NO06G01830.1, NO06G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01830.1
Unique NameNO06G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length345
Alignment locationchr6:553980..554324 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:553980..554324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G01830.1 vs.
Match: EWM26253.1 (dna polymerase delta catalytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 129.0 bits (323), Expect = 9.300e-27
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0 
Query:    4 PLYKKAEFPPFVLAKKMRLDRTEYIKQVRMPMIRMLQLITPVAEAEELFKPAFRAAPAGKVSSASTISHYFARSTDTHCVNCRARLPAKSVSAEKGH----GGASVP---LCESCK 113
            PLY+KAE PP  L   M LD  EY+KQ+RMPM+RMLQL+ P+AEAEELFKP++RAAPAGKVS  S+ISH+FA  T   C+NCR +LP       K H    GG   P   LC SCK
Sbjct:  804 PLYRKAESPPLALTNNMTLDLMEYLKQIRMPMVRMLQLVMPMAEAEELFKPSYRAAPAGKVSGVSSISHFFAIDTGLRCLNCRTKLPKSREKNTKRHDRSQGGLERPGTRLCASCK 919
The following BLAST results are available for this feature:
BLAST of NO06G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26253.19.300e-2757.76dna polymerase delta catalytic subunit [Nannochlor... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01830NO06G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01830.1NO06G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01830.1.cds1NO06G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01830.1 ID=NO06G01830.1|Name=NO06G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=345bp
ATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGTGCTAGC
GAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGCGGATGC
CCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCCGAGGAA
CTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTCAAGTGC
GTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATTGCGTTA
ACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAGGGCCAC
GGTGGTGCCTCGGTGCCCCTGTGCGAGTCCTGCAAAGGTCCTTGA
back to top

protein sequence of NO06G01830.1

>NO06G01830.1-protein ID=NO06G01830.1-protein|Name=NO06G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MDVPLYKKAEFPPFVLAKKMRLDRTEYIKQVRMPMIRMLQLITPVAEAEE
LFKPAFRAAPAGKVSSASTISHYFARSTDTHCVNCRARLPAKSVSAEKGH
GGASVPLCESCKGP*
back to top

mRNA from alignment at chr6:553980..554324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01830.1 ID=NO06G01830.1|Name=NO06G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=345bp|location=Sequence derived from alignment at chr6:553980..554324+ (Nannochloropsis oceanica)
ATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGTGCTAGC
GAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGCGGATGC
CCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCCGAGGAA
CTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTCAAGTGC
GTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATTGCGTTA
ACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAGGGCCAC
GGTGGTGCCTCGGTGCCCCTGTGCGAGTCCTGCAAAGGTCCTTGA
back to top

Coding sequence (CDS) from alignment at chr6:553980..554324+

>NO06G01830.1 ID=NO06G01830.1|Name=NO06G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at chr6:553980..554324+ (Nannochloropsis oceanica)
ATGGATGTACCCTTGTACAAGAAAGCCGAGTTTCCGCCGTTTGTGCTAGC
GAAGAAAATGAGATTGGATCGGACAGAGTACATAAAGCAGGTGCGGATGC
CCATGATAAGGATGTTGCAGCTTATCACGCCCGTGGCCGAGGCCGAGGAA
CTTTTCAAGCCGGCCTTTCGTGCCGCTCCGGCGGGTAAGGTCTCAAGTGC
GTCGACCATTAGCCACTACTTTGCGCGCAGCACGGACACGCATTGCGTTA
ACTGTCGGGCACGTTTACCTGCGAAATCTGTGAGTGCGGAGAAGGGCCAC
GGTGGTGCCTCGGTGCCCCTGTGCGAGTCCTGCAAAGGTCCTTGA
back to top
Synonyms
Publications