAGGAGAATGAGCCTGATTGGGATAATATTCCGGAGTATGGT
GGGGAATTTCTGGGGATGGATGATCCGTTGGATGCGCCGTGGCGGAGGCA
AGGGGAGGAGTTGATTAGGGCGGCGGTGGTTGAGGCGGGCTTTGATGTTT
ATGACGTGACTTGGCATTTGCATCATGTAAATGTGGATATTACAAGGGGA
GAGGATTGTCATGAGGGAGGGGAAGCAGGGATGGAAAGAGGGTCGTTGTC
GTCGGATGAGATTGTGGACGTGACCAGAGCGATTGAAGAGGCATTGTTCC
CTCATGATAGGCAGCTGAAGATTCTGCAGCGATTCCATTTGTGTGTGGGC
ACTCCGGGGGCAAAAGATATATTGACGACGGAAAGAGAATTTCAGGCGTT
TAGAGGCTTTGAAGTGAATGTGCTGTTGAAGAGTCCGATTAATGAGACAC
AAAGTCAGAATGTGCGTGTTGGGCGACTGATGGAACGAGGGCCTGTGCAG
ACAATATTGAATGTAAAGGGTAAAAATGTCACCATCCTCACGGATATGAT
CCATGAGATGCGCTTGCCGGAAGCAATGCACGAAATCGACGATTTCGAGG
TGATGGACGAGGGTTGGGCGAATTTATTTGTGGATGGGAAGGTACCCGGA
ACGATACAGGTTGAGTATGACATGCCGGGCTTGGTGACCCTGGGTAAGGG
GGTGAGGATGGTGGAGCCTGAGTATTATGTGCCGCCGGCTATTCCGGACG
AGGACGGGGAGGAGATGATGGATGATGGGGAGGAATACAGTTTAGAGGAG
GAGGAGGAGTAG
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Synonyms
Publications