NO06G01900.1, NO06G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01900.1
Unique NameNO06G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1557
Alignment locationchr6:571157..572713 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:571157..572713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G01900.1 vs.
Match: XP_008605043.1 (hypothetical protein SDRG_01303 [Saprolegnia diclina VS20]; EQC41329.1 hypothetical protein SDRG_01303 [Saprolegnia diclina VS20])

HSP 1 Score: 161.8 bits (408), Expect = 4.400e-36
Identity = 87/209 (41.63%), Postives = 119/209 (56.94%), Query Frame = 0
Query:   42 QHCKMMGGKFGDLVQLSLAVVGIGGLVIKRFQETNPRPWRIWGLDVGKQCLGSLYAHVLNMLLAIGLTSIVGGGDECAWYFVNYFIDSSLGVLLCLILIKAAEWWAARKEAGSWQRLYIADMGNYGSPPQCRIWYWQTLIWLGIVTFSKFGLFFFMIAFRDQFGAWGRFLFKPLQEHPNAELIIVMVIVPGVFNVAQFWILDNLLKSST 251
            Q C+++ G    LVQ+ L V+ +  L  KR  E   R   IW LDVGKQ +G++  H  N+L+AI L  +    D+C WYF+N+  D +LG+L+ L L+K  +  A      +W    I D G+YG+PP  RIW  Q + WL I+ FSK  +   +IA     GA G  LF PL  HP +EL++VM+I P   NV QFWI D+ LK  T
Sbjct:    3 QRCELLSGPQTYLVQVVLFVIALTSLWYKRHVERPKRSLEIWALDVGKQGIGAVVGHFTNILIAISLPPVT---DQCVWYFLNFVTDCTLGMLIALSLLKFQQELAVSL---NWHA--IQDSGDYGNPPSYRIWGIQLVAWLSIIVFSKGIVTSVLIATAGPLGAIGNALFSPLAMHPMSELVVVMIICPSFLNVMQFWIQDSFLKRDT 203          
The following BLAST results are available for this feature:
BLAST of NO06G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008605043.14.400e-3641.63hypothetical protein SDRG_01303 [Saprolegnia dicli... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01900NO06G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01900.1NO06G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01900.1.cds1NO06G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01900.1 ID=NO06G01900.1|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp
CAGACTGGAGTGCGAGCTGTGTGTGCCGGCTGACCTATTGAGGATCCGAC
GTCTAGCTGTTTAAGAGCTTAAAAGCTAAAAGCGCGCGCGTCCTCTTCCC
CCGGCATAGCGACATTTCACACCACGCCGATGACGATGGCAAGCTCGTTT
GCAGAAGGCGCGGCCACAGTCCTGGTAAGACTGCTACAGGAGGCCGCCAA
CTCGACCGCTGCAGGAGAAGACGACCCCCCCGCCGCACCCGACGACGGCA
AGCAGCATTGCAAAATGATGGGAGGAAAGTTTGGCGACCTGGTGCAGCTG
AGCTTGGCCGTTGTGGGGATTGGCGGGTTGGTTATCAAGCGCTTTCAAGA
GACAAATCCGCGGCCTTGGAGGATATGGGGTCTGGACGTGGGGAAACAGT
GCCTGGGCTCATTGTATGCTCATGTCTTGAACATGCTGCTGGCAATAGGT
TTGACGAGCATTGTGGGCGGCGGGGATGAGTGTGCTTGGTACTTTGTAAA
TTACTTCATTGATAGCAGCCTGGGGGTACTGCTATGTCTCATTCTGATAA
AGGCAGCGGAGTGGTGGGCGGCGCGGAAGGAGGCCGGGTCCTGGCAGCGA
CTGTACATTGCGGACATGGGCAATTACGGTTCGCCCCCCCAGTGCCGGAT
