NO06G01670.1, NO06G01670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G01670.1
Unique Name	NO06G01670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2208
Alignment location	chr6:518423..520630 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:518423..520630 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO06G01670.1 vs.

BLAST of NO06G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G01670	NO06G01670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G01670.1	NO06G01670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G01670.1.cds1	NO06G01670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:518423..520630+
coding sequence from alignment at chr6:518423..520630+

mRNA sequence

>NO06G01670.1 ID=NO06G01670.1|Name=NO06G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp
ATGAAGGTATCAGCAGCAGCAGTGAGAAAGAATGAGCCGCGGTTGAATGA
AATCTTTGCCACGGGCAAGAGACAGTGGGTAGAGCAGGGAAAGGAGCAGC
AGCAGCAGCAGGTGCAGCAGCAACAACAACAACGGCAGCACGACCATGAG
AGGATGGTGGTTGATATGCATGGGGATGGGTCGGAAACTGATTCTGATGG
CGACGAGGACGACATATTGGCCGACCATATCGGCGACGCGTGCAAGAAGC
AGCAGCAGCAGCAGGAGAAGGAGGGGCACAGAGATAGGAAAGGGGGGGGG
GAAGTAGGAGAAGGAAACGGAGAAGGAGGAGGGGGGGCTAAAGGTGTAGT
TGTGGTGGGTCCAATGCTCGCGTTTTTGAAACCGAACGTGGAGGAGGGTG
GAGGAGGGAGTGAAGGGAGAGGGGGAGGAGGAGGAGGAGTAGGAGGAGGG
AACAAGATGAAGTCGGTTAGCGGCAGTAGCAAGAGCAGCTACAGCAGCAG
CTTTTTCAGTAAAGAGGGGGGGCTACCACCATTACTTTTTCAATCAGCGT
CTGAAACGGAGGACGAGGAGGATGAGTTGCAGTGGTATCGTCCTTCTCGA
AGGGTGAGCACCAGCAGCACCAGCACCAGCACCAGCAATAGCACCAGCGC
CAGCGCCAGCAGCAGGAGGGATAGTAGTCAGAGGGTGGTCATGGCGTGGC
AGCATCCATTGTACCGGCCTGAGGATGTCTTGACCCCTAGTGCTGCTGCT
CCTGCTGCGTCGCGGGGCAGCGGGCGATGGAAGAAGAAGGGTGGTAGGGA
GAACGAGGAAAAGCAGGAGGAGGAAGAGCAGGAGACAAGGGGGGGAGCTT
CGTTGTTGGTGTCAGGGGTAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCA
GCAGACGAGGAGGCAGGTGTGACGTGTCAGGAAGAGGATACCGAAGAAGG
GAGGGAAGAGGAGGAGGAAGGAAGGAGGAAATCACGGAACCACCAAATGA
GGCTCTCGGTCAATTCCACCCTTGATATGAAGGCGACACCACTGGCCATC
CATTCATCCCTCCTTCCCTCTCCGACTCTTTCTTCTTCTCCTCCTCCTCC
TCCTCCTCATTTTTCTACTCTTTCCAACTTTCAAGTGCAGTTGGAGGAGG
GTGATGAGGACGACGACGAGGACGACGACGAGGACGACGACGAGGACGAC
GACGAGGACAAGGAGGAGAAGCAGCAACAGAACCCGAATTTGTCCATGAT
GTCTTCCACAAAGGACAGAAGGCAGCAGGAAGAGGAGGGGGTAGAAGAGG
GGGAGGGGGAGGGGGAGGACAAGGACAAGGACAAGGAGGAGGACGAGGAC
GAGGACGAGGACGAGGACGAGGACGAGGACGAGGAGGAAAGCAGTGAAGT
CGAGAACGAGGAACACGGAAGCGGGCGCAGAATTGGGGAATGGGGAGAAG
AGATAGAGGATGATGAAAGTAGCGAGGAGGAAGAAGAGGACGAGGAAGAG
GACAAAGAGGAGAGAGGGAGGAGGAAGAGGTTGCGCAGCGGTGCTTTAGT
GGGCGAGAGCGGCAGCAATAAAAGAAGGGAGAAGAAGAAAAATAGCGTGG
GTCCTGATTTTGTGATTCACGATTTGACTTTAAATGATGAGGACGAGGAG
GACGAGGACGAGGAGGATGACATCAAGGCTTTTTCGGACGATGATGAGAA
TGGTGGTTATGGGATAAAGGGGGGAGGGAATGAACGCGTGAAGCCACACC
GGCTGCGAGGATCTAACGGTTGGATAAAGCCGGACTACCCTGAGGTGCTT
CCTCACTTCCGGTCTATTGACAGGTTGAAGGAGGCAGGGATGGAGATTGT
AGACTTCGACTCGATTGGAGGAGGGGGAGGAAGAGAGGGAGGGAAGGGTG
GTGGAAAAGGGGGAGGAGGAGGTGTAATTGATCGACGATATGAGGAACGG
AGGAGGAGGCGGGAGGCCAAGGCGAAAAAGGAAGCGGCGAGCAAGAAGAG
GAGGAAGGGGGGGAAGAAGGGGCAGAGGGGGGAGGGAGGGTGGCGCGGGC
TTGGCAGGGGAGAAGGAAAGCGGTATAGGAGGGATGAGGTGGGAGAGAGG
GAGGGAGACAGTGAGGGAGGGAGGGAGGGACAGAGCAAGGGACGGAGGGA
AGCAGGGACAGAGGGAGGGATGGACATACAAGAACCAGCCCGTACGAGAG
GCACCTAG

