|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:593951..596623 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G02010.1 vs.
Match: GAY00302.1 (Hypothetical protein PINS_008170 [Pythium insidiosum]) HSP 1 Score: 167.2 bits (422), Expect = 2.400e-37 Identity = 124/356 (34.83%), Postives = 182/356 (51.12%), Query Frame = 0
Query: 537 RGPKADMEDTHVIVAALKRSGDSSTVLDPGGGGGGGGGGGGGGIDDDAV--PVSFYGVFDGHCGPVAAELAAAHLHRMVGARKKKFVGGWEERK---KLTEEECVARAKRALEDSFADMEALILKALMEEGRRQDGSTAIAAVVAGERLFVANLGDCRAVLATQTPEGRVEATRLSVDHKPDVEEEKKRVGKAGGRVEFSGCWRVAHSSIPMRLAVSRSFGDPTFKRYYSADAPSLMLRRHVSGTGMQEEEVNAGPPLPLPPEGFEPLVSPVPEVTYHRLTRDDLFLVLASDGVWDMMSDSEAILVVAEVFEQHNTLGNAEAPFTEFAVKKAAERVIGLALSKGAYDNCTVLVVGF 888
+G +A MED + + A L + G DDD + P S V+DGH GP+AAE A+ ++ F+ R +L ++E + + + L D+FA ++ +L+ M E +R DGST + ++ +LFVANLGD R V T +G VE R+SVDHKPD++EE KR+ +AGG+V FSGCWRVAH IP+RLAVS + + + A LP PLVS VP++ ++ D LV A+DG+WD +SD +AI +V E FE++ G E T ++ AA ++ AL+K + DN T +V+GF
Sbjct: 272 QGARAYMEDRYSVTARLFEESED------------------GDEDDDELQSPASLLAVYDGHNGPLAAEYASHRFRELLS--DNAFLRELCRRPPYYRLRDDE-IEKVQAVLRDAFAAVDDEVLELTMSENKR-DGSTVLLGLMIAGKLFVANLGDSRGVWGTV--DGEVE--RISVDHKPDLDEETKRIEEAGGKVIFSGCWRVAHDEIPLRLAVS---------------------------RSLGDHPLKAN----LPVTCSAPLVSVVPDIQVLDISGVDDVLVFATDGLWDRLSDEDAIEIVRERFEEYQRSGVVEP--TVSKMQFAANALVETALAKRSMDNITAMVIGF 568
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G02010.1 ID=NO06G02010.1|Name=NO06G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2673bp ATGCAAGCGGCCAGAAGTGAGGGGCAAAGTTATCAGCAGCAGGCCCACCA CATCTCCTCCTTCCATTCCCACCACCACTATCACCACCCACAGGATTGCT CTAGAAACGATCACGCAACAGCGAGGAGAAGCGCGCAGGCACCTGGCGAT ATGCCTCTGGAAGGGAGGGCCTACTCCCCAACCCCCAAAGAAGAGGACAG GGAGGGAGGGAGGAGAGAGGGAGGGGAATATGGAAGGAAGCAACGAGGTC GCAGCCCCAAACGTAGAGGTAGTCTTAGTGACCAGCACCGGTCGCCGTAC TACCACGATAGGAAGGAGGGGAGGAAGGAAGAGGAGGAGAGGAAGAGGGA GGGAGTGGGGGAGTGTCGGGGGGTAAGCTTCGAGGAGCACCAGCGGCAGC