NO06G02040.2, NO06G02040.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02040.2
Unique NameNO06G02040.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1330
Alignment locationchr6:599634..601128 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:599634..601128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G02040.2 vs.
Match: EWM26212.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 186.8 bits (473), Expect = 8.900e-44
Identity = 124/280 (44.29%), Postives = 160/280 (57.14%), Query Frame = 0 
Query:    1 MQVARSFFGRRAYPYMTYFHSPPPYHERQRRLCCGAHTLNNLFQYKWVDSSAMDALATSLAVADQEEQSNSTGSTDHERGWWPGIVAAASS--HSRLYKSLIPGLGSYDVSVLVEALKQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKERGK-------DRTVGIILNRMSRNVTLRWLLDGRHWLALVPRSSSSSTAAAGAAAATATIEAGEVAWWDVDSKLPAPMLIGGVPQLLIYLRKNILEEGGQAFVVTEDEKEEEEDEEQREEEEKEEEDG 272
            MQVA+  +   AYP +    + P YHE QRRLCCG HTLNNL+Q+ W+D++ MD LA+SL  AD+       GS     GW    +  AS       Y+S +PGLG YDVSVLVEALK + A+F MH+L N +LE+DL  L  RLS   G+  G        +R +G+ILNR SR    RWLL+GRHWLAL+P  S S  AA+G           ++ WW +DSKLPAP+L+GG    +  +R+ +  E GQAF+V E     E     R     EE  G
Sbjct:    1 MQVAQPLWP--AYP-LRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGS-----GWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGS--AASGGE---------QIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHG 261
The following BLAST results are available for this feature:
BLAST of NO06G02040.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26212.18.900e-4444.29conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02040NO06G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02040.2NO06G02040.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02040.2.cds1NO06G02040.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02040.2.cds2NO06G02040.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02040.2 ID=NO06G02040.2|Name=NO06G02040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1330bp
CACACAGAAAAGGCTCGCACCCAAGGCTAGCCAGCCAGCCAGTTTAAGCG
GTATCAACGACCGCAGCAACGCCTCAACCGACGTCCATCCGCACCCCAAA
AAATGTGCGTTCCTCCCCATACCACCTGTCGTGCCTTGCATGCCTTCGGC
CCTCCCTTCTCCATTTCCTTGTTCAATGAAAATAAACCATCGCCCCTATG
CCTTTCTTTGCATCTCTAGTGCCCCCCCTGCGCGCTTTCGCCCTACTCCC
CACCCACGCATGCCCTCCGAACCACCAACCCGACGGAGGATCAACAGTAC