protein sequence of NO06G01670.1

>NO06G01670.1-protein ID=NO06G01670.1-protein|Name=NO06G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=736bp
MKVSAAAVRKNEPRLNEIFATGKRQWVEQGKEQQQQQVQQQQQQRQHDHE
RMVVDMHGDGSETDSDGDEDDILADHIGDACKKQQQQQEKEGHRDRKGGG
EVGEGNGEGGGGAKGVVVVGPMLAFLKPNVEEGGGGSEGRGGGGGGVGGG
NKMKSVSGSSKSSYSSSFFSKEGGLPPLLFQSASETEDEEDELQWYRPSR
RVSTSSTSTSTSNSTSASASSRRDSSQRVVMAWQHPLYRPEDVLTPSAAA
PAASRGSGRWKKKGGRENEEKQEEEEQETRGGASLLVSGVAAAAAGAAAA
ADEEAGVTCQEEDTEEGREEEEEGRRKSRNHQMRLSVNSTLDMKATPLAI
HSSLLPSPTLSSSPPPPPPHFSTLSNFQVQLEEGDEDDDEDDDEDDDEDD
DEDKEEKQQQNPNLSMMSSTKDRRQQEEEGVEEGEGEGEDKDKDKEEDED
EDEDEDEDEDEEESSEVENEEHGSGRRIGEWGEEIEDDESSEEEEEDEEE
DKEERGRRKRLRSGALVGESGSNKRREKKKNSVGPDFVIHDLTLNDEDEE
DEDEEDDIKAFSDDDENGGYGIKGGGNERVKPHRLRGSNGWIKPDYPEVL
PHFRSIDRLKEAGMEIVDFDSIGGGGGREGGKGGGKGGGGGVIDRRYEER
RRRREAKAKKEAASKKRRKGGKKGQRGEGGWRGLGRGEGKRYRRDEVGER
EGDSEGGREGQSKGRREAGTEGGMDIQEPARTRGT*