AGCAGCAGCAGCAAAAGAAGAAAGAGGAGGAGGATGACCACCGACATCAT TATTCCACTTCTTTAAGAGTAGTGGTTATGGTAGAGGAACAGCAGCAGCA GCGCGAGCAGCAGCGGCGGCGTTGCAGCAATCACCATCAGCAGCAGCAGC AGCAGCAGTGCCAGCAGCATCCGAACAACCTTTGCGACAAGGAAAAGCCG CATTTCGATTACCACCATCACCACCACAATCATCATCATCATAATCAACA GCAACGGCGAGAGCAGCAGCAGAAGTATTCTCGAAACCATCATCGAGGGC GGGAGCGTGGAGAAAGGGAGGAGAGGGAAGGGGAGAGGATAGAAAGAGAG GATAGTTGTGGTAAAGGAAAAGAAAAAGGAGAAGGAGGAGCAGACGGAGG AGAAGGAAGAAATAGGGAACGAAGAGAAGAAAGACATACCAGGAATAGAA GGAAGAAGGATAAACAAAAGAGAAGGAAGGCGAGGAAGAAGGAGAAAGAG GAGAACGGGCATCATGTGGAGAAGAAGCACAGTCACAGTGAGAGGCAGGT CACTTCATCACCTGCTACCGTCGTTGCTGCGGCTGCTACGCCTGGAAATA AAAAAGAGAAGAAGATACAGGAAACGGACTCGTCCCCGAGCAGGTTCAAA TGGGCCATGAAAGAGGTAGGCAAGCCCCACGAGCACGAGCACACAAAAAG TCAAAAGATAGGTGACGGCAAGAAAAAGAAACGGAGCATCTTACTCAGTT TCGGAGAAGAAATTGCCGATGAAGAGGTAGGAGCAGTGCAAAAGAAGGCG AACCTTGACAGGGTGACAGCACAGCGAATGAAAACGGAACGCATCGAAGC CATGCGTCTTTCGGGTAACGCTGCCGCCGCTGCTGCTGCAGCTGCTGCTG CTCCTCCTCCTCCTCCTCGGCCTTCCGAAGTTGCTTCCATCCGGTCAGCC AAAATGTCAGCGACTAGGACATCCACACCTTCTGGCACCTCCTCGTCTTT CTCTTCCTCTTCCGTCTCCTCCCTCCGACTCATTGACCAAGACATGGATG TCGTGTCTGGCGCTCAAGCCCCCTCGTCCACCATTGCAACCACCACTGCT TCCTCCATCCATTTTTCCGCGTTCTCCTCCTCCAAACCCCCCTTATTGAT GAAAGATGAGATGCGTCCTGCTCAAGCTCCGGTGTGTATAGCCCGAGCAG CATCAACTCGAGGACCGAAAGCCGACATGGAGGACACGCACGTCATCGTC GCCGCTCTAAAAAGGAGCGGTGATAGCAGCACTGTTCTCGATCCAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGCGGAATAGACGATGATG CAGTCCCTGTGTCTTTCTATGGTGTGTTTGACGGCCATTGTGGACCCGTG GCAGCCGAGCTTGCCGCTGCCCACCTTCACCGAATGGTAGGCGCACGAAA AAAGAAATTTGTGGGTGGGTGGGAGGAAAGGAAGAAACTGACAGAGGAGG AGTGTGTGGCACGAGCAAAGAGGGCTCTGGAGGACTCGTTCGCAGACATG GAGGCGTTGATTTTGAAGGCCTTAATGGAGGAGGGGAGGAGGCAGGACGG GTCCACGGCTATAGCTGCAGTTGTCGCTGGAGAGAGATTATTCGTGGCTA ATCTGGGGGATTGTCGAGCAGTGCTTGCGACGCAGACACCCGAGGGGAGG GTGGAAGCGACGAGGCTGTCAGTTGATCATAAGCCGGACGTGGAGGAAGA AAAAAAGAGGGTTGGGAAGGCGGGGGGGAGAGTGGAGTTTTCGGGTTGTT GGCGTGTGGCCCATTCGTCGATCCCCATGCGTTTGGCTGTGTCACGTAGT