NO06G01840.1, NO06G01840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01840.1
Unique NameNO06G01840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr6:555426..557626 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:555426..557626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G01840.1 vs.
Match: EWM26223.1 (isocitrate lyase [Nannochloropsis gaditana])

HSP 1 Score: 992.3 bits (2564), Expect = 6.200e-286
Identity = 497/557 (89.23%), Postives = 520/557 (93.36%), Query Frame = 0
Query:    1 MEETRLYHEEVAATERFFRSPRFAQTARPYSAQDIVALRPSLLVEPISNRQSQKLWGLLTGLAAQGKCSYTFGALDPVQVIQMAPHVSTIYVSGWQCSSTASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARMSEAAKASEAPTDYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTKKCGHMGGKVLVAIQEHIDRLTAARLQADVMGAQTIIVARTDAEAASLLDTNIDARDHPFILGTTVPGTRALNEVIAEARAQGVSGGEMDRITDQWMAAACLKRFPEAVCDALAALPNGASKLAAWKAQAYSLSLPRARVLAKELMGGREVYFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDLAEAREFAQGVRSVVPGKMLAYNLSPSFNWDVAGLTPQEMEAFNSSLAQMGFVWQFITLAGFHANGLMTTLFAREYGKRGVVAYVEMIQRKERENEVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTESQFGAK----VSVQPGGSKRGAGAISRL 554
            MEETRLYHE+VAATE FFR+PRFAQT RPYSAQD+VALR SLLVEP SNRQ+QKLW LLTGLA QGKCSYTFGALDPVQV+QMAPHVSTIYVSGWQCSSTASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARM++A+K +E P DYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTKKCGHMGGKVLV++QEHIDRLTAARLQADVMGAQTIIVARTD EAASLLDTNIDARDHPFILG TVPGTRALNEV+AEARAQGV+G E+DRITDQW AAA L+RFPEAVCDAL+ LPN A KLA WKAQAY+LSLP+AR LAKELM GREVYFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDL+EAREFAQGVR+ VPGKMLAYNLSPSFNWDVAGL+PQEME FNSSLA MGFVWQFITLAGFHANGLMTT+FAREYGKRGVVAYVEMIQRKERE EVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTE+QFGAK      V  G     AGAISRL
Sbjct:   52 MEETRLYHEDVAATEHFFRNPRFAQTVRPYSAQDVVALRSSLLVEPASNRQAQKLWSLLTGLAGQGKCSYTFGALDPVQVVQMAPHVSTIYVSGWQCSSTASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARMTDASKVAEPPVDYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTKKCGHMGGKVLVSVQEHIDRLTAARLQADVMGAQTIIVARTDGEAASLLDTNIDARDHPFILGATVPGTRALNEVVAEARAQGVTGAELDRITDQWTAAANLRRFPEAVCDALSTLPNPAPKLAVWKAQAYNLSLPQARALAKELM-GREVYFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDLSEAREFAQGVRAAVPGKMLAYNLSPSFNWDVAGLSPQEMEHFNSSLAAMGFVWQFITLAGFHANGLMTTMFAREYGKRGVVAYVEMIQRKEREQEVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTEAQFGAKGPGAAGVSSGAGAARAGAISRL 607          
The following BLAST results are available for this feature:
