NO06G01700.1, NO06G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01700.1
Unique NameNO06G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2235
Alignment locationchr6:524427..526805 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:524427..526805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01700.1 vs.
Match: EWM26234.1 (Importin-alpha, importin-beta-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 918.7 bits (2373), Expect = 9.000e-264
Identity = 483/571 (84.59%), Postives = 513/571 (89.84%), Query Frame = 0 
Query:    1 MSTPAEKEVQRKKAYKKGIDQDDARRRREETQIQIRKNKREESLNQRRRTDDFGSAVSGGVPGAAGLVTGGFGAVGGVGGAGADASVQQRLEHLPEMVTGITSMDPLMQLEATTQFRKLLSIEKNPPIQHVINAGVVPRLVEFLQRADNPPLQFEAAWALTNIASGTSEHTKVVISEGAVPIFVQLLSSPNDDVREQAVWALGNIAGDSPQCRDLVLGQHAMLPLLQQLHVNSKLSMLRNATWTLSNFCRGKPQPDFEVVKAALPTLAQLIYSPDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCKRLIELLMHPSPTIQTPALRTVGNIVTGDDLQTQIIIGYHALPCLLAMLNHQKKAIRKEACWTISNITAGNKEQIQAVIDHNMVRPLILLLQNAEFDVKKEAAWAISNATSGGTSEQVKHLVEQGCIKPLCDLLVSDDNKIISVALEGLENILKVGEKENKMVGAGYNEMAALVAELGGLQKLEELQNHTSEQLYEKAVSLIERFFGVDEEGAEGGNVGGGQAASSNGTFSFDTGSGGVGGGGGLGEGFGGGSQPPGGNFSFNMG 572
            MSTPA+KEVQRKKAYKKGID DDARRRREETQIQIRKNKREESLNQRRRTDD G+A+  GV  A            G GG  A   + QRL+ +P MV G++SMDP +QLEATTQFRKLLSIEKNPPIQHVINAGVVPRLVEFLQR +NPPLQFEAAWALTNIASGTSEHTKVVISEGAVPIFVQLLSSPNDDVREQAVWALGNIAGDSPQCRDLVLGQHA+LPLLQQLHVNSKL+MLRNATWTLSNFCRGKPQPDFEVVKAALPTLAQLIYSPDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCKRLIELLMHPS TIQTPALRTVGNIVTGDDLQTQIIIGYHALPCLLA+LNH KK I+KEACWT+SNITAGNK+QIQAVID  M+RPLI LL+ A+FDVKKEAAWA+SNATSGGT+EQ+KHLVEQGCIKPLCDLLV+DDNKIISVALEGLENILKVGE+ENKMVGA YNEMAALVAELGGLQKLEELQNH+SEQLYEK+VSLIERFFGV+EE  EGG     QA   NGTFSF TG   +GGG G G G GGG QPP G+F+FNMG
Sbjct:   30 MSTPADKEVQRKKAYKKGIDSDDARRRREETQIQIRKNKREESLNQRRRTDDLGNAL--GVNNA------------GAGGGSAALDMAQRLKEVPAMVAGVSSMDPAVQLEATTQFRKLLSIEKNPPIQHVINAGVVPRLVEFLQRQENPPLQFEAAWALTNIASGTSEHTKVVISEGAVPIFVQLLSSPNDDVREQAVWALGNIAGDSPQCRDLVLGQHALLPLLQQLHVNSKLTMLRNATWTLSNFCRGKPQPDFEVVKAALPTLAQLIYSPDEEVLTDACWALSYLSDGPNEKIQAVIEAGVCKRLIELLMHPSYTIQTPALRTVGNIVTGDDLQTQIIIGYHALPCLLALLNHMKKTIKKEACWTVSNITAGNKDQIQAVIDQGMIRPLIGLLETADFDVKKEAAWALSNATSGGTAEQIKHLVEQGCIKPLCDLLVTDDNKIISVALEGLENILKVGERENKMVGAEYNEMAALVAELGGLQKLEELQNHSSEQLYEKSVSLIERFFGVEEEAVEGG--VASQAPQPNGTFSFSTGE--MGGGPGAGGGVGGGVQPP-GSFNFNMG 581
