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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:555426..557626 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01840.1 vs.
Match: EWM26223.1 (isocitrate lyase [Nannochloropsis gaditana]) HSP 1 Score: 992.3 bits (2564), Expect = 6.200e-286 Identity = 497/557 (89.23%), Postives = 520/557 (93.36%), Query Frame = 0
Query: 1 MEETRLYHEEVAATERFFRSPRFAQTARPYSAQDIVALRPSLLVEPISNRQSQKLWGLLTGLAAQGKCSYTFGALDPVQVIQMAPHVSTIYVSGWQCSSTASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARMSEAAKASEAPTDYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTKKCGHMGGKVLVAIQEHIDRLTAARLQADVMGAQTIIVARTDAEAASLLDTNIDARDHPFILGTTVPGTRALNEVIAEARAQGVSGGEMDRITDQWMAAACLKRFPEAVCDALAALPNGASKLAAWKAQAYSLSLPRARVLAKELMGGREVYFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDLAEAREFAQGVRSVVPGKMLAYNLSPSFNWDVAGLTPQEMEAFNSSLAQMGFVWQFITLAGFHANGLMTTLFAREYGKRGVVAYVEMIQRKERENEVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTESQFGAK----VSVQPGGSKRGAGAISRL 554
MEETRLYHE+VAATE FFR+PRFAQT RPYSAQD+VALR SLLVEP SNRQ+QKLW LLTGLA QGKCSYTFGALDPVQV+QMAPHVSTIYVSGWQCSSTASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARM++A+K +E P DYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTKKCGHMGGKVLV++QEHIDRLTAARLQADVMGAQTIIVARTD EAASLLDTNIDARDHPFILG TVPGTRALNEV+AEARAQGV+G E+DRITDQW AAA L+RFPEAVCDAL+ LPN A KLA WKAQAY+LSLP+AR LAKELM GREVYFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDL+EAREFAQGVR+ VPGKMLAYNLSPSFNWDVAGL+PQEME FNSSLA MGFVWQFITLAGFHANGLMTT+FAREYGKRGVVAYVEMIQRKERE EVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTE+QFGAK V G AGAISRL
Sbjct: 52 MEETRLYHEDVAATEHFFRNPRFAQTVRPYSAQDVVALRSSLLVEPASNRQAQKLWSLLTGLAGQGKCSYTFGALDPVQVVQMAPHVSTIYVSGWQCSSTASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARMTDASKVAEPPVDYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTKKCGHMGGKVLVSVQEHIDRLTAARLQADVMGAQTIIVARTDGEAASLLDTNIDARDHPFILGATVPGTRALNEVVAEARAQGVTGAELDRITDQWTAAANLRRFPEAVCDALSTLPNPAPKLAVWKAQAYNLSLPQARALAKELM-GREVYFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDLSEAREFAQGVRAAVPGKMLAYNLSPSFNWDVAGLSPQEMEHFNSSLAAMGFVWQFITLAGFHANGLMTTMFAREYGKRGVVAYVEMIQRKEREQEVDMLTHQKWSGAALLDKQMQTVTGGMSSTSSMGKGVTEAQFGAKGPGAAGVSSGAGAARAGAISRL 607
