NO06G01850.1, NO06G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01850.1
Unique NameNO06G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr6:558439..559464 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:558439..559464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G01850.1 vs.
Match: EWM26259.1 (succinate fumarate mitochondrial transporter [Nannochloropsis gaditana])

HSP 1 Score: 557.8 bits (1436), Expect = 2.400e-155
Identity = 286/339 (84.37%), Postives = 303/339 (89.38%), Query Frame = 0 
Query:    1 MAPATSPATAPAITPVATPTQKATSPPKKKTMLDHLVAGGAAGFVESSVCHPLDTIKTRMQLRQAGGSTHGLFMTGARIIQKESFLALYKGLTAVYMGIVPKMAVRFSSFEAYKGYLANADGEVSPSATFLAGLGSGVTEAILVVTPAEVCKIRLQAQFHSMADPAQLATRKYRNVLQTAFLVAKEEGISALYKGVVPTVMRQGINQAVNFTTYQAVKSYWLEKQQKKDLLPWESMLFGGLSGGLGPLVNNPLDVVKTRLQKQRIVEGQLPKYRGIGQAIPVIVKEEGVLALWKGIAPRLMRIMPGQAITFMTYEFVSKHMAGVDRMVDGLVKKTASLA 340
            MAP+T+ AT     P    TQKA S PKKKT + HL+AGGAAGFVESS+CHPLDTIKTRMQLRQAGGSTHGLFMT  RI+QKESF ALYKGLTAVYMGIVPKMAVRFSSFEAYK YLA ADG+VSP  TFLAGLGSGVTEA+LVVTPAEVCKIRLQAQFHSMADP QLA RKYRNVLQTA +VA+EEGI ALYKGVVPTVMRQGINQAVNFTTYQAVK+ WLE+QQ+K+LLPWESMLFGGLSGGLGPLVNNPLDVVKTRLQKQRIVEGQLPKYRGI QAIPVIV EEGVLALWKGI PRLMRIMPGQAITFMTYEFVS+HM  V+  V  L KKTAS+A
Sbjct:    1 MAPSTATATLDLKAPDTPATQKAVSTPKKKTFVHHLIAGGAAGFVESSICHPLDTIKTRMQLRQAGGSTHGLFMTAFRIVQKESFPALYKGLTAVYMGIVPKMAVRFSSFEAYKSYLAGADGKVSPVGTFLAGLGSGVTEAVLVVTPAEVCKIRLQAQFHSMADPVQLANRKYRNVLQTAVVVAREEGIGALYKGVVPTVMRQGINQAVNFTTYQAVKTAWLERQQRKELLPWESMLFGGLSGGLGPLVNNPLDVVKTRLQKQRIVEGQLPKYRGIFQAIPVIVSEEGVLALWKGITPRLMRIMPGQAITFMTYEFVSRHMKSVEDAVGDLAKKTASIA 339
The following BLAST results are available for this feature:
BLAST of NO06G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26259.12.400e-15584.37succinate fumarate mitochondrial transporter [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01850NO06G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01850.1NO06G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01850.1.cds1NO06G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01850.1 ID=NO06G01850.1|Name=NO06G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGGCCCCCGCTACAAGCCCGGCCACCGCTCCCGCCATCACTCCTGTGGC
AACTCCCACGCAAAAAGCCACGTCCCCTCCCAAGAAAAAGACCATGCTCG
ACCACCTCGTGGCAGGTGGTGCGGCCGGCTTTGTGGAATCCTCCGTCTGC
CACCCCTTGGACACCATCAAAACCCGCATGCAGCTCCGCCAAGCCGGGGG
CTCCACTCACGGCCTCTTTATGACGGGCGCCCGCATCATCCAAAAAGAAT
CCTTCCTCGCCCTCTACAAGGGCCTCACAGCCGTCTACATGGGCATCGTT
CCCAAAATGGCCGTCCGCTTTTCCTCATTCGAAGCATACAAAGGCTACTT
GGCTAACGCCGACGGCGAGGTTTCTCCAAGCGCCACCTTCCTTGCTGGGC
TTGGCAGCGGAGTGACTGAAGCGATCCTCGTCGTTACCCCTGCAGAGGTA
TGTAAAATTCGCCTCCAAGCTCAATTTCACTCCATGGCTGACCCGGCCCA
GTTGGCGACTCGAAAGTACCGCAATGTCTTGCAGACCGCGTTCCTGGTCG
CAAAGGAGGAAGGGATCTCCGCCTTGTACAAGGGGGTTGTGCCCACGGTG
ATGAGGCAGGGAATCAACCAAGCGGTGAATTTCACGACATACCAGGCAGT
TAAGAGTTATTGGTTGGAGAAGCAGCAGAAGAAGGACTTGCTGCCGTGGG
AAAGTATGTTGTTTGGTGGGTTAAGTGGCGGGCTTGGTCCTCTTGTGAAC
AACCCGCTTGATGTCGTCAAGACCCGCCTACAGAAACAGAGGATCGTGGA
GGGACAGCTCCCTAAGTACCGGGGGATTGGGCAGGCGATCCCGGTGATCG
TGAAGGAGGAGGGGGTGTTGGCTTTGTGGAAAGGGATTGCCCCGCGGCTG
ATGCGAATCATGCCTGGCCAGGCGATTACGTTTATGACGTATGAGTTTGT
GAGTAAGCATATGGCGGGGGTGGATAGGATGGTGGATGGCTTGGTGAAAA
AGACGGCGAGTTTGGCCAGCAGGTGA
back to top

