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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:571157..572713 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01900.1 vs.
Match: XP_008605043.1 (hypothetical protein SDRG_01303 [Saprolegnia diclina VS20]; EQC41329.1 hypothetical protein SDRG_01303 [Saprolegnia diclina VS20]) HSP 1 Score: 161.8 bits (408), Expect = 4.400e-36 Identity = 87/209 (41.63%), Postives = 119/209 (56.94%), Query Frame = 0
Query: 42 QHCKMMGGKFGDLVQLSLAVVGIGGLVIKRFQETNPRPWRIWGLDVGKQCLGSLYAHVLNMLLAIGLTSIVGGGDECAWYFVNYFIDSSLGVLLCLILIKAAEWWAARKEAGSWQRLYIADMGNYGSPPQCRIWYWQTLIWLGIVTFSKFGLFFFMIAFRDQFGAWGRFLFKPLQEHPNAELIIVMVIVPGVFNVAQFWILDNLLKSST 251
Q C+++ G LVQ+ L V+ + L KR E R IW LDVGKQ +G++ H N+L+AI L + D+C WYF+N+ D +LG+L+ L L+K + A +W I D G+YG+PP RIW Q + WL I+ FSK + +IA GA G LF PL HP +EL++VM+I P NV QFWI D+ LK T
Sbjct: 3 QRCELLSGPQTYLVQVVLFVIALTSLWYKRHVERPKRSLEIWALDVGKQGIGAVVGHFTNILIAISLPPVT---DQCVWYFLNFVTDCTLGMLIALSLLKFQQELAVSL---NWHA--IQDSGDYGNPPSYRIWGIQLVAWLSIIVFSKGIVTSVLIATAGPLGAIGNALFSPLAMHPMSELVVVMIICPSFLNVMQFWIQDSFLKRDT 203
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01900.1 ID=NO06G01900.1|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp CAGACTGGAGTGCGAGCTGTGTGTGCCGGCTGACCTATTGAGGATCCGAC GTCTAGCTGTTTAAGAGCTTAAAAGCTAAAAGCGCGCGCGTCCTCTTCCC CCGGCATAGCGACATTTCACACCACGCCGATGACGATGGCAAGCTCGTTT GCAGAAGGCGCGGCCACAGTCCTGGTAAGACTGCTACAGGAGGCCGCCAA CTCGACCGCTGCAGGAGAAGACGACCCCCCCGCCGCACCCGACGACGGCA AGCAGCATTGCAAAATGATGGGAGGAAAGTTTGGCGACCTGGTGCAGCTG AGCTTGGCCGTTGTGGGGATTGGCGGGTTGGTTATCAAGCGCTTTCAAGA GACAAATCCGCGGCCTTGGAGGATATGGGGTCTGGACGTGGGGAAACAGT GCCTGGGCTCATTGTATGCTCATGTCTTGAACATGCTGCTGGCAATAGGT TTGACGAGCATTGTGGGCGGCGGGGATGAGTGTGCTTGGTACTTTGTAAA TTACTTCATTGATAGCAGCCTGGGGGTACTGCTATGTCTCATTCTGATAA AGGCAGCGGAGTGGTGGGCGGCGCGGAAGGAGGCCGGGTCCTGGCAGCGA CTGTACATTGCGGACATGGGCAATTACGGTTCGCCCCCCCAGTGCCGGAT CTGGTATTGGCAAACCCTTATTTGGCTTGGCATCGTCACCTTCTCCAAGT TCGGCCTCTTCTTTTTTATGATTGCGTTTCGGGATCAGTTCGGGGCATGG GGTCGGTTTTTGTTTAAGCCTTTGCAAGAACATCCGAATGCGGAGCTAAT TATCGTCATGGTCATCGTCCCGGGCGTCTTCAACGTTGCACAATTTTGGA TACTTGACAACTTGCTCAAAAGCAGCACGACAGAAGTTGAATCGCCTTCT TTGAGTCCTGACAAGGGCCAGCATTTTAAAGTTAACTACGAGCCGATTCT GGAGGGACCAGGCGGTGCTGTTGCCGGTGCTGGTGCTATTGGAGGACGAC