TTTGGTGATCCTACATTCAAACGTTATTATAGTGCGGACGCGCCGTCACT GATGCTGAGGAGGCATGTTAGTGGGACGGGGATGCAGGAGGAGGAGGTTA ACGCAGGCCCCCCCTTGCCGTTGCCGCCTGAAGGATTTGAGCCTTTAGTA TCGCCAGTACCGGAGGTAACGTACCACCGCCTGACGAGAGATGATCTGTT TTTGGTGTTGGCTTCCGATGGTGTGTGGGATATGATGAGTGATTCTGAAG CGATTCTTGTGGTTGCGGAAGTGTTTGAACAGCACAACACCCTCGGAAAC GCTGAGGCGCCCTTTACGGAATTCGCGGTGAAAAAAGCGGCGGAGAGAGT GATTGGTTTGGCGTTGAGTAAGGGAGCTTATGATAACTGTACGGTGTTGG TCGTAGGTTTTCAGGTTCAATAA back to topprotein sequence of NO06G02010.1 >NO06G02010.1-protein ID=NO06G02010.1-protein|Name=NO06G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=891bp MQAARSEGQSYQQQAHHISSFHSHHHYHHPQDCSRNDHATARRSAQAPGD MPLEGRAYSPTPKEEDREGGRREGGEYGRKQRGRSPKRRGSLSDQHRSPY YHDRKEGRKEEEERKREGVGECRGVSFEEHQRQQQQQQKKKEEEDDHRHH YSTSLRVVVMVEEQQQQREQQRRRCSNHHQQQQQQQCQQHPNNLCDKEKP HFDYHHHHHNHHHHNQQQRREQQQKYSRNHHRGRERGEREEREGERIERE DSCGKGKEKGEGGADGGEGRNRERREERHTRNRRKKDKQKRRKARKKEKE ENGHHVEKKHSHSERQVTSSPATVVAAAATPGNKKEKKIQETDSSPSRFK WAMKEVGKPHEHEHTKSQKIGDGKKKKRSILLSFGEEIADEEVGAVQKKA NLDRVTAQRMKTERIEAMRLSGNAAAAAAAAAAAPPPPPRPSEVASIRSA KMSATRTSTPSGTSSSFSSSSVSSLRLIDQDMDVVSGAQAPSSTIATTTA SSIHFSAFSSSKPPLLMKDEMRPAQAPVCIARAASTRGPKADMEDTHVIV AALKRSGDSSTVLDPGGGGGGGGGGGGGGIDDDAVPVSFYGVFDGHCGPV AAELAAAHLHRMVGARKKKFVGGWEERKKLTEEECVARAKRALEDSFADM EALILKALMEEGRRQDGSTAIAAVVAGERLFVANLGDCRAVLATQTPEGR VEATRLSVDHKPDVEEEKKRVGKAGGRVEFSGCWRVAHSSIPMRLAVSRS FGDPTFKRYYSADAPSLMLRRHVSGTGMQEEEVNAGPPLPLPPEGFEPLV SPVPEVTYHRLTRDDLFLVLASDGVWDMMSDSEAILVVAEVFEQHNTLGN AEAPFTEFAVKKAAERVIGLALSKGAYDNCTVLVVGFQVQ* back to topmRNA from alignment at chr6:593951..596623+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G02010.1 ID=NO06G02010.1|Name=NO06G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2673bp|location=Sequence derived from alignment at chr6:593951..596623+ (Nannochloropsis oceanica) ATGCAAGCGGCCAGAAGTGAGGGGCAAAGTTATCAGCAGCAGGCCCACCA
CATCTCCTCCTTCCATTCCCACCACCACTATCACCACCCACAGGATTGCT