The following BLAST results are available for this feature:
BLAST of NO06G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26234.19.000e-26484.59Importin-alpha, importin-beta-binding domain prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01700NO06G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01700.1NO06G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01700.1.cds1NO06G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01700.1.cds2NO06G01700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01700.1 ID=NO06G01700.1|Name=NO06G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp
CTTTTCCGGGCAAGCCAAAAGAAGGACTGATCTGTTGCTTGGTCGCCCGC
CTGTCCTTCTCTTCCTACAAGCCTGGCCCCACACTCTTCCCTTGAGTACA
TTTAAATGTCTTGCTTTTGTGCAATAAGTGGGGCAACCAGATGATATAGC
TTGCCAGGTCAAGCTCCTCCTCCTCCAGCCTCCCCCCTTCCATTGCTAAA
ATGCACGAATTCCTCATTCCACGCCCTCTACCTTCCCATCGCACTTCAGG
TATACGACGCCCGGTGCCCCCGCGAGTGGTTAACCACAGCCAGCAGCTAT
GTCAACGCCTGCCGAGAAGGAGGTCCAACGGAAAAAGGCCTACAAGAAGG
GTATCGACCAAGACGATGCCCGCCGCCGCCGAGAAGAGACGCAGATCCAA
ATCCGGAAGAACAAACGAGAGGAGTCGCTCAACCAACGGAGGCGCACTGA
TGACTTCGGTAGTGCCGTCTCGGGGGGCGTGCCCGGGGCAGCAGGGCTTG
TGACGGGGGGGTTCGGGGCGGTGGGAGGGGTGGGAGGAGCTGGGGCCGAT
GCGTCGGTGCAACAGCGTTTGGAGCACTTGCCAGAGATGGTGACGGGCAT
CACTTCGATGGACCCTTTGATGCAATTGGAGGCTACGACACAGTTCCGCA
AGTTGCTTAGTATTGAAAAGAACCCACCAATTCAGCACGTAATCAATGCG
GGGGTGGTTCCGCGGTTGGTGGAATTTCTTCAGCGGGCGGATAATCCTCC
TTTGCAGTTTGAGGCGGCCTGGGCACTAACTAACATTGCGTCGGGGACCT
CGGAGCACACCAAGGTCGTGATTTCAGAGGGGGCAGTGCCCATTTTCGTC
CAGTTGCTAAGCAGTCCCAATGATGACGTGAGGGAGCAGGCGGTATGGGC
GCTAGGCAACATAGCTGGTGACTCTCCGCAGTGCCGGGACCTGGTCCTGG
GACAACATGCAATGCTCCCGCTCTTGCAGCAGCTGCACGTGAACAGCAAG
CTGTCCATGCTGCGAAATGCCACGTGGACGCTTTCGAATTTCTGCCGGGG
GAAGCCCCAGCCGGATTTCGAGGTGGTTAAAGCTGCGCTTCCTACGCTGG
CGCAGCTCATCTATTCACCGGACGAGGAGGTGCTGACAGACGCGTGTTGG
GCGCTGTCTTACCTTTCCGACGGTCCCAACGAGAAGATCCAAGCCGTGAT
CGAGGCGGGGGTATGCAAGCGACTTATTGAATTGCTGATGCATCCCAGCC
CGACCATTCAGACCCCGGCCTTGCGCACTGTGGGCAACATTGTAACGGGA
GACGACCTGCAAACACAAATTATTATTGGCTATCACGCGTTGCCGTGCCT
TCTGGCCATGCTGAACCACCAGAAGAAGGCCATTCGGAAGGAGGCCTGCT