mRNA from alignment at chr6:518423..520630+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G01670.1 ID=NO06G01670.1|Name=NO06G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2208bp|location=Sequence derived from alignment at chr6:518423..520630+ (Nannochloropsis oceanica)
ATGAAGGTATCAGCAGCAGCAGTGAGAAAGAATGAGCCGCGGTTGAATGA
AATCTTTGCCACGGGCAAGAGACAGTGGGTAGAGCAGGGAAAGGAGCAGC
AGCAGCAGCAGGTGCAGCAGCAACAACAACAACGGCAGCACGACCATGAG
AGGATGGTGGTTGATATGCATGGGGATGGGTCGGAAACTGATTCTGATGG
CGACGAGGACGACATATTGGCCGACCATATCGGCGACGCGTGCAAGAAGC
AGCAGCAGCAGCAGGAGAAGGAGGGGCACAGAGATAGGAAAGGGGGGGGG
GAAGTAGGAGAAGGAAACGGAGAAGGAGGAGGGGGGGCTAAAGGTGTAGT
TGTGGTGGGTCCAATGCTCGCGTTTTTGAAACCGAACGTGGAGGAGGGTG
GAGGAGGGAGTGAAGGGAGAGGGGGAGGAGGAGGAGGAGTAGGAGGAGGG
AACAAGATGAAGTCGGTTAGCGGCAGTAGCAAGAGCAGCTACAGCAGCAG
CTTTTTCAGTAAAGAGGGGGGGCTACCACCATTACTTTTTCAATCAGCGT
CTGAAACGGAGGACGAGGAGGATGAGTTGCAGTGGTATCGTCCTTCTCGA
AGGGTGAGCACCAGCAGCACCAGCACCAGCACCAGCAATAGCACCAGCGC
CAGCGCCAGCAGCAGGAGGGATAGTAGTCAGAGGGTGGTCATGGCGTGGC
AGCATCCATTGTACCGGCCTGAGGATGTCTTGACCCCTAGTGCTGCTGCT
CCTGCTGCGTCGCGGGGCAGCGGGCGATGGAAGAAGAAGGGTGGTAGGGA
GAACGAGGAAAAGCAGGAGGAGGAAGAGCAGGAGACAAGGGGGGGAGCTT
CGTTGTTGGTGTCAGGGGTAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCA
GCAGACGAGGAGGCAGGTGTGACGTGTCAGGAAGAGGATACCGAAGAAGG
GAGGGAAGAGGAGGAGGAAGGAAGGAGGAAATCACGGAACCACCAAATGA
GGCTCTCGGTCAATTCCACCCTTGATATGAAGGCGACACCACTGGCCATC
CATTCATCCCTCCTTCCCTCTCCGACTCTTTCTTCTTCTCCTCCTCCTCC
TCCTCCTCATTTTTCTACTCTTTCCAACTTTCAAGTGCAGTTGGAGGAGG
GTGATGAGGACGACGACGAGGACGACGACGAGGACGACGACGAGGACGAC
GACGAGGACAAGGAGGAGAAGCAGCAACAGAACCCGAATTTGTCCATGAT
GTCTTCCACAAAGGACAGAAGGCAGCAGGAAGAGGAGGGGGTAGAAGAGG
GGGAGGGGGAGGGGGAGGACAAGGACAAGGACAAGGAGGAGGACGAGGAC
GAGGACGAGGACGAGGACGAGGACGAGGACGAGGAGGAAAGCAGTGAAGT
CGAGAACGAGGAACACGGAAGCGGGCGCAGAATTGGGGAATGGGGAGAAG
AGATAGAGGATGATGAAAGTAGCGAGGAGGAAGAAGAGGACGAGGAAGAG
GACAAAGAGGAGAGAGGGAGGAGGAAGAGGTTGCGCAGCGGTGCTTTAGT
GGGCGAGAGCGGCAGCAATAAAAGAAGGGAGAAGAAGAAAAATAGCGTGG
GTCCTGATTTTGTGATTCACGATTTGACTTTAAATGATGAGGACGAGGAG
GACGAGGACGAGGAGGATGACATCAAGGCTTTTTCGGACGATGATGAGAA
TGGTGGTTATGGGATAAAGGGGGGAGGGAATGAACGCGTGAAGCCACACC
GGCTGCGAGGATCTAACGGTTGGATAAAGCCGGACTACCCTGAGGTGCTT
CCTCACTTCCGGTCTATTGACAGGTTGAAGGAGGCAGGGATGGAGATTGT
AGACTTCGACTCGATTGGAGGAGGGGGAGGAAGAGAGGGAGGGAAGGGTG
GTGGAAAAGGGGGAGGAGGAGGTGTAATTGATCGACGATATGAGGAACGG
AGGAGGAGGCGGGAGGCCAAGGCGAAAAAGGAAGCGGCGAGCAAGAAGAG
GAGGAAGGGGGGGAAGAAGGGGCAGAGGGGGGAGGGAGGGTGGCGCGGGC
TTGGCAGGGGAGAAGGAAAGCGGTATAGGAGGGATGAGGTGGGAGAGAGG
GAGGGAGACAGTGAGGGAGGGAGGGAGGGACAGAGCAAGGGACGGAGGGA
AGCAGGGACAGAGGGAGGGATGGACATACAAGAACCAGCCCGTACGAGAG
GCACCTAG