CTGGTATTGGCAAACCCTTATTTGGCTTGGCATCGTCACCTTCTCCAAGT
TCGGCCTCTTCTTTTTTATGATTGCGTTTCGGGATCAGTTCGGGGCATGG
GGTCGGTTTTTGTTTAAGCCTTTGCAAGAACATCCGAATGCGGAGCTAAT
TATCGTCATGGTCATCGTCCCGGGCGTCTTCAACGTTGCACAATTTTGGA
TACTTGACAACTTGCTCAAAAGCAGCACGACAGAAGTTGAATCGCCTTCT
TTGAGTCCTGACAAGGGCCAGCATTTTAAAGTTAACTACGAGCCGATTCT
GGAGGGACCAGGCGGTGCTGTTGCCGGTGCTGGTGCTATTGGAGGACGAC
GACGGAAGGGGTCAGGAGGGGCGTTGGACTGGTTCTCGACCACTACGTCT
TCTTCATGGAATTGGGGTACTGGTGCTCCGACGGGTGGGCCGGGACAAGG
GCGAGGGGCAGGGGCACGAATGGGCACACCGCCCGCCCCTGGTGGAGGGC
CGGGGATGAGTACGAGAACTTTCTACAAGCCACCGGTAGAGGTGGCGAAA
CCTTTAGACCCGAATGTGCCGGCATGGATGACAACGAGCACGAATTCGAC
AATTTTACCTCCGAGACGACCGTATGATAGTGATGACATGGAGGCGAACG
GTGTAGCGTTGGCGTAGGGATTGAGGGAGGGAGGGAGAGAGGAAAGGGAG
GTTTGTAACATACATATGCAGGGACTAATCAAACGGTGATAGGTACAGGA
AAACCAATTTAAAACTGGAAGATAAGGGAAATTAAAACTAGAGAGTAACA
GTGTATTTGTTGTGTTATGGTGTGTGTATTGTCGAAATCTGATTCACCCA
AGAGGCGAGAAACGGAGCCAGGACTAATGAAGAAGCCAAGATTACGCAGT
CTGACCA
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protein sequence of NO06G01900.1

>NO06G01900.1-protein ID=NO06G01900.1-protein|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MTMASSFAEGAATVLVRLLQEAANSTAAGEDDPPAAPDDGKQHCKMMGGK
FGDLVQLSLAVVGIGGLVIKRFQETNPRPWRIWGLDVGKQCLGSLYAHVL
NMLLAIGLTSIVGGGDECAWYFVNYFIDSSLGVLLCLILIKAAEWWAARK
EAGSWQRLYIADMGNYGSPPQCRIWYWQTLIWLGIVTFSKFGLFFFMIAF
RDQFGAWGRFLFKPLQEHPNAELIIVMVIVPGVFNVAQFWILDNLLKSST
TEVESPSLSPDKGQHFKVNYEPILEGPGGAVAGAGAIGGRRRKGSGGALD
WFSTTTSSSWNWGTGAPTGGPGQGRGAGARMGTPPAPGGGPGMSTRTFYK
PPVEVAKPLDPNVPAWMTTSTNSTILPPRRPYDSDDMEANGVALA*
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mRNA from alignment at chr6:571157..572713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01900.1 ID=NO06G01900.1|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr6:571157..572713+ (Nannochloropsis oceanica)
CAGACTGGAGTGCGAGCTGTGTGTGCCGGCTGACCTATTGAGGATCCGAC GTCTAGCTGTTTAAGAGCTTAAAAGCTAAAAGCGCGCGCGTCCTCTTCCC CCGGCATAGCGACATTTCACACCACGCCGATGACGATGGCAAGCTCGTTT GCAGAAGGCGCGGCCACAGTCCTGGTAAGACTGCTACAGGAGGCCGCCAA CTCGACCGCTGCAGGAGAAGACGACCCCCCCGCCGCACCCGACGACGGCA AGCAGCATTGCAAAATGATGGGAGGAAAGTTTGGCGACCTGGTGCAGCTG AGCTTGGCCGTTGTGGGGATTGGCGGGTTGGTTATCAAGCGCTTTCAAGA GACAAATCCGCGGCCTTGGAGGATATGGGGTCTGGACGTGGGGAAACAGT GCCTGGGCTCATTGTATGCTCATGTCTTGAACATGCTGCTGGCAATAGGT TTGACGAGCATTGTGGGCGGCGGGGATGAGTGTGCTTGGTACTTTGTAAA TTACTTCATTGATAGCAGCCTGGGGGTACTGCTATGTCTCATTCTGATAA AGGCAGCGGAGTGGTGGGCGGCGCGGAAGGAGGCCGGGTCCTGGCAGCGA CTGTACATTGCGGACATGGGCAATTACGGTTCGCCCCCCCAGTGCCGGAT