BLAST of NO06G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26223.16.200e-28689.23isocitrate lyase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01840NO06G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01840.1NO06G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01840.1.cds1NO06G01840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01840.1.cds2NO06G01840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01840.1.cds3NO06G01840.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01840.1 ID=NO06G01840.1|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
ATGGAGGAGACACGCCTCTACCATGAGGAAGTGGCAGCCACCGAGCGCTT
TTTCCGCAGCCCCCGCTTTGCCCAGACGGCGCGTCCTTACTCTGCTCAGG
ACATTGTCGCCCTGCGTCCCTCCCTCCTCGTCGAGCCCATTTCTAACCGG
CAATCCCAGAAATTATGGGGCCTGCTCACTGGCCTGGCTGCGCAAGGCAA
ATGTTCCTACACCTTCGGTGCCCTTGACCCCGTCCAAGTGATTCAGATGG
CGCCGCACGTCTCTACTATCTACGTGAGTGGGTGGCAGTGCTCGTCTACG
GCTTCGACTAGCAATGAGCCCGGGCCAGACTTTGCCGACTACCCCATGGA
CACGGTTCCTAACAAAGTCCACCAGCTCTTCTCCGCTCAACTATTTCACG
ATCGTCGCCAGCAAGAAGCACGTGCTCGCATGTCGGAGGCAGCCAAGGCC
AGCGAAGCCCCCACGGACTACCTGCGTCCCATCATTGCCGATGGCGACAC
TGGCCATGGCGGTTTGACAGCCGTGATGAAGCTCACGAAAATGTTCATCG
AGCGTGGAGCGGCAGGGATCCATTTCGAGGATCAGAAGCCAGGCACAAAG
AAATGCGGCCACATGGGTGGGAAGGTCCTCGTGGCCATCCAGGAGCACAT
CGATCGTCTAACTGCCGCGCGCTTGCAGGCGGATGTGATGGGTGCACAAA
CCATCATCGTAGCGCGTACCGACGCCGAGGCCGCTTCTTTGCTGGATACG
AATATTGATGCTAGGGATCATCCTTTCATTCTGGGGACGACTGTGCCGGG
AACTCGGGCATTGAACGAGGTGATCGCCGAGGCACGTGCCCAGGGGGTGA
GCGGGGGGGAGATGGATAGGATTACGGACCAATGGATGGCGGCGGCTTGC
TTGAAGAGGTTCCCGGAGGCAGTATGTGATGCACTGGCGGCCCTGCCGAA
TGGTGCTTCGAAATTGGCGGCGTGGAAGGCGCAAGCTTACTCCCTGTCTC
TGCCCCGGGCGCGGGTGTTGGCGAAGGAGCTGATGGGTGGAAGGGAGGTG
TACTTTGATTGGGAGGCCCCCAGAAGTCGGGAGGGCTACTACCGAATCAA
GGGTGGGGTGGACTATTGTGTGGCGCGTGCGGTGGCTTATGCCCCGCATG
CGGATTTGATTTGGATGGAGACGGCGAAGCCGGACTTGGCGGAGGCGAGG
GAGTTTGCGCAAGGGGTGCGGAGTGTCGTTCCTGGAAAGATGCTGGCGTA
CAACCTCAGCCCGTCGTTCAATTGGGATGTGGCCGGTTTGACCCCGCAGG
AGATGGAGGCTTTCAATTCGAGCCTGGCGCAAATGGGGTTCGTATGGCAG
TTTATCACGTTGGCCGGCTTCCATGCAAATGGGCTGATGACCACGTTGTT
TGCGAGGGAGTACGGCAAGCGTGGGGTGGTGGCATATGTGGAGATGATTC
AGAGGAAGGAACGCGAGAATGAGGTGGACATGTTGACGCATCAGAAATGG
TCGGGTGCGGCGTTGTTGGATAAGCAGATGCAGACCGTGACGGGAGGGAT
GAGCTCGACATCCTCAATGGGGAAGGGGGTGACAGAGTCTCAATTTGGTG
CCAAAGTCTCTGTACAGCCAGGAGGGAGTAAGCGCGGCGCGGGGGCCATT
TCTCGCCTCTAG
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protein sequence of NO06G01840.1

>NO06G01840.1-protein ID=NO06G01840.1-protein|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MEETRLYHEEVAATERFFRSPRFAQTARPYSAQDIVALRPSLLVEPISNR
QSQKLWGLLTGLAAQGKCSYTFGALDPVQVIQMAPHVSTIYVSGWQCSST
ASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARMSEAAKA
SEAPTDYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTK
KCGHMGGKVLVAIQEHIDRLTAARLQADVMGAQTIIVARTDAEAASLLDT
NIDARDHPFILGTTVPGTRALNEVIAEARAQGVSGGEMDRITDQWMAAAC
LKRFPEAVCDALAALPNGASKLAAWKAQAYSLSLPRARVLAKELMGGREV
YFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDLAEAR
EFAQGVRSVVPGKMLAYNLSPSFNWDVAGLTPQEMEAFNSSLAQMGFVWQ
FITLAGFHANGLMTTLFAREYGKRGVVAYVEMIQRKERENEVDMLTHQKW
SGAALLDKQMQTVTGGMSSTSSMGKGVTESQFGAKVSVQPGGSKRGAGAI
SRL*
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mRNA from alignment at chr6:555426..557626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01840.1 ID=NO06G01840.1|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp|location=Sequence derived from alignment at chr6:555426..557626- (Nannochloropsis oceanica)
ATGGAGGAGACACGCCTCTACCATGAGGAAGTGGCAGCCACCGAGCGCTT TTTCCGCAGCCCCCGCTTTGCCCAGACGGCGCGTCCTTACTCTGCTCAGG TCAGTCAGTCCTCATGTCCAAGTTGAAGGAGGGCGGGAGGAGTGGGTGTG AAGAGTGGGTTGACCTTATGTGAACACGCGTGGAGTTGTCTGTGTGAGCC GTATGACTCAGCAAAGATGATCATATGCAAATGTACTTTGGCCTCGTTTG ATTGTGCGGGCGGGCATTCGGTGGAACTTTTTCGTGGTTCTCACATCTCC TTACCACCACCATATGGCGCCGTGGGACCATCACCCTGACAACGCAACAT TTCCTTGCCACCTACTGTACTTGTCTTTCGTATTAGTTCTCTGATTCCTC TCTACTAGACCGGGCAGTAATTGTCTCTATAATGAAAGACAAAGACAGTG AAAATGAATTACACACCAGGCGCCCTCTCTGCCATCCTTTCTACCCACAC TTACCCTCCCTCCCTTTTCACTTTACCCCCCAGGACATTGTCGCCCTGCG TCCCTCCCTCCTCGTCGAGCCCATTTCTAACCGGCAATCCCAGAAATTAT GGGGCCTGCTCACTGGCCTGGCTGCGCAAGGCAAATGTTCCTACACCTTC GGTGCCCTTGACCCCGTCCAAGTGATTCAGATGGCGCCGCACGTCTCTAC TATCTACGTGAGTGGGTGGCAGTGCTCGTCTACGGCTTCGACTAGCAATG AGCCCGGGCCAGACTTTGCCGACTACCCCATGGACACGGTATGTTGCCGG AAAGAGTGGAGGGAGGGAAAGAGGACAAGCCCGCAGTAATCAGTACATGA ACTTATCCCTCTTTCCCCTCCTTTCCCTCCCTCCCTGCCATAGGTTCCTA ACAAAGTCCACCAGCTCTTCTCCGCTCAACTATTTCACGATCGTCGCCAG CAAGAAGCACGTGCTCGCATGTCGGAGGCAGCCAAGGCCAGCGAAGCCCC CACGGACTACCTGCGTCCCATCATTGCCGATGGCGACACTGGCCATGGCG GTTTGACAGCCGTGATGAAGCTCACGAAAATGTTCATCGAGCGTGGAGCG GCAGGGATCCATTTCGAGGATCAGAAGCCAGGCACAAAGAAATGCGGCCA CATGGGTGGGAAGGTCCTCGTGGCCATCCAGGAGCACATCGATCGTCTAA CTGCCGCGCGCTTGCAGGCGGATGTGATGGGTGCACAAACCATCATCGTA GCGCGTACCGACGCCGAGGCCGCTTCTTTGCTGGATACGAATATTGATGC TAGGGATCATCCTTTCATTCTGGGGACGACTGTGCCGGGAACTCGGGCAT TGAACGAGGTGATCGCCGAGGCACGTGCCCAGGGGGTGAGCGGGGGGGAG ATGGATAGGATTACGGACCAATGGATGGCGGCGGCTTGCTTGAAGAGGTT CCCGGAGGCAGTATGTGATGCACTGGCGGCCCTGCCGAATGGTGCTTCGA AATTGGCGGCGTGGAAGGCGCAAGCTTACTCCCTGTCTCTGCCCCGGGCG CGGGTGTTGGCGAAGGAGCTGATGGGTGGAAGGGAGGTGTACTTTGATTG GGAGGCCCCCAGAAGTCGGGAGGGCTACTACCGAATCAAGGGTGGGGTGG ACTATTGTGTGGCGCGTGCGGTGGCTTATGCCCCGCATGCGGATTTGATT