CTAGAAACGATCACGCAACAGCGAGGAGAAGCGCGCAGGCACCTGGCGAT
ATGCCTCTGGAAGGGAGGGCCTACTCCCCAACCCCCAAAGAAGAGGACAG
GGAGGGAGGGAGGAGAGAGGGAGGGGAATATGGAAGGAAGCAACGAGGTC
GCAGCCCCAAACGTAGAGGTAGTCTTAGTGACCAGCACCGGTCGCCGTAC
TACCACGATAGGAAGGAGGGGAGGAAGGAAGAGGAGGAGAGGAAGAGGGA
GGGAGTGGGGGAGTGTCGGGGGGTAAGCTTCGAGGAGCACCAGCGGCAGC
AGCAGCAGCAGCAAAAGAAGAAAGAGGAGGAGGATGACCACCGACATCAT
TATTCCACTTCTTTAAGAGTAGTGGTTATGGTAGAGGAACAGCAGCAGCA
GCGCGAGCAGCAGCGGCGGCGTTGCAGCAATCACCATCAGCAGCAGCAGC
AGCAGCAGTGCCAGCAGCATCCGAACAACCTTTGCGACAAGGAAAAGCCG
CATTTCGATTACCACCATCACCACCACAATCATCATCATCATAATCAACA
GCAACGGCGAGAGCAGCAGCAGAAGTATTCTCGAAACCATCATCGAGGGC
GGGAGCGTGGAGAAAGGGAGGAGAGGGAAGGGGAGAGGATAGAAAGAGAG
GATAGTTGTGGTAAAGGAAAAGAAAAAGGAGAAGGAGGAGCAGACGGAGG
AGAAGGAAGAAATAGGGAACGAAGAGAAGAAAGACATACCAGGAATAGAA
GGAAGAAGGATAAACAAAAGAGAAGGAAGGCGAGGAAGAAGGAGAAAGAG
GAGAACGGGCATCATGTGGAGAAGAAGCACAGTCACAGTGAGAGGCAGGT
CACTTCATCACCTGCTACCGTCGTTGCTGCGGCTGCTACGCCTGGAAATA
AAAAAGAGAAGAAGATACAGGAAACGGACTCGTCCCCGAGCAGGTTCAAA
TGGGCCATGAAAGAGGTAGGCAAGCCCCACGAGCACGAGCACACAAAAAG
TCAAAAGATAGGTGACGGCAAGAAAAAGAAACGGAGCATCTTACTCAGTT
TCGGAGAAGAAATTGCCGATGAAGAGGTAGGAGCAGTGCAAAAGAAGGCG
AACCTTGACAGGGTGACAGCACAGCGAATGAAAACGGAACGCATCGAAGC
CATGCGTCTTTCGGGTAACGCTGCCGCCGCTGCTGCTGCAGCTGCTGCTG
CTCCTCCTCCTCCTCCTCGGCCTTCCGAAGTTGCTTCCATCCGGTCAGCC
AAAATGTCAGCGACTAGGACATCCACACCTTCTGGCACCTCCTCGTCTTT
CTCTTCCTCTTCCGTCTCCTCCCTCCGACTCATTGACCAAGACATGGATG
TCGTGTCTGGCGCTCAAGCCCCCTCGTCCACCATTGCAACCACCACTGCT
TCCTCCATCCATTTTTCCGCGTTCTCCTCCTCCAAACCCCCCTTATTGAT
GAAAGATGAGATGCGTCCTGCTCAAGCTCCGGTGTGTATAGCCCGAGCAG
CATCAACTCGAGGACCGAAAGCCGACATGGAGGACACGCACGTCATCGTC
GCCGCTCTAAAAAGGAGCGGTGATAGCAGCACTGTTCTCGATCCAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGCGGAATAGACGATGATG
CAGTCCCTGTGTCTTTCTATGGTGTGTTTGACGGCCATTGTGGACCCGTG
GCAGCCGAGCTTGCCGCTGCCCACCTTCACCGAATGGTAGGCGCACGAAA
AAAGAAATTTGTGGGTGGGTGGGAGGAAAGGAAGAAACTGACAGAGGAGG
AGTGTGTGGCACGAGCAAAGAGGGCTCTGGAGGACTCGTTCGCAGACATG