GACGGAAGGGGTCAGGAGGGGCGTTGGACTGGTTCTCGACCACTACGTCT TCTTCATGGAATTGGGGTACTGGTGCTCCGACGGGTGGGCCGGGACAAGG GCGAGGGGCAGGGGCACGAATGGGCACACCGCCCGCCCCTGGTGGAGGGC CGGGGATGAGTACGAGAACTTTCTACAAGCCACCGGTAGAGGTGGCGAAA CCTTTAGACCCGAATGTGCCGGCATGGATGACAACGAGCACGAATTCGAC AATTTTACCTCCGAGACGACCGTATGATAGTGATGACATGGAGGCGAACG GTGTAGCGTTGGCGTAGGGATTGAGGGAGGGAGGGAGAGAGGAAAGGGAG GTTTGTAACATACATATGCAGGGACTAATCAAACGGTGATAGGTACAGGA AAACCAATTTAAAACTGGAAGATAAGGGAAATTAAAACTAGAGAGTAACA GTGTATTTGTTGTGTTATGGTGTGTGTATTGTCGAAATCTGATTCACCCA AGAGGCGAGAAACGGAGCCAGGACTAATGAAGAAGCCAAGATTACGCAGT CTGACCA back to topprotein sequence of NO06G01900.1 >NO06G01900.1-protein ID=NO06G01900.1-protein|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp MTMASSFAEGAATVLVRLLQEAANSTAAGEDDPPAAPDDGKQHCKMMGGK FGDLVQLSLAVVGIGGLVIKRFQETNPRPWRIWGLDVGKQCLGSLYAHVL NMLLAIGLTSIVGGGDECAWYFVNYFIDSSLGVLLCLILIKAAEWWAARK EAGSWQRLYIADMGNYGSPPQCRIWYWQTLIWLGIVTFSKFGLFFFMIAF RDQFGAWGRFLFKPLQEHPNAELIIVMVIVPGVFNVAQFWILDNLLKSST TEVESPSLSPDKGQHFKVNYEPILEGPGGAVAGAGAIGGRRRKGSGGALD WFSTTTSSSWNWGTGAPTGGPGQGRGAGARMGTPPAPGGGPGMSTRTFYK PPVEVAKPLDPNVPAWMTTSTNSTILPPRRPYDSDDMEANGVALA* back to topmRNA from alignment at chr6:571157..572713+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01900.1 ID=NO06G01900.1|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr6:571157..572713+ (Nannochloropsis oceanica) CAGACTGGAGTGCGAGCTGTGTGTGCCGGCTGACCTATTGAGGATCCGAC
GTCTAGCTGTTTAAGAGCTTAAAAGCTAAAAGCGCGCGCGTCCTCTTCCC
CCGGCATAGCGACATTTCACACCACGCCGATGACGATGGCAAGCTCGTTT
GCAGAAGGCGCGGCCACAGTCCTGGTAAGACTGCTACAGGAGGCCGCCAA
CTCGACCGCTGCAGGAGAAGACGACCCCCCCGCCGCACCCGACGACGGCA
AGCAGCATTGCAAAATGATGGGAGGAAAGTTTGGCGACCTGGTGCAGCTG
AGCTTGGCCGTTGTGGGGATTGGCGGGTTGGTTATCAAGCGCTTTCAAGA
GACAAATCCGCGGCCTTGGAGGATATGGGGTCTGGACGTGGGGAAACAGT
GCCTGGGCTCATTGTATGCTCATGTCTTGAACATGCTGCTGGCAATAGGT
TTGACGAGCATTGTGGGCGGCGGGGATGAGTGTGCTTGGTACTTTGTAAA
TTACTTCATTGATAGCAGCCTGGGGGTACTGCTATGTCTCATTCTGATAA
AGGCAGCGGAGTGGTGGGCGGCGCGGAAGGAGGCCGGGTCCTGGCAGCGA
CTGTACATTGCGGACATGGGCAATTACGGTTCGCCCCCCCAGTGCCGGAT
CTGGTATTGGCAAACCCTTATTTGGCTTGGCATCGTCACCTTCTCCAAGT
TCGGCCTCTTCTTTTTTATGATTGCGTTTCGGGATCAGTTCGGGGCATGG
GGTCGGTTTTTGTTTAAGCCTTTGCAAGAACATCCGAATGCGGAGCTAAT
TATCGTCATGGTCATCGTCCCGGGCGTCTTCAACGTTGCACAATTTTGGA