GGACGATCTCAAACATCACAGCGGGGAACAAAGAGCAGATTCAGGCTGTT
ATTGATCACAACATGGTGCGGCCCCTCATTCTGTTGTTGCAAAACGCGGA
GTTCGACGTGAAGAAGGAAGCCGCCTGGGCGATTTCGAATGCGACGAGCG
GTGGGACTTCTGAACAGGTGAAGCATTTGGTGGAGCAGGGGTGCATCAAG
CCCTTATGTGACCTGCTCGTGTCCGACGACAACAAAATTATTTCGGTCGC
CCTGGAGGGGTTGGAAAACATCCTCAAGGTGGGGGAGAAAGAGAACAAGA
TGGTGGGCGCAGGGTACAATGAAATGGCTGCCTTGGTCGCCGAATTGGGA
GGGCTCCAGAAGCTGGAGGAATTGCAGAATCATACCTCGGAGCAGCTGTA
TGAAAAAGCTGTGTCTCTGATTGAGCGGTTTTTCGGCGTGGATGAGGAAG
GGGCGGAGGGAGGGAATGTGGGAGGAGGGCAAGCGGCGTCATCGAATGGG
ACGTTTTCGTTTGATACCGGGAGTGGAGGGGTGGGAGGAGGAGGGGGATT
AGGAGAAGGGTTTGGAGGCGGAAGTCAGCCGCCGGGGGGTAATTTCAGTT
TCAATATGGGGTAGGAAGGGAAGGAGGGAGGGAGGGGAGGAGACTAAGCT
TTGTTGGTGTAGTGATGGAAGAGGGCTGAGTGAAAGAGTGTTTGTGTGTG
AGGGTTGTGCGTGCGTGCGAGAGAGAAAGCGGAAGAGAGAGAGAGAGAGA
AAGAGAGAGAGAGAGAGAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAAAGGTTCTAAGGGAAGGAAAGGT
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protein sequence of NO06G01700.1

>NO06G01700.1-protein ID=NO06G01700.1-protein|Name=NO06G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MSTPAEKEVQRKKAYKKGIDQDDARRRREETQIQIRKNKREESLNQRRRT
DDFGSAVSGGVPGAAGLVTGGFGAVGGVGGAGADASVQQRLEHLPEMVTG
ITSMDPLMQLEATTQFRKLLSIEKNPPIQHVINAGVVPRLVEFLQRADNP
PLQFEAAWALTNIASGTSEHTKVVISEGAVPIFVQLLSSPNDDVREQAVW
ALGNIAGDSPQCRDLVLGQHAMLPLLQQLHVNSKLSMLRNATWTLSNFCR
GKPQPDFEVVKAALPTLAQLIYSPDEEVLTDACWALSYLSDGPNEKIQAV
IEAGVCKRLIELLMHPSPTIQTPALRTVGNIVTGDDLQTQIIIGYHALPC
LLAMLNHQKKAIRKEACWTISNITAGNKEQIQAVIDHNMVRPLILLLQNA
EFDVKKEAAWAISNATSGGTSEQVKHLVEQGCIKPLCDLLVSDDNKIISV
ALEGLENILKVGEKENKMVGAGYNEMAALVAELGGLQKLEELQNHTSEQL
YEKAVSLIERFFGVDEEGAEGGNVGGGQAASSNGTFSFDTGSGGVGGGGG
LGEGFGGGSQPPGGNFSFNMG*
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mRNA from alignment at chr6:524427..526805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01700.1 ID=NO06G01700.1|Name=NO06G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2379bp|location=Sequence derived from alignment at chr6:524427..526805+ (Nannochloropsis oceanica)
CTTTTCCGGGCAAGCCAAAAGAAGGACTGATCTGTTGCTTGGTCGCCCGC
CTGTCCTTCTCTTCCTACAAGCCTGGCCCCACACTCTTCCCTTGAGTACA
TTTAAATGTCTTGCTTTTGTGCAATAAGTGGGGCAACCAGATGATATAGC
TTGCCAGGTCAAGCTCCTCCTCCTCCAGCCTCCCCCCTTCCATTGCTAAA
