NO06G02020.1, NO06G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G02020.1
Unique NameNO06G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length420
Alignment locationchr6:597745..598288 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:597745..598288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G02020.1 vs.
Match: EWM26218.1 (Acyl-CoA N-acyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 220.3 bits (560), Expect = 3.700e-54
Identity = 99/117 (84.62%), Postives = 111/117 (94.87%), Query Frame = 0
Query:    1 MEVRRRYWKQLEGSKKFPYGCGLLLGAAAMRHAYEKGCKKAELLAINDDEKSHQLLLGFYRTAGFVVVKEVTNDISCVPDLLVWGGIGTRMDMPVEDYLRRWRSVIVTRGEEFMAAR 118
            M+VRRRYWKQL+GS +FPYGCGLLLGAAAMR+AY+KGC KAELLAINDDEKSH+LLLGFYRTAGFV VKEVTND+ CVPDLLVWGG+GTRMDMPVE+YLRRWR+VIV+RGEEF+  R
Sbjct:  122 MQVRRRYWKQLDGSNRFPYGCGLLLGAAAMRYAYDKGCSKAELLAINDDEKSHRLLLGFYRTAGFVSVKEVTNDLRCVPDLLVWGGVGTRMDMPVEEYLRRWRTVIVSRGEEFLNRR 238          
The following BLAST results are available for this feature:
BLAST of NO06G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26218.13.700e-5484.62Acyl-CoA N-acyltransferase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02020NO06G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G02020.1NO06G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G02020.1.cds1NO06G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G02020.1.cds2NO06G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G02020.1 ID=NO06G02020.1|Name=NO06G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=420bp
ATGGAGGTTCGCCGCCGGTACTGGAAACAACTCGAAGGCAGCAAAAAATT
TCCCTATGGATGCGGGCTCCTCCTAGGTGCGGCCGCCATGCGTCACGCCT
ATGAGAAAGGCTGCAAGAAAGCAGAGCTTTTGGCCATCAATGACGACGAG
AAAAGCCATCAGTTATTGTTAGGGTTTTATCGGACTGCTGGGTTTGTGGT
CGTGAAGGAGGTGACGAACGATATCAGTTGTGTGCCCGATTTGTTGGTTT
GGGGTGGAATAGGCACACGGATGGATATGCCCGTTGAAGATTACTTGAGA
AGATGGCGGAGCGTGATTGTGACAAGAGGGGAGGAGTTTATGGCTGCGAG
GAGTTGTAGTACTAGCAGCAGCAGCAGCAGCAGTGGTAATAGGGAGAAGG
AAAAGCGAGAGGCAACGTGA
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protein sequence of NO06G02020.1

>NO06G02020.1-protein ID=NO06G02020.1-protein|Name=NO06G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MEVRRRYWKQLEGSKKFPYGCGLLLGAAAMRHAYEKGCKKAELLAINDDE
KSHQLLLGFYRTAGFVVVKEVTNDISCVPDLLVWGGIGTRMDMPVEDYLR
RWRSVIVTRGEEFMAARSCSTSSSSSSSGNREKEKREAT*
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mRNA from alignment at chr6:597745..598288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G02020.1 ID=NO06G02020.1|Name=NO06G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=544bp|location=Sequence derived from alignment at chr6:597745..598288+ (Nannochloropsis oceanica)
ATGGAGGTAACGAGGGAGAGAGGTTAGCGAAGGGTTGAGAAATGCGAGAG TCGTGTATCCATTCTGGGGGTATGCCAGAAGAGTATGCTTCTTCGACTTA TTTACTACCTCATTCCATCCCCACCATTAGGTTCGCCGCCGGTACTGGAA ACAACTCGAAGGCAGCAAAAAATTTCCCTATGGATGCGGGCTCCTCCTAG GTGCGGCCGCCATGCGTCACGCCTATGAGAAAGGCTGCAAGAAAGCAGAG CTTTTGGCCATCAATGACGACGAGAAAAGCCATCAGTTATTGTTAGGGTT TTATCGGACTGCTGGGTTTGTGGTCGTGAAGGAGGTGACGAACGATATCA GTTGTGTGCCCGATTTGTTGGTTTGGGGTGGAATAGGCACACGGATGGAT ATGCCCGTTGAAGATTACTTGAGAAGATGGCGGAGCGTGATTGTGACAAG AGGGGAGGAGTTTATGGCTGCGAGGAGTTGTAGTACTAGCAGCAGCAGCA GCAGCAGTGGTAATAGGGAGAAGGAAAAGCGAGAGGCAACGTGA
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Coding sequence (CDS) from alignment at chr6:597745..598288+

>NO06G02020.1 ID=NO06G02020.1|Name=NO06G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at chr6:597745..598288+ (Nannochloropsis oceanica)
ATGGAGGTTCGCCGCCGGTACTGGAAACAACTCGAAGGCAGCAAAAAATT
TCCCTATGGATGCGGGCTCCTCCTAGGTGCGGCCGCCATGCGTCACGCCT
ATGAGAAAGGCTGCAAGAAAGCAGAGCTTTTGGCCATCAATGACGACGAG
AAAAGCCATCAGTTATTGTTAGGGTTTTATCGGACTGCTGGGTTTGTGGT
CGTGAAGGAGGTGACGAACGATATCAGTTGTGTGCCCGATTTGTTGGTTT
GGGGTGGAATAGGCACACGGATGGATATGCCCGTTGAAGATTACTTGAGA
AGATGGCGGAGCGTGATTGTGACAAGAGGGGAGGAGTTTATGGCTGCGAG
GAGTTGTAGTACTAGCAGCAGCAGCAGCAGCAGTGGTAATAGGGAGAAGG
AAAAGCGAGAGGCAACGTGA
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Synonyms
Publications