GAGGCGTTGATTTTGAAGGCCTTAATGGAGGAGGGGAGGAGGCAGGACGG
GTCCACGGCTATAGCTGCAGTTGTCGCTGGAGAGAGATTATTCGTGGCTA
ATCTGGGGGATTGTCGAGCAGTGCTTGCGACGCAGACACCCGAGGGGAGG
GTGGAAGCGACGAGGCTGTCAGTTGATCATAAGCCGGACGTGGAGGAAGA
AAAAAAGAGGGTTGGGAAGGCGGGGGGGAGAGTGGAGTTTTCGGGTTGTT
GGCGTGTGGCCCATTCGTCGATCCCCATGCGTTTGGCTGTGTCACGTAGT
TTTGGTGATCCTACATTCAAACGTTATTATAGTGCGGACGCGCCGTCACT
GATGCTGAGGAGGCATGTTAGTGGGACGGGGATGCAGGAGGAGGAGGTTA
ACGCAGGCCCCCCCTTGCCGTTGCCGCCTGAAGGATTTGAGCCTTTAGTA
TCGCCAGTACCGGAGGTAACGTACCACCGCCTGACGAGAGATGATCTGTT
TTTGGTGTTGGCTTCCGATGGTGTGTGGGATATGATGAGTGATTCTGAAG
CGATTCTTGTGGTTGCGGAAGTGTTTGAACAGCACAACACCCTCGGAAAC
GCTGAGGCGCCCTTTACGGAATTCGCGGTGAAAAAAGCGGCGGAGAGAGT
GATTGGTTTGGCGTTGAGTAAGGGAGCTTATGATAACTGTACGGTGTTGG
TCGTAGGTTTTCAGGTTCAATAA back to topCoding sequence (CDS) from alignment at chr6:593951..596623+ >NO06G02010.1 ID=NO06G02010.1|Name=NO06G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=2673bp|location=Sequence derived from alignment at chr6:593951..596623+ (Nannochloropsis oceanica) ATGCAAGCGGCCAGAAGTGAGGGGCAAAGTTATCAGCAGCAGGCCCACCA CATCTCCTCCTTCCATTCCCACCACCACTATCACCACCCACAGGATTGCT CTAGAAACGATCACGCAACAGCGAGGAGAAGCGCGCAGGCACCTGGCGAT ATGCCTCTGGAAGGGAGGGCCTACTCCCCAACCCCCAAAGAAGAGGACAG GGAGGGAGGGAGGAGAGAGGGAGGGGAATATGGAAGGAAGCAACGAGGTC GCAGCCCCAAACGTAGAGGTAGTCTTAGTGACCAGCACCGGTCGCCGTAC TACCACGATAGGAAGGAGGGGAGGAAGGAAGAGGAGGAGAGGAAGAGGGA GGGAGTGGGGGAGTGTCGGGGGGTAAGCTTCGAGGAGCACCAGCGGCAGC AGCAGCAGCAGCAAAAGAAGAAAGAGGAGGAGGATGACCACCGACATCAT TATTCCACTTCTTTAAGAGTAGTGGTTATGGTAGAGGAACAGCAGCAGCA GCGCGAGCAGCAGCGGCGGCGTTGCAGCAATCACCATCAGCAGCAGCAGC AGCAGCAGTGCCAGCAGCATCCGAACAACCTTTGCGACAAGGAAAAGCCG CATTTCGATTACCACCATCACCACCACAATCATCATCATCATAATCAACA GCAACGGCGAGAGCAGCAGCAGAAGTATTCTCGAAACCATCATCGAGGGC GGGAGCGTGGAGAAAGGGAGGAGAGGGAAGGGGAGAGGATAGAAAGAGAG GATAGTTGTGGTAAAGGAAAAGAAAAAGGAGAAGGAGGAGCAGACGGAGG AGAAGGAAGAAATAGGGAACGAAGAGAAGAAAGACATACCAGGAATAGAA