CTGGTATTGGCAAACCCTTATTTGGCTTGGCATCGTCACCTTCTCCAAGT TCGGCCTCTTCTTTTTTATGATTGCGTTTCGGGATCAGTTCGGGGCATGG GGTCGGTTTTTGTTTAAGCCTTTGCAAGAACATCCGAATGCGGAGCTAAT TATCGTCATGGTCATCGTCCCGGGCGTCTTCAACGTTGCACAATTTTGGA TACTTGACAACTTGCTCAAAAGCAGCACGACAGAAGTTGAATCGCCTTCT TTGAGTCCTGACAAGGGCCAGCATTTTAAAGTTAACTACGAGCCGATTCT GGAGGGACCAGGCGGTGCTGTTGCCGGTGCTGGTGCTATTGGAGGACGAC GACGGAAGGGGTCAGGAGGGGCGTTGGACTGGTTCTCGACCACTACGTCT TCTTCATGGAATTGGGGTACTGGTGCTCCGACGGGTGGGCCGGGACAAGG GCGAGGGGCAGGGGCACGAATGGGCACACCGCCCGCCCCTGGTGGAGGGC CGGGGATGAGTACGAGAACTTTCTACAAGCCACCGGTAGAGGTGGCGAAA CCTTTAGACCCGAATGTGCCGGCATGGATGACAACGAGCACGAATTCGAC AATTTTACCTCCGAGACGACCGTATGATAGTGATGACATGGAGGCGAACG GTGTAGCGTTGGCGTAGGGATTGAGGGAGGGAGGGAGAGAGGAAAGGGAG GTTTGTAACATACATATGCAGGGACTAATCAAACGGTGATAGGTACAGGA AAACCAATTTAAAACTGGAAGATAAGGGAAATTAAAACTAGAGAGTAACA GTGTATTTGTTGTGTTATGGTGTGTGTATTGTCGAAATCTGATTCACCCA AGAGGCGAGAAACGGAGCCAGGACTAATGAAGAAGCCAAGATTACGCAGT CTGACCA
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Coding sequence (CDS) from alignment at chr6:571157..572713+

>NO06G01900.1 ID=NO06G01900.1|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr6:571157..572713+ (Nannochloropsis oceanica)
ATGACGATGGCAAGCTCGTTTGCAGAAGGCGCGGCCACAGTCCTGGTAAG
ACTGCTACAGGAGGCCGCCAACTCGACCGCTGCAGGAGAAGACGACCCCC
CCGCCGCACCCGACGACGGCAAGCAGCATTGCAAAATGATGGGAGGAAAG
TTTGGCGACCTGGTGCAGCTGAGCTTGGCCGTTGTGGGGATTGGCGGGTT
GGTTATCAAGCGCTTTCAAGAGACAAATCCGCGGCCTTGGAGGATATGGG
GTCTGGACGTGGGGAAACAGTGCCTGGGCTCATTGTATGCTCATGTCTTG
AACATGCTGCTGGCAATAGGTTTGACGAGCATTGTGGGCGGCGGGGATGA
GTGTGCTTGGTACTTTGTAAATTACTTCATTGATAGCAGCCTGGGGGTAC
TGCTATGTCTCATTCTGATAAAGGCAGCGGAGTGGTGGGCGGCGCGGAAG
GAGGCCGGGTCCTGGCAGCGACTGTACATTGCGGACATGGGCAATTACGG
TTCGCCCCCCCAGTGCCGGATCTGGTATTGGCAAACCCTTATTTGGCTTG
GCATCGTCACCTTCTCCAAGTTCGGCCTCTTCTTTTTTATGATTGCGTTT
CGGGATCAGTTCGGGGCATGGGGTCGGTTTTTGTTTAAGCCTTTGCAAGA
ACATCCGAATGCGGAGCTAATTATCGTCATGGTCATCGTCCCGGGCGTCT
TCAACGTTGCACAATTTTGGATACTTGACAACTTGCTCAAAAGCAGCACG
ACAGAAGTTGAATCGCCTTCTTTGAGTCCTGACAAGGGCCAGCATTTTAA
AGTTAACTACGAGCCGATTCTGGAGGGACCAGGCGGTGCTGTTGCCGGTG
CTGGTGCTATTGGAGGACGACGACGGAAGGGGTCAGGAGGGGCGTTGGAC
TGGTTCTCGACCACTACGTCTTCTTCATGGAATTGGGGTACTGGTGCTCC
GACGGGTGGGCCGGGACAAGGGCGAGGGGCAGGGGCACGAATGGGCACAC
CGCCCGCCCCTGGTGGAGGGCCGGGGATGAGTACGAGAACTTTCTACAAG
CCACCGGTAGAGGTGGCGAAACCTTTAGACCCGAATGTGCCGGCATGGAT
GACAACGAGCACGAATTCGACAATTTTACCTCCGAGACGACCGTATGATA
GTGATGACATGGAGGCGAACGGTGTAGCGTTGGCGTAG
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Synonyms
Publications