protein sequence of NO06G01850.1

>NO06G01850.1-protein ID=NO06G01850.1-protein|Name=NO06G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAPATSPATAPAITPVATPTQKATSPPKKKTMLDHLVAGGAAGFVESSVC
HPLDTIKTRMQLRQAGGSTHGLFMTGARIIQKESFLALYKGLTAVYMGIV
PKMAVRFSSFEAYKGYLANADGEVSPSATFLAGLGSGVTEAILVVTPAEV
CKIRLQAQFHSMADPAQLATRKYRNVLQTAFLVAKEEGISALYKGVVPTV
MRQGINQAVNFTTYQAVKSYWLEKQQKKDLLPWESMLFGGLSGGLGPLVN
NPLDVVKTRLQKQRIVEGQLPKYRGIGQAIPVIVKEEGVLALWKGIAPRL
MRIMPGQAITFMTYEFVSKHMAGVDRMVDGLVKKTASLASR*
back to top

mRNA from alignment at chr6:558439..559464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01850.1 ID=NO06G01850.1|Name=NO06G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at chr6:558439..559464+ (Nannochloropsis oceanica)
ATGGCCCCCGCTACAAGCCCGGCCACCGCTCCCGCCATCACTCCTGTGGC
AACTCCCACGCAAAAAGCCACGTCCCCTCCCAAGAAAAAGACCATGCTCG
ACCACCTCGTGGCAGGTGGTGCGGCCGGCTTTGTGGAATCCTCCGTCTGC
CACCCCTTGGACACCATCAAAACCCGCATGCAGCTCCGCCAAGCCGGGGG
CTCCACTCACGGCCTCTTTATGACGGGCGCCCGCATCATCCAAAAAGAAT
CCTTCCTCGCCCTCTACAAGGGCCTCACAGCCGTCTACATGGGCATCGTT
CCCAAAATGGCCGTCCGCTTTTCCTCATTCGAAGCATACAAAGGCTACTT
GGCTAACGCCGACGGCGAGGTTTCTCCAAGCGCCACCTTCCTTGCTGGGC
TTGGCAGCGGAGTGACTGAAGCGATCCTCGTCGTTACCCCTGCAGAGGTA
TGTAAAATTCGCCTCCAAGCTCAATTTCACTCCATGGCTGACCCGGCCCA
GTTGGCGACTCGAAAGTACCGCAATGTCTTGCAGACCGCGTTCCTGGTCG
CAAAGGAGGAAGGGATCTCCGCCTTGTACAAGGGGGTTGTGCCCACGGTG
ATGAGGCAGGGAATCAACCAAGCGGTGAATTTCACGACATACCAGGCAGT
TAAGAGTTATTGGTTGGAGAAGCAGCAGAAGAAGGACTTGCTGCCGTGGG
AAAGTATGTTGTTTGGTGGGTTAAGTGGCGGGCTTGGTCCTCTTGTGAAC
AACCCGCTTGATGTCGTCAAGACCCGCCTACAGAAACAGAGGATCGTGGA
GGGACAGCTCCCTAAGTACCGGGGGATTGGGCAGGCGATCCCGGTGATCG
TGAAGGAGGAGGGGGTGTTGGCTTTGTGGAAAGGGATTGCCCCGCGGCTG
ATGCGAATCATGCCTGGCCAGGCGATTACGTTTATGACGTATGAGTTTGT
GAGTAAGCATATGGCGGGGGTGGATAGGATGGTGGATGGCTTGGTGAAAA
AGACGGCGAGTTTGGCCAGCAGGTGA
back to top