GGAAGAAGGATAAACAAAAGAGAAGGAAGGCGAGGAAGAAGGAGAAAGAG GAGAACGGGCATCATGTGGAGAAGAAGCACAGTCACAGTGAGAGGCAGGT CACTTCATCACCTGCTACCGTCGTTGCTGCGGCTGCTACGCCTGGAAATA AAAAAGAGAAGAAGATACAGGAAACGGACTCGTCCCCGAGCAGGTTCAAA TGGGCCATGAAAGAGGTAGGCAAGCCCCACGAGCACGAGCACACAAAAAG TCAAAAGATAGGTGACGGCAAGAAAAAGAAACGGAGCATCTTACTCAGTT TCGGAGAAGAAATTGCCGATGAAGAGGTAGGAGCAGTGCAAAAGAAGGCG AACCTTGACAGGGTGACAGCACAGCGAATGAAAACGGAACGCATCGAAGC CATGCGTCTTTCGGGTAACGCTGCCGCCGCTGCTGCTGCAGCTGCTGCTG CTCCTCCTCCTCCTCCTCGGCCTTCCGAAGTTGCTTCCATCCGGTCAGCC AAAATGTCAGCGACTAGGACATCCACACCTTCTGGCACCTCCTCGTCTTT CTCTTCCTCTTCCGTCTCCTCCCTCCGACTCATTGACCAAGACATGGATG TCGTGTCTGGCGCTCAAGCCCCCTCGTCCACCATTGCAACCACCACTGCT TCCTCCATCCATTTTTCCGCGTTCTCCTCCTCCAAACCCCCCTTATTGAT GAAAGATGAGATGCGTCCTGCTCAAGCTCCGGTGTGTATAGCCCGAGCAG CATCAACTCGAGGACCGAAAGCCGACATGGAGGACACGCACGTCATCGTC GCCGCTCTAAAAAGGAGCGGTGATAGCAGCACTGTTCTCGATCCAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGCGGAATAGACGATGATG CAGTCCCTGTGTCTTTCTATGGTGTGTTTGACGGCCATTGTGGACCCGTG GCAGCCGAGCTTGCCGCTGCCCACCTTCACCGAATGGTAGGCGCACGAAA AAAGAAATTTGTGGGTGGGTGGGAGGAAAGGAAGAAACTGACAGAGGAGG AGTGTGTGGCACGAGCAAAGAGGGCTCTGGAGGACTCGTTCGCAGACATG GAGGCGTTGATTTTGAAGGCCTTAATGGAGGAGGGGAGGAGGCAGGACGG GTCCACGGCTATAGCTGCAGTTGTCGCTGGAGAGAGATTATTCGTGGCTA ATCTGGGGGATTGTCGAGCAGTGCTTGCGACGCAGACACCCGAGGGGAGG GTGGAAGCGACGAGGCTGTCAGTTGATCATAAGCCGGACGTGGAGGAAGA AAAAAAGAGGGTTGGGAAGGCGGGGGGGAGAGTGGAGTTTTCGGGTTGTT GGCGTGTGGCCCATTCGTCGATCCCCATGCGTTTGGCTGTGTCACGTAGT TTTGGTGATCCTACATTCAAACGTTATTATAGTGCGGACGCGCCGTCACT GATGCTGAGGAGGCATGTTAGTGGGACGGGGATGCAGGAGGAGGAGGTTA ACGCAGGCCCCCCCTTGCCGTTGCCGCCTGAAGGATTTGAGCCTTTAGTA TCGCCAGTACCGGAGGTAACGTACCACCGCCTGACGAGAGATGATCTGTT TTTGGTGTTGGCTTCCGATGGTGTGTGGGATATGATGAGTGATTCTGAAG CGATTCTTGTGGTTGCGGAAGTGTTTGAACAGCACAACACCCTCGGAAAC GCTGAGGCGCCCTTTACGGAATTCGCGGTGAAAAAAGCGGCGGAGAGAGT GATTGGTTTGGCGTTGAGTAAGGGAGCTTATGATAACTGTACGGTGTTGG TCGTAGGTTTTCAGGTTCAATAA back to top
|