TACTTGACAACTTGCTCAAAAGCAGCACGACAGAAGTTGAATCGCCTTCT
TTGAGTCCTGACAAGGGCCAGCATTTTAAAGTTAACTACGAGCCGATTCT
GGAGGGACCAGGCGGTGCTGTTGCCGGTGCTGGTGCTATTGGAGGACGAC
GACGGAAGGGGTCAGGAGGGGCGTTGGACTGGTTCTCGACCACTACGTCT
TCTTCATGGAATTGGGGTACTGGTGCTCCGACGGGTGGGCCGGGACAAGG
GCGAGGGGCAGGGGCACGAATGGGCACACCGCCCGCCCCTGGTGGAGGGC
CGGGGATGAGTACGAGAACTTTCTACAAGCCACCGGTAGAGGTGGCGAAA
CCTTTAGACCCGAATGTGCCGGCATGGATGACAACGAGCACGAATTCGAC
AATTTTACCTCCGAGACGACCGTATGATAGTGATGACATGGAGGCGAACG
GTGTAGCGTTGGCGTAGGGATTGAGGGAGGGAGGGAGAGAGGAAAGGGAG
GTTTGTAACATACATATGCAGGGACTAATCAAACGGTGATAGGTACAGGA
AAACCAATTTAAAACTGGAAGATAAGGGAAATTAAAACTAGAGAGTAACA
GTGTATTTGTTGTGTTATGGTGTGTGTATTGTCGAAATCTGATTCACCCA
AGAGGCGAGAAACGGAGCCAGGACTAATGAAGAAGCCAAGATTACGCAGT
CTGACCA back to topCoding sequence (CDS) from alignment at chr6:571157..572713+ >NO06G01900.1 ID=NO06G01900.1|Name=NO06G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at chr6:571157..572713+ (Nannochloropsis oceanica) ATGACGATGGCAAGCTCGTTTGCAGAAGGCGCGGCCACAGTCCTGGTAAG ACTGCTACAGGAGGCCGCCAACTCGACCGCTGCAGGAGAAGACGACCCCC CCGCCGCACCCGACGACGGCAAGCAGCATTGCAAAATGATGGGAGGAAAG TTTGGCGACCTGGTGCAGCTGAGCTTGGCCGTTGTGGGGATTGGCGGGTT GGTTATCAAGCGCTTTCAAGAGACAAATCCGCGGCCTTGGAGGATATGGG GTCTGGACGTGGGGAAACAGTGCCTGGGCTCATTGTATGCTCATGTCTTG AACATGCTGCTGGCAATAGGTTTGACGAGCATTGTGGGCGGCGGGGATGA GTGTGCTTGGTACTTTGTAAATTACTTCATTGATAGCAGCCTGGGGGTAC TGCTATGTCTCATTCTGATAAAGGCAGCGGAGTGGTGGGCGGCGCGGAAG GAGGCCGGGTCCTGGCAGCGACTGTACATTGCGGACATGGGCAATTACGG TTCGCCCCCCCAGTGCCGGATCTGGTATTGGCAAACCCTTATTTGGCTTG GCATCGTCACCTTCTCCAAGTTCGGCCTCTTCTTTTTTATGATTGCGTTT CGGGATCAGTTCGGGGCATGGGGTCGGTTTTTGTTTAAGCCTTTGCAAGA ACATCCGAATGCGGAGCTAATTATCGTCATGGTCATCGTCCCGGGCGTCT TCAACGTTGCACAATTTTGGATACTTGACAACTTGCTCAAAAGCAGCACG ACAGAAGTTGAATCGCCTTCTTTGAGTCCTGACAAGGGCCAGCATTTTAA AGTTAACTACGAGCCGATTCTGGAGGGACCAGGCGGTGCTGTTGCCGGTG CTGGTGCTATTGGAGGACGACGACGGAAGGGGTCAGGAGGGGCGTTGGAC TGGTTCTCGACCACTACGTCTTCTTCATGGAATTGGGGTACTGGTGCTCC GACGGGTGGGCCGGGACAAGGGCGAGGGGCAGGGGCACGAATGGGCACAC CGCCCGCCCCTGGTGGAGGGCCGGGGATGAGTACGAGAACTTTCTACAAG CCACCGGTAGAGGTGGCGAAACCTTTAGACCCGAATGTGCCGGCATGGAT GACAACGAGCACGAATTCGACAATTTTACCTCCGAGACGACCGTATGATA GTGATGACATGGAGGCGAACGGTGTAGCGTTGGCGTAG back to top
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