NO06G01860.1, NO06G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01860.1
Unique NameNO06G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr6:560676..561619 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:560676..561619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G01860.1 vs.
Match: EWM26208.1 (TB2/DP1/HVA22-related protein [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 1.000e-23
Identity = 72/149 (48.32%), Postives = 92/149 (61.74%), Query Frame = 0
Query:   39 NIPESTSSNSTPHRNQIDNNDSHLHDVEHWCLYWLVSSILTLLLERPVDALVLSWVPSYRWIKLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGGRKLAVAAVSVATAAVAGPGEGEGERGQGQRQGSAGGG 188
            +IPES+++      +  D + S     EHW LYWL+SSI+T LLE+PVDA V+SWVP YRW+KL  FLWLALPRFQGAARLYY+++ P LI +E EI  AR   W+  K      AVA +S  T  V    EG   +  G+   +  GG
Sbjct:   12 SIPESSAAAHADVPDVFDESQS----AEHWSLYWLISSIITFLLEKPVDA-VISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNARDSVWKMTKKSSHSAAVAVLSFLTTTVTA-SEGGSSQHWGRGPATPQGG 154          
The following BLAST results are available for this feature:
BLAST of NO06G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26208.11.000e-2348.32TB2/DP1/HVA22-related protein [Nannochloropsis gad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01860NO06G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01860.1NO06G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01860.1.cds1NO06G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01860.1.cds2NO06G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01860.1 ID=NO06G01860.1|Name=NO06G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=837bp
ATGATTTATCACCCCTTTCGCATCGGCATCCTCTACGTCTATCCCATCAT
TGCCTCGTGCCGCACTGCCCTTCGATACCATCCGTATTTGCAGAAGGAGC
GGCTGCAACAGCCCAACATCCCTGAGTCTACCTCTAGCAATTCTACCCCC
CATCGAAATCAAATCGACAATAACGACAGCCACCTGCACGACGTTGAGCA
TTGGTGCCTCTACTGGCTTGTCTCCTCCATCCTCACCCTCCTCCTTGAGC
GTCCCGTCGACGCCCTGGTGTTGTCTTGGGTGCCCTCCTATCGGTGGATC
AAACTCATCTTCTTCCTCTGGTTGGCCCTCCCTCGTTTCCAAGGAGCGGC
GCGACTTTACTATTTGATAGTCCACCCCTGGTTGATACAACATGAGACTG
AAATCGATGCGGCACGGGGTAAAGCATGGGAGGCAGCGAAGGTGGGAGGA
AGGAAACTGGCGGTGGCAGCAGTTTCAGTGGCGACAGCAGCTGTGGCGGG
GCCGGGGGAGGGGGAGGGGGAGAGAGGACAAGGACAAAGGCAAGGAAGTG
CAGGTGGAGGGAGAGTAGGAGGAGGGTTGGCAGTGTTGGGAGGTGTGAGC
GGGTTTGGGGGGTTACGTGCGCTAGTTTCGGAGGCTTTGTGGGTGGTGCT
TGCTTCTCTGACAGTCCGAGCTGGAGGAGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGAGGGAAGAGGAGAGGGAGGAAAAGGGGGAGGG
GGAGAAAGAGGATCAGTGACAACAGCAGCAGTGGCACAGACAAACAATAG
GCAGAGAAGAGGAAGGCCGCGGCATGGTTTGAATTGA
back to top

protein sequence of NO06G01860.1

>NO06G01860.1-protein ID=NO06G01860.1-protein|Name=NO06G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MIYHPFRIGILYVYPIIASCRTALRYHPYLQKERLQQPNIPESTSSNSTP
HRNQIDNNDSHLHDVEHWCLYWLVSSILTLLLERPVDALVLSWVPSYRWI
KLIFFLWLALPRFQGAARLYYLIVHPWLIQHETEIDAARGKAWEAAKVGG
RKLAVAAVSVATAAVAGPGEGEGERGQGQRQGSAGGGRVGGGLAVLGGVS
GFGGLRALVSEALWVVLASLTVRAGGEGGGGGGGGGGGGEGRGEGGKGGG
GERGSVTTAAVAQTNNRQRRGRPRHGLN*
back to top