Coding sequence (CDS) from alignment at chr6:518423..520630+

>NO06G01670.1 ID=NO06G01670.1|Name=NO06G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at chr6:518423..520630+ (Nannochloropsis oceanica)
ATGAAGGTATCAGCAGCAGCAGTGAGAAAGAATGAGCCGCGGTTGAATGA
AATCTTTGCCACGGGCAAGAGACAGTGGGTAGAGCAGGGAAAGGAGCAGC
AGCAGCAGCAGGTGCAGCAGCAACAACAACAACGGCAGCACGACCATGAG
AGGATGGTGGTTGATATGCATGGGGATGGGTCGGAAACTGATTCTGATGG
CGACGAGGACGACATATTGGCCGACCATATCGGCGACGCGTGCAAGAAGC
AGCAGCAGCAGCAGGAGAAGGAGGGGCACAGAGATAGGAAAGGGGGGGGG
GAAGTAGGAGAAGGAAACGGAGAAGGAGGAGGGGGGGCTAAAGGTGTAGT
TGTGGTGGGTCCAATGCTCGCGTTTTTGAAACCGAACGTGGAGGAGGGTG
GAGGAGGGAGTGAAGGGAGAGGGGGAGGAGGAGGAGGAGTAGGAGGAGGG
AACAAGATGAAGTCGGTTAGCGGCAGTAGCAAGAGCAGCTACAGCAGCAG
CTTTTTCAGTAAAGAGGGGGGGCTACCACCATTACTTTTTCAATCAGCGT
CTGAAACGGAGGACGAGGAGGATGAGTTGCAGTGGTATCGTCCTTCTCGA
AGGGTGAGCACCAGCAGCACCAGCACCAGCACCAGCAATAGCACCAGCGC
CAGCGCCAGCAGCAGGAGGGATAGTAGTCAGAGGGTGGTCATGGCGTGGC
AGCATCCATTGTACCGGCCTGAGGATGTCTTGACCCCTAGTGCTGCTGCT
CCTGCTGCGTCGCGGGGCAGCGGGCGATGGAAGAAGAAGGGTGGTAGGGA
GAACGAGGAAAAGCAGGAGGAGGAAGAGCAGGAGACAAGGGGGGGAGCTT
CGTTGTTGGTGTCAGGGGTAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCA
GCAGACGAGGAGGCAGGTGTGACGTGTCAGGAAGAGGATACCGAAGAAGG
GAGGGAAGAGGAGGAGGAAGGAAGGAGGAAATCACGGAACCACCAAATGA
GGCTCTCGGTCAATTCCACCCTTGATATGAAGGCGACACCACTGGCCATC
CATTCATCCCTCCTTCCCTCTCCGACTCTTTCTTCTTCTCCTCCTCCTCC
TCCTCCTCATTTTTCTACTCTTTCCAACTTTCAAGTGCAGTTGGAGGAGG
GTGATGAGGACGACGACGAGGACGACGACGAGGACGACGACGAGGACGAC
GACGAGGACAAGGAGGAGAAGCAGCAACAGAACCCGAATTTGTCCATGAT
GTCTTCCACAAAGGACAGAAGGCAGCAGGAAGAGGAGGGGGTAGAAGAGG
GGGAGGGGGAGGGGGAGGACAAGGACAAGGACAAGGAGGAGGACGAGGAC
GAGGACGAGGACGAGGACGAGGACGAGGACGAGGAGGAAAGCAGTGAAGT
CGAGAACGAGGAACACGGAAGCGGGCGCAGAATTGGGGAATGGGGAGAAG
AGATAGAGGATGATGAAAGTAGCGAGGAGGAAGAAGAGGACGAGGAAGAG
GACAAAGAGGAGAGAGGGAGGAGGAAGAGGTTGCGCAGCGGTGCTTTAGT
GGGCGAGAGCGGCAGCAATAAAAGAAGGGAGAAGAAGAAAAATAGCGTGG
GTCCTGATTTTGTGATTCACGATTTGACTTTAAATGATGAGGACGAGGAG
GACGAGGACGAGGAGGATGACATCAAGGCTTTTTCGGACGATGATGAGAA
TGGTGGTTATGGGATAAAGGGGGGAGGGAATGAACGCGTGAAGCCACACC
GGCTGCGAGGATCTAACGGTTGGATAAAGCCGGACTACCCTGAGGTGCTT
CCTCACTTCCGGTCTATTGACAGGTTGAAGGAGGCAGGGATGGAGATTGT
AGACTTCGACTCGATTGGAGGAGGGGGAGGAAGAGAGGGAGGGAAGGGTG
GTGGAAAAGGGGGAGGAGGAGGTGTAATTGATCGACGATATGAGGAACGG
AGGAGGAGGCGGGAGGCCAAGGCGAAAAAGGAAGCGGCGAGCAAGAAGAG
GAGGAAGGGGGGGAAGAAGGGGCAGAGGGGGGAGGGAGGGTGGCGCGGGC
TTGGCAGGGGAGAAGGAAAGCGGTATAGGAGGGATGAGGTGGGAGAGAGG
GAGGGAGACAGTGAGGGAGGGAGGGAGGGACAGAGCAAGGGACGGAGGGA
AGCAGGGACAGAGGGAGGGATGGACATACAAGAACCAGCCCGTACGAGAG
GCACCTAG

Synonyms

Publications