NO06G02060.1, NO06G02060.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02060.1
Unique NameNO06G02060.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1536
Alignment locationchr6:604719..606254 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:604719..606254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02060.1 vs.
Match: EWM26245.1 (proteasome alpha5 isoform a [Nannochloropsis gaditana])

HSP 1 Score: 417.5 bits (1072), Expect = 4.400e-113
Identity = 208/317 (65.62%), Postives = 248/317 (78.23%), Query Frame = 0 
Query:   10 TGPPCCVFLLVALLTICLISPLPTVHAAVEGASTGGRRVVEVYHPFPFTPEGLIRQLTHAQQAVNKGSLSIALAAKDGVVLIGERRDLSPLVVGPTPKIGRLAQHVAYVMAGLVPDGRYLVRRGRALAQKHWFEYGEEVGLPALLMELSKVVTSAHYRAPREGKTGGNKGEKSSSFFEEIRSRPSVDPIGDAEAEVRKEGLPARHFGVGFLFAGPEVECEAPALLEPLVEGGREGEEMRKD---------GVYPPWVVYEMGPSGLFVRWSARAIGEGGEQAEALLEARYRPDMSLEACKRLAVQVCDTVLAASSPS 318
            T PPC +  +V LL    ++ +  VHAA+E  + GGRR+VEVYHPFP+TPEGLIRQLTHAQQAVNKGSL++AL AKDGVVL+G RR+LSPL+VGPTPKIG++ QH+AYVMAGLVPDGRY+VRRGR L+Q+HWF YGEEVGLP LLM+LSKV+TSAHYR P EG  G  KG   +SFFEEIR +PSVDPIGDAEAE++KEGLPAR+FGVGFLFAGP     AP  ++ +  G         D           YPPW VYEMGPSGLFVRWSARAIGE G++AEALLE+RYRP ++LE C+RLA+ +CD+V+  SS S
Sbjct:   49 TNPPCLLLAIVVLL----LNFVCAVHAALESGNNGGRRLVEVYHPFPYTPEGLIRQLTHAQQAVNKGSLAMALVAKDGVVLVGSRRNLSPLLVGPTPKIGQMDQHIAYVMAGLVPDGRYVVRRGRLLSQQHWFVYGEEVGLPGLLMDLSKVLTSAHYRLPPEGPLGEKKG---ASFFEEIRPKPSVDPIGDAEAELKKEGLPARYFGVGFLFAGPLTASRAPTPVDEMNGGDNPASSADVDTTRPTEEASSTYPPWAVYEMGPSGLFVRWSARAIGERGDRAEALLESRYRPGLTLEECQRLAIHICDSVMEDSSSS 358
The following BLAST results are available for this feature:
BLAST of NO06G02060.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26245.14.400e-11365.62proteasome alpha5 isoform a [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02060NO06G02060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02060.1NO06G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02060.1.cds1NO06G02060.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02060.1 ID=NO06G02060.1|Name=NO06G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
AGGAAGAGCCAGACGACGGTAAAGGCAAGGACAAGGGGCCGAGGGCAAGC
CAAGGCCTCCTTGTCAACCTCGACCTCCCCGCTTTTCTACCCCTCGGATG
GTGATGCGGGGTTGTAGTCCGCCAACTGGGCCACCATGCTGTGTCTTCCT
TCTCGTCGCCCTCCTCACCATTTGCCTAATCTCTCCTCTCCCCACCGTCC
ACGCTGCCGTCGAAGGGGCGAGCACAGGCGGTCGTCGAGTTGTGGAAGTC
TACCACCCTTTCCCCTTCACGCCCGAAGGCCTCATCCGCCAGCTGACCCA
TGCCCAGCAAGCCGTCAACAAAGGTAGCCTCTCCATTGCTTTGGCAGCGA
AAGACGGTGTCGTCCTTATTGGGGAACGCCGGGATTTATCTCCACTCGTC
GTGGGTCCCACGCCTAAGATTGGGAGATTAGCTCAGCATGTGGCATACGT