mRNA from alignment at chr6:560676..561619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01860.1 ID=NO06G01860.1|Name=NO06G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at chr6:560676..561619- (Nannochloropsis oceanica)
ATGATTTATCACCCCTTTCGGTACGTCCTTTTTTGTCTCCGTCTGTTTCC TTTCCCTCTCCCTCCCCATGATGGGGACCCAATCGATACTCCCTTAAGCA CCCACCACCACTCGATCCCCATCACAGCATCGGCATCCTCTACGTCTATC CCATCATTGCCTCGTGCCGCACTGCCCTTCGATACCATCCGTATTTGCAG AAGGAGCGGCTGCAACAGCCCAACATCCCTGAGTCTACCTCTAGCAATTC TACCCCCCATCGAAATCAAATCGACAATAACGACAGCCACCTGCACGACG TTGAGCATTGGTGCCTCTACTGGCTTGTCTCCTCCATCCTCACCCTCCTC CTTGAGCGTCCCGTCGACGCCCTGGTGTTGTCTTGGGTGCCCTCCTATCG GTGGATCAAACTCATCTTCTTCCTCTGGTTGGCCCTCCCTCGTTTCCAAG GAGCGGCGCGACTTTACTATTTGATAGTCCACCCCTGGTTGATACAACAT GAGACTGAAATCGATGCGGCACGGGGTAAAGCATGGGAGGCAGCGAAGGT GGGAGGAAGGAAACTGGCGGTGGCAGCAGTTTCAGTGGCGACAGCAGCTG TGGCGGGGCCGGGGGAGGGGGAGGGGGAGAGAGGACAAGGACAAAGGCAA GGAAGTGCAGGTGGAGGGAGAGTAGGAGGAGGGTTGGCAGTGTTGGGAGG TGTGAGCGGGTTTGGGGGGTTACGTGCGCTAGTTTCGGAGGCTTTGTGGG TGGTGCTTGCTTCTCTGACAGTCCGAGCTGGAGGAGAAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGAGGGAAGAGGAGAGGGAGGAAAAGG GGGAGGGGGAGAAAGAGGATCAGTGACAACAGCAGCAGTGGCACAGACAA ACAATAGGCAGAGAAGAGGAAGGCCGCGGCATGGTTTGAATTGA
back to top

Coding sequence (CDS) from alignment at chr6:560676..561619-

>NO06G01860.1 ID=NO06G01860.1|Name=NO06G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr6:560676..561619- (Nannochloropsis oceanica)
ATGATTTATCACCCCTTTCGCATCGGCATCCTCTACGTCTATCCCATCAT
TGCCTCGTGCCGCACTGCCCTTCGATACCATCCGTATTTGCAGAAGGAGC
GGCTGCAACAGCCCAACATCCCTGAGTCTACCTCTAGCAATTCTACCCCC
CATCGAAATCAAATCGACAATAACGACAGCCACCTGCACGACGTTGAGCA
TTGGTGCCTCTACTGGCTTGTCTCCTCCATCCTCACCCTCCTCCTTGAGC
GTCCCGTCGACGCCCTGGTGTTGTCTTGGGTGCCCTCCTATCGGTGGATC
AAACTCATCTTCTTCCTCTGGTTGGCCCTCCCTCGTTTCCAAGGAGCGGC
GCGACTTTACTATTTGATAGTCCACCCCTGGTTGATACAACATGAGACTG
AAATCGATGCGGCACGGGGTAAAGCATGGGAGGCAGCGAAGGTGGGAGGA
AGGAAACTGGCGGTGGCAGCAGTTTCAGTGGCGACAGCAGCTGTGGCGGG
GCCGGGGGAGGGGGAGGGGGAGAGAGGACAAGGACAAAGGCAAGGAAGTG
CAGGTGGAGGGAGAGTAGGAGGAGGGTTGGCAGTGTTGGGAGGTGTGAGC
GGGTTTGGGGGGTTACGTGCGCTAGTTTCGGAGGCTTTGTGGGTGGTGCT
TGCTTCTCTGACAGTCCGAGCTGGAGGAGAAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGAGGGAAGAGGAGAGGGAGGAAAAGGGGGAGGG
GGAGAAAGAGGATCAGTGACAACAGCAGCAGTGGCACAGACAAACAATAG
GCAGAGAAGAGGAAGGCCGCGGCATGGTTTGAATTGA
back to top
Synonyms
Publications