CTTTGGGAGCCGCCCTTTCTTTTCAATAAGGGACGGGCAATTCCGAGGAG
TCATCGGAAGTATTTTTCGATGCTCCTTAATTCGCCCTTGTGACTGTCCA
CCTCCAATAGCAAAAAACGACATCATAGTGCATGCAGGTGGCACGGTCCT
TTTTCGGAAGGCGGGCATACCCCTATATGACCTATTTTCACTCTCCTCCC
CCCTACCATGAACGCCAACGCCGGCTCTGCTGCGGTGCCCACACCCTCAA
CAATCTCTTTCAATACAAATGGGTCGACTCGTCCGCCATGGACGCGCTTG
CCACCTCTCTGGCTGTTGCTGACCAAGAAGAGCAAAGCAACAGCACCGGC
AGCACTGATCACGAGAGAGGGTGGTGGCCAGGCATCGTGGCTGCTGCCTC
GTCTCATTCCAGACTTTACAAGAGTCTGATTCCCGGGTTGGGTAGTTATG
ATGTGTCGGTGTTGGTGGAGGCATTGAAACAAAAAAAGGCGAAGTTTGCG
ATGCACTTATTGGGAAATCAACAGTTGGAAAAAGACTTGACTGCATTAAG
TGATCGACTTTCCAGGGAAGGAGGGAAGGAGAGAGGGAAAGACAGAACAG
TAGGCATTATATTGAATAGAATGTCGCGGAATGTGACGCTGCGGTGGTTG
TTGGACGGGAGGCATTGGCTGGCGCTTGTTCCTCGGTCTTCCTCCTCTTC
AACAGCAGCAGCGGGAGCAGCAGCAGCAACAGCAACTATAGAAGCAGGAG
AAGTAGCATGGTGGGACGTGGACTCTAAACTTCCGGCGCCAATGTTGATA
GGTGGAGTACCCCAGCTGCTGATTTACCTTAGGAAGAACATTCTGGAAGA
GGGAGGACAGGCGTTCGTGGTTACGGAGGACGAAAAGGAGGAAGAGGAGG
ACGAGGAGCAGAGGGAGGAGGAGGAGAAAGAAGAGGAGGACGGGAATTAA
GGATTAAGGGAGAAAAAGATTGAAGGGAATAGCAAGGAAGAGTGTGTAAA
GAAACAATTGTGAATAAATGGAGACGAAAG
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protein sequence of NO06G02040.2

>NO06G02040.2-protein ID=NO06G02040.2-protein|Name=NO06G02040.2|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MQVARSFFGRRAYPYMTYFHSPPPYHERQRRLCCGAHTLNNLFQYKWVDS
SAMDALATSLAVADQEEQSNSTGSTDHERGWWPGIVAAASSHSRLYKSLI
PGLGSYDVSVLVEALKQKKAKFAMHLLGNQQLEKDLTALSDRLSREGGKE
RGKDRTVGIILNRMSRNVTLRWLLDGRHWLALVPRSSSSSTAAAGAAAAT
ATIEAGEVAWWDVDSKLPAPMLIGGVPQLLIYLRKNILEEGGQAFVVTED
EKEEEEDEEQREEEEKEEEDGN*
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mRNA from alignment at chr6:599634..601128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02040.2 ID=NO06G02040.2|Name=NO06G02040.2|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp|location=Sequence derived from alignment at chr6:599634..601128+ (Nannochloropsis oceanica)
CACACAGAAAAGGCTCGCACCCAAGGCTAGCCAGCCAGCCAGTTTAAGCG
GTATCAACGACCGCAGCAACGCCTCAACCGACGTCCATCCGCACCCCAAA
AAATGTGCGTTCCTCCCCATACCACCTGTCGTGCCTTGCATGCCTTCGGC
CCTCCCTTCTCCATTTCCTTGTTCAATGAAAATAAACCATCGCCCCTATG
CCTTTCTTTGCATCTCTAGTGCCCCCCCTGCGCGCTTTCGCCCTACTCCC
CACCCACGCATGCCCTCCGAACCACCAACCCGACGGAGGATCAACAGTAC
CTTTGGGAGCCGCCCTTTCTTTTCAATAAGGGACGGGCAATTCCGAGGAG
TCATCGGAAGTATTTTTCGATGCTCCTTAATTCGCCCTTGTGACTGTCCA