AATGGCAGGCCTCGTGCCGGATGGCCGTTATCTGGTGCGACGTGGACGGG
CCTTGGCGCAAAAACACTGGTTTGAATACGGAGAGGAAGTGGGATTACCT
GCTTTGTTAATGGAGCTGAGCAAAGTCGTGACTTCGGCACATTATCGAGC
CCCGCGCGAGGGGAAGACTGGAGGCAACAAGGGAGAGAAGAGTAGTAGTT
TTTTTGAGGAAATTCGGTCGAGGCCATCTGTGGACCCCATAGGGGATGCT
GAAGCCGAGGTTCGGAAGGAGGGACTGCCTGCGAGACATTTCGGGGTTGG
GTTTTTGTTTGCGGGGCCGGAGGTCGAGTGTGAGGCGCCGGCGCTGTTAG
AGCCTCTTGTTGAAGGAGGGAGGGAGGGCGAGGAAATGAGGAAGGACGGG
GTCTACCCACCATGGGTGGTATATGAAATGGGACCTTCGGGGCTATTCGT
CCGGTGGTCGGCCAGGGCGATTGGGGAGGGAGGGGAACAGGCGGAGGCTT
TGTTGGAAGCGAGATATCGACCGGATATGAGCTTAGAGGCGTGTAAACGG
CTTGCGGTTCAAGTGTGTGACACGGTGTTGGCCGCCTCCTCTCCCTCTGC
TCCGCTTCCTTCCTCCTTCACGGCGAGGCAGGAGGAGACAATAGAGAATT
TGGAGATGGCGTGTTTAACGAGGGATGGAAATGGCCGGCCTTTCTTGAAA
CGGTTGTCAGATGAGGAGCTGAGGCAGTTACGGGGAAGGGTCAGTGAGAC
GATGGGGTTGGTGGAAGCCACCACCACCACCACATCCTCCTCCTCTTAAT
TATCCTCTATATACTCCTCCACCTTCTCGTCCTACTCCTTCCCCCCTCAC
CATCTGGTTGATGATTCACCATGTAAATAGTCTTCGAGATGCAGGGATAA
AGGTAGCACTGACAAATGCCTTGAGAAGCATCCGTTAAATACAAATTACC
ATCAATATAAATGCAAAATTAAGATGAACGAGCCAGTAAAATTCATTCTG
ACCCACACCCGCCCAGCCTCTAAAATGTCACCGCGGAAGATAAAGTAATG
GTGAAGAAATGAAACAGAAGCACATCACTCGTGACT
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protein sequence of NO06G02060.1

>NO06G02060.1-protein ID=NO06G02060.1-protein|Name=NO06G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MVMRGCSPPTGPPCCVFLLVALLTICLISPLPTVHAAVEGASTGGRRVVE
VYHPFPFTPEGLIRQLTHAQQAVNKGSLSIALAAKDGVVLIGERRDLSPL
VVGPTPKIGRLAQHVAYVMAGLVPDGRYLVRRGRALAQKHWFEYGEEVGL
PALLMELSKVVTSAHYRAPREGKTGGNKGEKSSSFFEEIRSRPSVDPIGD
AEAEVRKEGLPARHFGVGFLFAGPEVECEAPALLEPLVEGGREGEEMRKD
GVYPPWVVYEMGPSGLFVRWSARAIGEGGEQAEALLEARYRPDMSLEACK
RLAVQVCDTVLAASSPSAPLPSSFTARQEETIENLEMACLTRDGNGRPFL
KRLSDEELRQLRGRVSETMGLVEATTTTTSSSS*
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mRNA from alignment at chr6:604719..606254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02060.1 ID=NO06G02060.1|Name=NO06G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp|location=Sequence derived from alignment at chr6:604719..606254+ (Nannochloropsis oceanica)
AGGAAGAGCCAGACGACGGTAAAGGCAAGGACAAGGGGCCGAGGGCAAGC
CAAGGCCTCCTTGTCAACCTCGACCTCCCCGCTTTTCTACCCCTCGGATG
GTGATGCGGGGTTGTAGTCCGCCAACTGGGCCACCATGCTGTGTCTTCCT
TCTCGTCGCCCTCCTCACCATTTGCCTAATCTCTCCTCTCCCCACCGTCC
ACGCTGCCGTCGAAGGGGCGAGCACAGGCGGTCGTCGAGTTGTGGAAGTC
TACCACCCTTTCCCCTTCACGCCCGAAGGCCTCATCCGCCAGCTGACCCA
TGCCCAGCAAGCCGTCAACAAAGGTAGCCTCTCCATTGCTTTGGCAGCGA
AAGACGGTGTCGTCCTTATTGGGGAACGCCGGGATTTATCTCCACTCGTC
GTGGGTCCCACGCCTAAGATTGGGAGATTAGCTCAGCATGTGGCATACGT
AATGGCAGGCCTCGTGCCGGATGGCCGTTATCTGGTGCGACGTGGACGGG