ATGCACGAATTCCTCATTCCACGCCCTCTACCTTCCCATCGCACTTCAGG
TATACGACGCCCGGTGCCCCCGCGAGTGGTTAACCACAGCCAGCAGCTAT
GTCAACGCCTGCCGAGAAGGAGGTCCAAGTACGTATGGTCGGAGAGATAA
GGGTGTGGTTGGAAGGAGCGAACTTACTATAATCGTGCGGTTCTCCGCAT
CACACTCCCCTTCTTGATGTGCATGTGTGCCTCTCACCTTTAAATCATCC
AACCCCCTCTCGCCTTTAACAGCGGAAAAAGGCCTACAAGAAGGGTATCG
ACCAAGACGATGCCCGCCGCCGCCGAGAAGAGACGCAGATCCAAATCCGG
AAGAACAAACGAGAGGAGTCGCTCAACCAACGGAGGCGCACTGATGACTT
CGGTAGTGCCGTCTCGGGGGGCGTGCCCGGGGCAGCAGGGCTTGTGACGG
GGGGGTTCGGGGCGGTGGGAGGGGTGGGAGGAGCTGGGGCCGATGCGTCG
GTGCAACAGCGTTTGGAGCACTTGCCAGAGATGGTGACGGGCATCACTTC
GATGGACCCTTTGATGCAATTGGAGGCTACGACACAGTTCCGCAAGTTGC
TTAGTATTGAAAAGAACCCACCAATTCAGCACGTAATCAATGCGGGGGTG
GTTCCGCGGTTGGTGGAATTTCTTCAGCGGGCGGATAATCCTCCTTTGCA
GTTTGAGGCGGCCTGGGCACTAACTAACATTGCGTCGGGGACCTCGGAGC
ACACCAAGGTCGTGATTTCAGAGGGGGCAGTGCCCATTTTCGTCCAGTTG
CTAAGCAGTCCCAATGATGACGTGAGGGAGCAGGCGGTATGGGCGCTAGG
CAACATAGCTGGTGACTCTCCGCAGTGCCGGGACCTGGTCCTGGGACAAC
ATGCAATGCTCCCGCTCTTGCAGCAGCTGCACGTGAACAGCAAGCTGTCC
ATGCTGCGAAATGCCACGTGGACGCTTTCGAATTTCTGCCGGGGGAAGCC
CCAGCCGGATTTCGAGGTGGTTAAAGCTGCGCTTCCTACGCTGGCGCAGC
TCATCTATTCACCGGACGAGGAGGTGCTGACAGACGCGTGTTGGGCGCTG
TCTTACCTTTCCGACGGTCCCAACGAGAAGATCCAAGCCGTGATCGAGGC
GGGGGTATGCAAGCGACTTATTGAATTGCTGATGCATCCCAGCCCGACCA
TTCAGACCCCGGCCTTGCGCACTGTGGGCAACATTGTAACGGGAGACGAC
CTGCAAACACAAATTATTATTGGCTATCACGCGTTGCCGTGCCTTCTGGC
CATGCTGAACCACCAGAAGAAGGCCATTCGGAAGGAGGCCTGCTGGACGA
TCTCAAACATCACAGCGGGGAACAAAGAGCAGATTCAGGCTGTTATTGAT
CACAACATGGTGCGGCCCCTCATTCTGTTGTTGCAAAACGCGGAGTTCGA
CGTGAAGAAGGAAGCCGCCTGGGCGATTTCGAATGCGACGAGCGGTGGGA
CTTCTGAACAGGTGAAGCATTTGGTGGAGCAGGGGTGCATCAAGCCCTTA
TGTGACCTGCTCGTGTCCGACGACAACAAAATTATTTCGGTCGCCCTGGA
GGGGTTGGAAAACATCCTCAAGGTGGGGGAGAAAGAGAACAAGATGGTGG
GCGCAGGGTACAATGAAATGGCTGCCTTGGTCGCCGAATTGGGAGGGCTC
CAGAAGCTGGAGGAATTGCAGAATCATACCTCGGAGCAGCTGTATGAAAA
AGCTGTGTCTCTGATTGAGCGGTTTTTCGGCGTGGATGAGGAAGGGGCGG
AGGGAGGGAATGTGGGAGGAGGGCAAGCGGCGTCATCGAATGGGACGTTT
TCGTTTGATACCGGGAGTGGAGGGGTGGGAGGAGGAGGGGGATTAGGAGA
AGGGTTTGGAGGCGGAAGTCAGCCGCCGGGGGGTAATTTCAGTTTCAATA
TGGGGTAGGAAGGGAAGGAGGGAGGGAGGGGAGGAGACTAAGCTTTGTTG
GTGTAGTGATGGAAGAGGGCTGAGTGAAAGAGTGTTTGTGTGTGAGGGTT
GTGCGTGCGTGCGAGAGAGAAAGCGGAAGAGAGAGAGAGAGAGAAAGAGA
GAGAGAGAGAGAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAAAGGTTCTAAGGGAAGGAAAGGT
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Coding sequence (CDS) from alignment at chr6:524427..526805+

>NO06G01700.1 ID=NO06G01700.1|Name=NO06G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1716bp|location=Sequence derived from alignment at chr6:524427..526805+ (Nannochloropsis oceanica)
ATGTCAACGCCTGCCGAGAAGGAGGTCCAACGGAAAAAGGCCTACAAGAA
GGGTATCGACCAAGACGATGCCCGCCGCCGCCGAGAAGAGACGCAGATCC
AAATCCGGAAGAACAAACGAGAGGAGTCGCTCAACCAACGGAGGCGCACT
GATGACTTCGGTAGTGCCGTCTCGGGGGGCGTGCCCGGGGCAGCAGGGCT
TGTGACGGGGGGGTTCGGGGCGGTGGGAGGGGTGGGAGGAGCTGGGGCCG
ATGCGTCGGTGCAACAGCGTTTGGAGCACTTGCCAGAGATGGTGACGGGC
ATCACTTCGATGGACCCTTTGATGCAATTGGAGGCTACGACACAGTTCCG
CAAGTTGCTTAGTATTGAAAAGAACCCACCAATTCAGCACGTAATCAATG
CGGGGGTGGTTCCGCGGTTGGTGGAATTTCTTCAGCGGGCGGATAATCCT
CCTTTGCAGTTTGAGGCGGCCTGGGCACTAACTAACATTGCGTCGGGGAC
CTCGGAGCACACCAAGGTCGTGATTTCAGAGGGGGCAGTGCCCATTTTCG
TCCAGTTGCTAAGCAGTCCCAATGATGACGTGAGGGAGCAGGCGGTATGG
GCGCTAGGCAACATAGCTGGTGACTCTCCGCAGTGCCGGGACCTGGTCCT
GGGACAACATGCAATGCTCCCGCTCTTGCAGCAGCTGCACGTGAACAGCA
AGCTGTCCATGCTGCGAAATGCCACGTGGACGCTTTCGAATTTCTGCCGG
GGGAAGCCCCAGCCGGATTTCGAGGTGGTTAAAGCTGCGCTTCCTACGCT
GGCGCAGCTCATCTATTCACCGGACGAGGAGGTGCTGACAGACGCGTGTT
GGGCGCTGTCTTACCTTTCCGACGGTCCCAACGAGAAGATCCAAGCCGTG
ATCGAGGCGGGGGTATGCAAGCGACTTATTGAATTGCTGATGCATCCCAG
CCCGACCATTCAGACCCCGGCCTTGCGCACTGTGGGCAACATTGTAACGG
GAGACGACCTGCAAACACAAATTATTATTGGCTATCACGCGTTGCCGTGC
CTTCTGGCCATGCTGAACCACCAGAAGAAGGCCATTCGGAAGGAGGCCTG
CTGGACGATCTCAAACATCACAGCGGGGAACAAAGAGCAGATTCAGGCTG
TTATTGATCACAACATGGTGCGGCCCCTCATTCTGTTGTTGCAAAACGCG
GAGTTCGACGTGAAGAAGGAAGCCGCCTGGGCGATTTCGAATGCGACGAG
CGGTGGGACTTCTGAACAGGTGAAGCATTTGGTGGAGCAGGGGTGCATCA
AGCCCTTATGTGACCTGCTCGTGTCCGACGACAACAAAATTATTTCGGTC
GCCCTGGAGGGGTTGGAAAACATCCTCAAGGTGGGGGAGAAAGAGAACAA
GATGGTGGGCGCAGGGTACAATGAAATGGCTGCCTTGGTCGCCGAATTGG
GAGGGCTCCAGAAGCTGGAGGAATTGCAGAATCATACCTCGGAGCAGCTG
TATGAAAAAGCTGTGTCTCTGATTGAGCGGTTTTTCGGCGTGGATGAGGA
AGGGGCGGAGGGAGGGAATGTGGGAGGAGGGCAAGCGGCGTCATCGAATG
GGACGTTTTCGTTTGATACCGGGAGTGGAGGGGTGGGAGGAGGAGGGGGA
TTAGGAGAAGGGTTTGGAGGCGGAAGTCAGCCGCCGGGGGGTAATTTCAG
TTTCAATATGGGGTAG
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Synonyms
Publications