TGGATGGAGACGGCGAAGCCGGACTTGGCGGAGGCGAGGGAGTTTGCGCA AGGGGTGCGGAGTGTCGTTCCTGGAAAGATGCTGGCGTACAACCTCAGCC CGTCGTTCAATTGGGATGTGGCCGGTTTGACCCCGCAGGAGATGGAGGCT TTCAATTCGAGCCTGGCGCAAATGGGGTTCGTATGGCAGTTTATCACGTT GGCCGGCTTCCATGCAAATGGGCTGATGACCACGTTGTTTGCGAGGGAGT ACGGCAAGCGTGGGGTGGTGGCATATGTGGAGATGATTCAGAGGAAGGAA CGCGAGAATGAGGTGGACATGTTGACGCATCAGAAATGGTCGGGTGCGGC GTTGTTGGATAAGCAGATGCAGACCGTGACGGGAGGGATGAGCTCGACAT CCTCAATGGGGAAGGGGGTGACAGAGTCTCAATTTGGTGCCAAAGTCTCT GTACAGCCAGGAGGGAGTAAGCGCGGCGCGGGGGCCATTTCTCGCCTCTA G
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Coding sequence (CDS) from alignment at chr6:555426..557626-

>NO06G01840.1 ID=NO06G01840.1|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr6:555426..557626- (Nannochloropsis oceanica)
ATGGAGGAGACACGCCTCTACCATGAGGAAGTGGCAGCCACCGAGCGCTT
TTTCCGCAGCCCCCGCTTTGCCCAGACGGCGCGTCCTTACTCTGCTCAGG
ACATTGTCGCCCTGCGTCCCTCCCTCCTCGTCGAGCCCATTTCTAACCGG
CAATCCCAGAAATTATGGGGCCTGCTCACTGGCCTGGCTGCGCAAGGCAA
ATGTTCCTACACCTTCGGTGCCCTTGACCCCGTCCAAGTGATTCAGATGG
CGCCGCACGTCTCTACTATCTACGTGAGTGGGTGGCAGTGCTCGTCTACG
GCTTCGACTAGCAATGAGCCCGGGCCAGACTTTGCCGACTACCCCATGGA
CACGGTTCCTAACAAAGTCCACCAGCTCTTCTCCGCTCAACTATTTCACG
ATCGTCGCCAGCAAGAAGCACGTGCTCGCATGTCGGAGGCAGCCAAGGCC
AGCGAAGCCCCCACGGACTACCTGCGTCCCATCATTGCCGATGGCGACAC
TGGCCATGGCGGTTTGACAGCCGTGATGAAGCTCACGAAAATGTTCATCG
AGCGTGGAGCGGCAGGGATCCATTTCGAGGATCAGAAGCCAGGCACAAAG
AAATGCGGCCACATGGGTGGGAAGGTCCTCGTGGCCATCCAGGAGCACAT
CGATCGTCTAACTGCCGCGCGCTTGCAGGCGGATGTGATGGGTGCACAAA
CCATCATCGTAGCGCGTACCGACGCCGAGGCCGCTTCTTTGCTGGATACG
AATATTGATGCTAGGGATCATCCTTTCATTCTGGGGACGACTGTGCCGGG
AACTCGGGCATTGAACGAGGTGATCGCCGAGGCACGTGCCCAGGGGGTGA
GCGGGGGGGAGATGGATAGGATTACGGACCAATGGATGGCGGCGGCTTGC
TTGAAGAGGTTCCCGGAGGCAGTATGTGATGCACTGGCGGCCCTGCCGAA
TGGTGCTTCGAAATTGGCGGCGTGGAAGGCGCAAGCTTACTCCCTGTCTC
TGCCCCGGGCGCGGGTGTTGGCGAAGGAGCTGATGGGTGGAAGGGAGGTG
TACTTTGATTGGGAGGCCCCCAGAAGTCGGGAGGGCTACTACCGAATCAA
GGGTGGGGTGGACTATTGTGTGGCGCGTGCGGTGGCTTATGCCCCGCATG
CGGATTTGATTTGGATGGAGACGGCGAAGCCGGACTTGGCGGAGGCGAGG
GAGTTTGCGCAAGGGGTGCGGAGTGTCGTTCCTGGAAAGATGCTGGCGTA
CAACCTCAGCCCGTCGTTCAATTGGGATGTGGCCGGTTTGACCCCGCAGG
AGATGGAGGCTTTCAATTCGAGCCTGGCGCAAATGGGGTTCGTATGGCAG
TTTATCACGTTGGCCGGCTTCCATGCAAATGGGCTGATGACCACGTTGTT
TGCGAGGGAGTACGGCAAGCGTGGGGTGGTGGCATATGTGGAGATGATTC
AGAGGAAGGAACGCGAGAATGAGGTGGACATGTTGACGCATCAGAAATGG
TCGGGTGCGGCGTTGTTGGATAAGCAGATGCAGACCGTGACGGGAGGGAT
GAGCTCGACATCCTCAATGGGGAAGGGGGTGACAGAGTCTCAATTTGGTG
CCAAAGTCTCTGTACAGCCAGGAGGGAGTAAGCGCGGCGCGGGGGCCATT
TCTCGCCTCTAG
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Synonyms
Publications