CCTTGGCGCAAAAACACTGGTTTGAATACGGAGAGGAAGTGGGATTACCT
GCTTTGTTAATGGAGCTGAGCAAAGTCGTGACTTCGGCACATTATCGAGC
CCCGCGCGAGGGGAAGACTGGAGGCAACAAGGGAGAGAAGAGTAGTAGTT
TTTTTGAGGAAATTCGGTCGAGGCCATCTGTGGACCCCATAGGGGATGCT
GAAGCCGAGGTTCGGAAGGAGGGACTGCCTGCGAGACATTTCGGGGTTGG
GTTTTTGTTTGCGGGGCCGGAGGTCGAGTGTGAGGCGCCGGCGCTGTTAG
AGCCTCTTGTTGAAGGAGGGAGGGAGGGCGAGGAAATGAGGAAGGACGGG
GTCTACCCACCATGGGTGGTATATGAAATGGGACCTTCGGGGCTATTCGT
CCGGTGGTCGGCCAGGGCGATTGGGGAGGGAGGGGAACAGGCGGAGGCTT
TGTTGGAAGCGAGATATCGACCGGATATGAGCTTAGAGGCGTGTAAACGG
CTTGCGGTTCAAGTGTGTGACACGGTGTTGGCCGCCTCCTCTCCCTCTGC
TCCGCTTCCTTCCTCCTTCACGGCGAGGCAGGAGGAGACAATAGAGAATT
TGGAGATGGCGTGTTTAACGAGGGATGGAAATGGCCGGCCTTTCTTGAAA
CGGTTGTCAGATGAGGAGCTGAGGCAGTTACGGGGAAGGGTCAGTGAGAC
GATGGGGTTGGTGGAAGCCACCACCACCACCACATCCTCCTCCTCTTAAT
TATCCTCTATATACTCCTCCACCTTCTCGTCCTACTCCTTCCCCCCTCAC
CATCTGGTTGATGATTCACCATGTAAATAGTCTTCGAGATGCAGGGATAA
AGGTAGCACTGACAAATGCCTTGAGAAGCATCCGTTAAATACAAATTACC
ATCAATATAAATGCAAAATTAAGATGAACGAGCCAGTAAAATTCATTCTG
ACCCACACCCGCCCAGCCTCTAAAATGTCACCGCGGAAGATAAAGTAATG
GTGAAGAAATGAAACAGAAGCACATCACTCGTGACT
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Coding sequence (CDS) from alignment at chr6:604719..606254+

>NO06G02060.1 ID=NO06G02060.1|Name=NO06G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr6:604719..606254+ (Nannochloropsis oceanica)
ATGGTGATGCGGGGTTGTAGTCCGCCAACTGGGCCACCATGCTGTGTCTT
CCTTCTCGTCGCCCTCCTCACCATTTGCCTAATCTCTCCTCTCCCCACCG
TCCACGCTGCCGTCGAAGGGGCGAGCACAGGCGGTCGTCGAGTTGTGGAA
GTCTACCACCCTTTCCCCTTCACGCCCGAAGGCCTCATCCGCCAGCTGAC
CCATGCCCAGCAAGCCGTCAACAAAGGTAGCCTCTCCATTGCTTTGGCAG
CGAAAGACGGTGTCGTCCTTATTGGGGAACGCCGGGATTTATCTCCACTC
GTCGTGGGTCCCACGCCTAAGATTGGGAGATTAGCTCAGCATGTGGCATA
CGTAATGGCAGGCCTCGTGCCGGATGGCCGTTATCTGGTGCGACGTGGAC
GGGCCTTGGCGCAAAAACACTGGTTTGAATACGGAGAGGAAGTGGGATTA
CCTGCTTTGTTAATGGAGCTGAGCAAAGTCGTGACTTCGGCACATTATCG
AGCCCCGCGCGAGGGGAAGACTGGAGGCAACAAGGGAGAGAAGAGTAGTA
GTTTTTTTGAGGAAATTCGGTCGAGGCCATCTGTGGACCCCATAGGGGAT
GCTGAAGCCGAGGTTCGGAAGGAGGGACTGCCTGCGAGACATTTCGGGGT
TGGGTTTTTGTTTGCGGGGCCGGAGGTCGAGTGTGAGGCGCCGGCGCTGT
TAGAGCCTCTTGTTGAAGGAGGGAGGGAGGGCGAGGAAATGAGGAAGGAC
GGGGTCTACCCACCATGGGTGGTATATGAAATGGGACCTTCGGGGCTATT
CGTCCGGTGGTCGGCCAGGGCGATTGGGGAGGGAGGGGAACAGGCGGAGG
CTTTGTTGGAAGCGAGATATCGACCGGATATGAGCTTAGAGGCGTGTAAA
CGGCTTGCGGTTCAAGTGTGTGACACGGTGTTGGCCGCCTCCTCTCCCTC
TGCTCCGCTTCCTTCCTCCTTCACGGCGAGGCAGGAGGAGACAATAGAGA
ATTTGGAGATGGCGTGTTTAACGAGGGATGGAAATGGCCGGCCTTTCTTG
AAACGGTTGTCAGATGAGGAGCTGAGGCAGTTACGGGGAAGGGTCAGTGA
GACGATGGGGTTGGTGGAAGCCACCACCACCACCACATCCTCCTCCTCTT
AA
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Synonyms
Publications