CCTCCAATAGCAAAAAACGACATCATAGTGCATGCAGGTGGCACGGTCCT
TTTTCGGAAGGCGGGCATACCCCTGTGAGTCTCCATTTAGTCGCGACAAT
TCTTGCCCGTTTATAAAATTTGAGAGTCTGCGTAGATTAAAAAATAGTCC
AACCTGGTGATTCACTTTCCTTCGCTCTCCACGCATGCATTTAACTGACC
TCAAAAGCTCTCTCGTTCTCCCTATATTTCATTCCGCAGATATGACCTAT
TTTCACTCTCCTCCCCCCTACCATGAACGCCAACGCCGGCTCTGCTGCGG
TGCCCACACCCTCAACAATCTCTTTCAATACAAATGGGTCGACTCGTCCG
CCATGGACGCGCTTGCCACCTCTCTGGCTGTTGCTGACCAAGAAGAGCAA
AGCAACAGCACCGGCAGCACTGATCACGAGAGAGGGTGGTGGCCAGGCAT
CGTGGCTGCTGCCTCGTCTCATTCCAGACTTTACAAGAGTCTGATTCCCG
GGTTGGGTAGTTATGATGTGTCGGTGTTGGTGGAGGCATTGAAACAAAAA
AAGGCGAAGTTTGCGATGCACTTATTGGGAAATCAACAGTTGGAAAAAGA
CTTGACTGCATTAAGTGATCGACTTTCCAGGGAAGGAGGGAAGGAGAGAG
GGAAAGACAGAACAGTAGGCATTATATTGAATAGAATGTCGCGGAATGTG
ACGCTGCGGTGGTTGTTGGACGGGAGGCATTGGCTGGCGCTTGTTCCTCG
GTCTTCCTCCTCTTCAACAGCAGCAGCGGGAGCAGCAGCAGCAACAGCAA
CTATAGAAGCAGGAGAAGTAGCATGGTGGGACGTGGACTCTAAACTTCCG
GCGCCAATGTTGATAGGTGGAGTACCCCAGCTGCTGATTTACCTTAGGAA
GAACATTCTGGAAGAGGGAGGACAGGCGTTCGTGGTTACGGAGGACGAAA
AGGAGGAAGAGGAGGACGAGGAGCAGAGGGAGGAGGAGGAGAAAGAAGAG
GAGGACGGGAATTAAGGATTAAGGGAGAAAAAGATTGAAGGGAATAGCAA
GGAAGAGTGTGTAAAGAAACAATTGTGAATAAATGGAGACGAAAG
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Coding sequence (CDS) from alignment at chr6:599634..601128+

>NO06G02040.2 ID=NO06G02040.2|Name=NO06G02040.2|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at chr6:599634..601128+ (Nannochloropsis oceanica)
ATGCAGGTGGCACGGTCCTTTTTCGGAAGGCGGGCATACCCCTATATGAC
CTATTTTCACTCTCCTCCCCCCTACCATGAACGCCAACGCCGGCTCTGCT
GCGGTGCCCACACCCTCAACAATCTCTTTCAATACAAATGGGTCGACTCG
TCCGCCATGGACGCGCTTGCCACCTCTCTGGCTGTTGCTGACCAAGAAGA
GCAAAGCAACAGCACCGGCAGCACTGATCACGAGAGAGGGTGGTGGCCAG
GCATCGTGGCTGCTGCCTCGTCTCATTCCAGACTTTACAAGAGTCTGATT
CCCGGGTTGGGTAGTTATGATGTGTCGGTGTTGGTGGAGGCATTGAAACA
AAAAAAGGCGAAGTTTGCGATGCACTTATTGGGAAATCAACAGTTGGAAA
AAGACTTGACTGCATTAAGTGATCGACTTTCCAGGGAAGGAGGGAAGGAG
AGAGGGAAAGACAGAACAGTAGGCATTATATTGAATAGAATGTCGCGGAA
TGTGACGCTGCGGTGGTTGTTGGACGGGAGGCATTGGCTGGCGCTTGTTC
CTCGGTCTTCCTCCTCTTCAACAGCAGCAGCGGGAGCAGCAGCAGCAACA
GCAACTATAGAAGCAGGAGAAGTAGCATGGTGGGACGTGGACTCTAAACT
TCCGGCGCCAATGTTGATAGGTGGAGTACCCCAGCTGCTGATTTACCTTA
GGAAGAACATTCTGGAAGAGGGAGGACAGGCGTTCGTGGTTACGGAGGAC
GAAAAGGAGGAAGAGGAGGACGAGGAGCAGAGGGAGGAGGAGGAGAAAGA
AGAGGAGGACGGGAATTAA
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Synonyms
Publications