Coding sequence (CDS) from alignment at chr6:558439..559464+

>NO06G01850.1 ID=NO06G01850.1|Name=NO06G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr6:558439..559464+ (Nannochloropsis oceanica)
ATGGCCCCCGCTACAAGCCCGGCCACCGCTCCCGCCATCACTCCTGTGGC
AACTCCCACGCAAAAAGCCACGTCCCCTCCCAAGAAAAAGACCATGCTCG
ACCACCTCGTGGCAGGTGGTGCGGCCGGCTTTGTGGAATCCTCCGTCTGC
CACCCCTTGGACACCATCAAAACCCGCATGCAGCTCCGCCAAGCCGGGGG
CTCCACTCACGGCCTCTTTATGACGGGCGCCCGCATCATCCAAAAAGAAT
CCTTCCTCGCCCTCTACAAGGGCCTCACAGCCGTCTACATGGGCATCGTT
CCCAAAATGGCCGTCCGCTTTTCCTCATTCGAAGCATACAAAGGCTACTT
GGCTAACGCCGACGGCGAGGTTTCTCCAAGCGCCACCTTCCTTGCTGGGC
TTGGCAGCGGAGTGACTGAAGCGATCCTCGTCGTTACCCCTGCAGAGGTA
TGTAAAATTCGCCTCCAAGCTCAATTTCACTCCATGGCTGACCCGGCCCA
GTTGGCGACTCGAAAGTACCGCAATGTCTTGCAGACCGCGTTCCTGGTCG
CAAAGGAGGAAGGGATCTCCGCCTTGTACAAGGGGGTTGTGCCCACGGTG
ATGAGGCAGGGAATCAACCAAGCGGTGAATTTCACGACATACCAGGCAGT
TAAGAGTTATTGGTTGGAGAAGCAGCAGAAGAAGGACTTGCTGCCGTGGG
AAAGTATGTTGTTTGGTGGGTTAAGTGGCGGGCTTGGTCCTCTTGTGAAC
AACCCGCTTGATGTCGTCAAGACCCGCCTACAGAAACAGAGGATCGTGGA
GGGACAGCTCCCTAAGTACCGGGGGATTGGGCAGGCGATCCCGGTGATCG
TGAAGGAGGAGGGGGTGTTGGCTTTGTGGAAAGGGATTGCCCCGCGGCTG
ATGCGAATCATGCCTGGCCAGGCGATTACGTTTATGACGTATGAGTTTGT
GAGTAAGCATATGGCGGGGGTGGATAGGATGGTGGATGGCTTGGTGAAAA
AGACGGCGAGTTTGGCCAGCAGGTGA
back to top
Synonyms
Publications