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01840.1 ID=NO06G01840.1|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp ATGGAGGAGACACGCCTCTACCATGAGGAAGTGGCAGCCACCGAGCGCTT TTTCCGCAGCCCCCGCTTTGCCCAGACGGCGCGTCCTTACTCTGCTCAGG ACATTGTCGCCCTGCGTCCCTCCCTCCTCGTCGAGCCCATTTCTAACCGG CAATCCCAGAAATTATGGGGCCTGCTCACTGGCCTGGCTGCGCAAGGCAA ATGTTCCTACACCTTCGGTGCCCTTGACCCCGTCCAAGTGATTCAGATGG CGCCGCACGTCTCTACTATCTACGTGAGTGGGTGGCAGTGCTCGTCTACG GCTTCGACTAGCAATGAGCCCGGGCCAGACTTTGCCGACTACCCCATGGA CACGGTTCCTAACAAAGTCCACCAGCTCTTCTCCGCTCAACTATTTCACG ATCGTCGCCAGCAAGAAGCACGTGCTCGCATGTCGGAGGCAGCCAAGGCC AGCGAAGCCCCCACGGACTACCTGCGTCCCATCATTGCCGATGGCGACAC TGGCCATGGCGGTTTGACAGCCGTGATGAAGCTCACGAAAATGTTCATCG AGCGTGGAGCGGCAGGGATCCATTTCGAGGATCAGAAGCCAGGCACAAAG AAATGCGGCCACATGGGTGGGAAGGTCCTCGTGGCCATCCAGGAGCACAT CGATCGTCTAACTGCCGCGCGCTTGCAGGCGGATGTGATGGGTGCACAAA CCATCATCGTAGCGCGTACCGACGCCGAGGCCGCTTCTTTGCTGGATACG AATATTGATGCTAGGGATCATCCTTTCATTCTGGGGACGACTGTGCCGGG AACTCGGGCATTGAACGAGGTGATCGCCGAGGCACGTGCCCAGGGGGTGA GCGGGGGGGAGATGGATAGGATTACGGACCAATGGATGGCGGCGGCTTGC TTGAAGAGGTTCCCGGAGGCAGTATGTGATGCACTGGCGGCCCTGCCGAA TGGTGCTTCGAAATTGGCGGCGTGGAAGGCGCAAGCTTACTCCCTGTCTC TGCCCCGGGCGCGGGTGTTGGCGAAGGAGCTGATGGGTGGAAGGGAGGTG TACTTTGATTGGGAGGCCCCCAGAAGTCGGGAGGGCTACTACCGAATCAA GGGTGGGGTGGACTATTGTGTGGCGCGTGCGGTGGCTTATGCCCCGCATG CGGATTTGATTTGGATGGAGACGGCGAAGCCGGACTTGGCGGAGGCGAGG GAGTTTGCGCAAGGGGTGCGGAGTGTCGTTCCTGGAAAGATGCTGGCGTA CAACCTCAGCCCGTCGTTCAATTGGGATGTGGCCGGTTTGACCCCGCAGG AGATGGAGGCTTTCAATTCGAGCCTGGCGCAAATGGGGTTCGTATGGCAG TTTATCACGTTGGCCGGCTTCCATGCAAATGGGCTGATGACCACGTTGTT TGCGAGGGAGTACGGCAAGCGTGGGGTGGTGGCATATGTGGAGATGATTC AGAGGAAGGAACGCGAGAATGAGGTGGACATGTTGACGCATCAGAAATGG TCGGGTGCGGCGTTGTTGGATAAGCAGATGCAGACCGTGACGGGAGGGAT GAGCTCGACATCCTCAATGGGGAAGGGGGTGACAGAGTCTCAATTTGGTG CCAAAGTCTCTGTACAGCCAGGAGGGAGTAAGCGCGGCGCGGGGGCCATT TCTCGCCTCTAG back to topprotein sequence of NO06G01840.1 >NO06G01840.1-protein ID=NO06G01840.1-protein|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp MEETRLYHEEVAATERFFRSPRFAQTARPYSAQDIVALRPSLLVEPISNR QSQKLWGLLTGLAAQGKCSYTFGALDPVQVIQMAPHVSTIYVSGWQCSST ASTSNEPGPDFADYPMDTVPNKVHQLFSAQLFHDRRQQEARARMSEAAKA SEAPTDYLRPIIADGDTGHGGLTAVMKLTKMFIERGAAGIHFEDQKPGTK KCGHMGGKVLVAIQEHIDRLTAARLQADVMGAQTIIVARTDAEAASLLDT NIDARDHPFILGTTVPGTRALNEVIAEARAQGVSGGEMDRITDQWMAAAC LKRFPEAVCDALAALPNGASKLAAWKAQAYSLSLPRARVLAKELMGGREV YFDWEAPRSREGYYRIKGGVDYCVARAVAYAPHADLIWMETAKPDLAEAR EFAQGVRSVVPGKMLAYNLSPSFNWDVAGLTPQEMEAFNSSLAQMGFVWQ FITLAGFHANGLMTTLFAREYGKRGVVAYVEMIQRKERENEVDMLTHQKW SGAALLDKQMQTVTGGMSSTSSMGKGVTESQFGAKVSVQPGGSKRGAGAI SRL* back to topmRNA from alignment at chr6:555426..557626- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01840.1 ID=NO06G01840.1|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp|location=Sequence derived from alignment at chr6:555426..557626- (Nannochloropsis oceanica) ATGGAGGAGACACGCCTCTACCATGAGGAAGTGGCAGCCACCGAGCGCTT
TTTCCGCAGCCCCCGCTTTGCCCAGACGGCGCGTCCTTACTCTGCTCAGG
TCAGTCAGTCCTCATGTCCAAGTTGAAGGAGGGCGGGAGGAGTGGGTGTG
AAGAGTGGGTTGACCTTATGTGAACACGCGTGGAGTTGTCTGTGTGAGCC
GTATGACTCAGCAAAGATGATCATATGCAAATGTACTTTGGCCTCGTTTG
ATTGTGCGGGCGGGCATTCGGTGGAACTTTTTCGTGGTTCTCACATCTCC
TTACCACCACCATATGGCGCCGTGGGACCATCACCCTGACAACGCAACAT
TTCCTTGCCACCTACTGTACTTGTCTTTCGTATTAGTTCTCTGATTCCTC
TCTACTAGACCGGGCAGTAATTGTCTCTATAATGAAAGACAAAGACAGTG
AAAATGAATTACACACCAGGCGCCCTCTCTGCCATCCTTTCTACCCACAC
TTACCCTCCCTCCCTTTTCACTTTACCCCCCAGGACATTGTCGCCCTGCG
TCCCTCCCTCCTCGTCGAGCCCATTTCTAACCGGCAATCCCAGAAATTAT
GGGGCCTGCTCACTGGCCTGGCTGCGCAAGGCAAATGTTCCTACACCTTC
GGTGCCCTTGACCCCGTCCAAGTGATTCAGATGGCGCCGCACGTCTCTAC
TATCTACGTGAGTGGGTGGCAGTGCTCGTCTACGGCTTCGACTAGCAATG
AGCCCGGGCCAGACTTTGCCGACTACCCCATGGACACGGTATGTTGCCGG
AAAGAGTGGAGGGAGGGAAAGAGGACAAGCCCGCAGTAATCAGTACATGA
ACTTATCCCTCTTTCCCCTCCTTTCCCTCCCTCCCTGCCATAGGTTCCTA
ACAAAGTCCACCAGCTCTTCTCCGCTCAACTATTTCACGATCGTCGCCAG
CAAGAAGCACGTGCTCGCATGTCGGAGGCAGCCAAGGCCAGCGAAGCCCC
CACGGACTACCTGCGTCCCATCATTGCCGATGGCGACACTGGCCATGGCG
GTTTGACAGCCGTGATGAAGCTCACGAAAATGTTCATCGAGCGTGGAGCG
GCAGGGATCCATTTCGAGGATCAGAAGCCAGGCACAAAGAAATGCGGCCA
CATGGGTGGGAAGGTCCTCGTGGCCATCCAGGAGCACATCGATCGTCTAA
CTGCCGCGCGCTTGCAGGCGGATGTGATGGGTGCACAAACCATCATCGTA
GCGCGTACCGACGCCGAGGCCGCTTCTTTGCTGGATACGAATATTGATGC
TAGGGATCATCCTTTCATTCTGGGGACGACTGTGCCGGGAACTCGGGCAT
TGAACGAGGTGATCGCCGAGGCACGTGCCCAGGGGGTGAGCGGGGGGGAG
ATGGATAGGATTACGGACCAATGGATGGCGGCGGCTTGCTTGAAGAGGTT
CCCGGAGGCAGTATGTGATGCACTGGCGGCCCTGCCGAATGGTGCTTCGA
AATTGGCGGCGTGGAAGGCGCAAGCTTACTCCCTGTCTCTGCCCCGGGCG
CGGGTGTTGGCGAAGGAGCTGATGGGTGGAAGGGAGGTGTACTTTGATTG
GGAGGCCCCCAGAAGTCGGGAGGGCTACTACCGAATCAAGGGTGGGGTGG
ACTATTGTGTGGCGCGTGCGGTGGCTTATGCCCCGCATGCGGATTTGATT
TGGATGGAGACGGCGAAGCCGGACTTGGCGGAGGCGAGGGAGTTTGCGCA
AGGGGTGCGGAGTGTCGTTCCTGGAAAGATGCTGGCGTACAACCTCAGCC
CGTCGTTCAATTGGGATGTGGCCGGTTTGACCCCGCAGGAGATGGAGGCT
TTCAATTCGAGCCTGGCGCAAATGGGGTTCGTATGGCAGTTTATCACGTT
GGCCGGCTTCCATGCAAATGGGCTGATGACCACGTTGTTTGCGAGGGAGT
ACGGCAAGCGTGGGGTGGTGGCATATGTGGAGATGATTCAGAGGAAGGAA
CGCGAGAATGAGGTGGACATGTTGACGCATCAGAAATGGTCGGGTGCGGC
GTTGTTGGATAAGCAGATGCAGACCGTGACGGGAGGGATGAGCTCGACAT
CCTCAATGGGGAAGGGGGTGACAGAGTCTCAATTTGGTGCCAAAGTCTCT
GTACAGCCAGGAGGGAGTAAGCGCGGCGCGGGGGCCATTTCTCGCCTCTA
G back to topCoding sequence (CDS) from alignment at chr6:555426..557626- >NO06G01840.1 ID=NO06G01840.1|Name=NO06G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr6:555426..557626- (Nannochloropsis oceanica) ATGGAGGAGACACGCCTCTACCATGAGGAAGTGGCAGCCACCGAGCGCTT TTTCCGCAGCCCCCGCTTTGCCCAGACGGCGCGTCCTTACTCTGCTCAGG ACATTGTCGCCCTGCGTCCCTCCCTCCTCGTCGAGCCCATTTCTAACCGG CAATCCCAGAAATTATGGGGCCTGCTCACTGGCCTGGCTGCGCAAGGCAA ATGTTCCTACACCTTCGGTGCCCTTGACCCCGTCCAAGTGATTCAGATGG CGCCGCACGTCTCTACTATCTACGTGAGTGGGTGGCAGTGCTCGTCTACG GCTTCGACTAGCAATGAGCCCGGGCCAGACTTTGCCGACTACCCCATGGA CACGGTTCCTAACAAAGTCCACCAGCTCTTCTCCGCTCAACTATTTCACG ATCGTCGCCAGCAAGAAGCACGTGCTCGCATGTCGGAGGCAGCCAAGGCC AGCGAAGCCCCCACGGACTACCTGCGTCCCATCATTGCCGATGGCGACAC TGGCCATGGCGGTTTGACAGCCGTGATGAAGCTCACGAAAATGTTCATCG AGCGTGGAGCGGCAGGGATCCATTTCGAGGATCAGAAGCCAGGCACAAAG AAATGCGGCCACATGGGTGGGAAGGTCCTCGTGGCCATCCAGGAGCACAT CGATCGTCTAACTGCCGCGCGCTTGCAGGCGGATGTGATGGGTGCACAAA CCATCATCGTAGCGCGTACCGACGCCGAGGCCGCTTCTTTGCTGGATACG AATATTGATGCTAGGGATCATCCTTTCATTCTGGGGACGACTGTGCCGGG AACTCGGGCATTGAACGAGGTGATCGCCGAGGCACGTGCCCAGGGGGTGA GCGGGGGGGAGATGGATAGGATTACGGACCAATGGATGGCGGCGGCTTGC TTGAAGAGGTTCCCGGAGGCAGTATGTGATGCACTGGCGGCCCTGCCGAA TGGTGCTTCGAAATTGGCGGCGTGGAAGGCGCAAGCTTACTCCCTGTCTC TGCCCCGGGCGCGGGTGTTGGCGAAGGAGCTGATGGGTGGAAGGGAGGTG TACTTTGATTGGGAGGCCCCCAGAAGTCGGGAGGGCTACTACCGAATCAA GGGTGGGGTGGACTATTGTGTGGCGCGTGCGGTGGCTTATGCCCCGCATG CGGATTTGATTTGGATGGAGACGGCGAAGCCGGACTTGGCGGAGGCGAGG GAGTTTGCGCAAGGGGTGCGGAGTGTCGTTCCTGGAAAGATGCTGGCGTA CAACCTCAGCCCGTCGTTCAATTGGGATGTGGCCGGTTTGACCCCGCAGG AGATGGAGGCTTTCAATTCGAGCCTGGCGCAAATGGGGTTCGTATGGCAG TTTATCACGTTGGCCGGCTTCCATGCAAATGGGCTGATGACCACGTTGTT TGCGAGGGAGTACGGCAAGCGTGGGGTGGTGGCATATGTGGAGATGATTC AGAGGAAGGAACGCGAGAATGAGGTGGACATGTTGACGCATCAGAAATGG TCGGGTGCGGCGTTGTTGGATAAGCAGATGCAGACCGTGACGGGAGGGAT GAGCTCGACATCCTCAATGGGGAAGGGGGTGACAGAGTCTCAATTTGGTG CCAAAGTCTCTGTACAGCCAGGAGGGAGTAAGCGCGGCGCGGGGGCCATT TCTCGCCTCTAG back to top
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