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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:514165..516106 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01650.1 vs.
Match: EWM26193.1 (membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 726.9 bits (1875), Expect = 5.100e-206 Identity = 377/580 (65.00%), Postives = 448/580 (77.24%), Query Frame = 0
Query: 1 MAFKRYVAIVGSSGGGGAAQSGSDVYGLLVALKRELAQCEVGLAMVQLVECSAPLDFAASQTPTVLWTVNPQTEQIERSFNGTLDGVNERAQIVDRLISRMIIGDEKQRIDGLISISSDPDAVNQYTFLAAAKTQIPVVGTGGTSLGKAAGELDCNVVGNSGGSVSTTIETKALSFTASLAGFWKLTYEPSVPRPRLNGILGACLPAFVAVAIANKLLRDLQGARFLNWWTSSSGGGAVGGPPLDVSGVLPVLASVITASQVAQMGETAALAGVVAGVLACSGSGGSRSSSSEEADGTVLGGIMTGWLAGWLCRWFLVKTARSLWVPATASSIITAGATGLIAALVGRLIFRRPCAWLSEGVQKALFFFEAASPLVASSSSSSGRNS-RKISVFQWLVALVVGPGMTYGSQVGGYHLVFLPLILFEMEKGQPSFLGAVDWCSLCLISGGITTATWLLPLPTSHPSNGGGDPRPLAKRGAYTNLMWGDFVEACYPFFQGQMFLTGLVYLASWLSTALLLRQGGRSSAYLPVVLSWWLGSEGGREGENEGGWECRVWWASLIAFGLPFVAVIVRNGWVRMMG 580
M FK+YVA++GSSGGGGA+ +GSDVYGLL+AL++ELAQCEVG+A+ QLV+CS PLDFAASQTPTVLWT N +T Q+ERS+ GTL+ VNERAQ++DR ISRMIIGDEKQR+DGLISIS+DP+AVNQ+TFLAAAK +IPVVGTGGTSLGKAAG+L C+VVGNSGGSVSTTIETKALSFTASLA FW L Y+P + P+L+ IL ACLP FVAV +A + R +WW + G D++ LPV+ +V+TASQV ++GE L+GV+AG+LAC G+GGS + E+ TVL G +TG LAGWL R LV TA+SLWVPATASSIITAGA GL A L GRL+ RRPCAW+S+ + L + EA P+V + + GR IS FQW +AL VGPG+TYGSQ G YH+V LPLILFEME+G PSFLGAVD+CSLCL+S G+T ATWLLPLP HPSNGG DPRPLA+RGAYTNL+WGDFVEACYP Q +FLTG VY AS LSTA+LL++GGRSSAY+P LS WL S EGE W ASLIAFGLPF A ++RNGW R G
Sbjct: 1 MPFKKYVAVIGSSGGGGASHAGSDVYGLLIALRQELAQCEVGIAVAQLVDCSTPLDFAASQTPTVLWTFNTETNQVERSYEGTLEAVNERAQLMDRAISRMIIGDEKQRVDGLISISADPEAVNQFTFLAAAKAKIPVVGTGGTSLGKAAGDLGCDVVGNSGGSVSTTIETKALSFTASLASFWGLPYDPLISYPQLHSILAACLPVFVAVVLAKEAWRKALALGISDWWLARQTHATFTGLS-DIANALPVVVAVVTASQVGRLGEAGLLSGVLAGMLAC-GAGGSEEGTGSES--TVLAGALTGLLAGWLSRQLLVATAKSLWVPATASSIITAGAAGLSAGLGGRLLIRRPCAWVSDTFRSILLYLEA--PVVVGNDAGGGRGGVAGISAFQWALALAVGPGVTYGSQRGLYHVVLLPLILFEMERGDPSFLGAVDYCSLCLVSAGVTVATWLLPLPPDHPSNGGRDPRPLARRGAYTNLVWGDFVEACYPLVQHSVFLTGAVYAASTLSTAVLLQEGGRSSAYMPAPLSLWLASH-VEEGEGS------AWRASLIAFGLPFSATLLRNGWHRFGG 567
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01650.1 ID=NO06G01650.1|Name=NO06G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp
AACATCACACAGGGTACAGAGCAGCACAGAGCATGGCATTCAAGCGATAC
GTCGCCATCGTGGGCAGCAGCGGTGGGGGGGGCGCTGCTCAATCAGGCAG
CGATGTCTACGGGCTCCTAGTCGCCTTAAAACGGGAGCTCGCGCAGTGTG
AGGTCGGGCTAGCCATGGTTCAGCTCGTTGAATGCAGCGCCCCGCTCGAC
TTTGCCGCCTCGCAAACCCCCACCGTCCTCTGGACGGTCAACCCACAAAC
CGAACAAATAGAGCGTTCCTTTAACGGTACCCTAGACGGAGTGAATGAAC
GTGCACAAATTGTCGATCGCCTCATATCCCGCATGATAATTGGTGACGAA
AAACAGCGGATAGATGGTCTCATCAGCATCAGCAGTGACCCGGACGCTGT
AAACCAATATACCTTCCTCGCAGCAGCAAAGACACAGATCCCTGTTGTAG
GTACTGGAGGCACGTCTTTGGGCAAGGCTGCGGGTGAATTGGACTGTAAT
GTGGTCGGAAACAGTGGTGGGTCAGTCTCGACAACAATAGAGACAAAGGC
CTTGAGTTTTACGGCTAGTCTTGCCGGATTTTGGAAATTGACTTACGAAC
CTTCAGTACCAAGGCCGCGTTTGAATGGGATTTTGGGAGCATGTTTGCCA
GCGTTTGTGGCAGTGGCAATTGCGAATAAACTGTTGAGAGATTTGCAGGG
AGCTCGTTTCTTGAATTGGTGGACAAGTAGTAGTGGTGGTGGTGCAGTTG
GAGGTCCGCCGTTGGATGTTTCTGGAGTCTTGCCGGTGCTTGCTTCAGTC
ATAACAGCATCGCAGGTGGCTCAAATGGGAGAGACTGCCGCTTTGGCTGG
GGTGGTGGCTGGGGTGCTTGCCTGTAGTGGCAGCGGCGGGAGCCGGAGCA
GCAGCAGCGAAGAAGCAGATGGCACGGTGCTTGGGGGAATTATGACTGGA
TGGTTGGCGGGGTGGTTATGTCGGTGGTTTTTGGTTAAGACGGCAAGATC
GTTGTGGGTGCCGGCGACTGCGTCTTCCATCATCACAGCTGGGGCAACGG
GCCTGATCGCGGCTTTGGTAGGAAGGTTAATATTCAGAAGGCCGTGTGCC
TGGCTGAGTGAGGGTGTGCAAAAGGCGTTGTTTTTTTTCGAAGCGGCTTC
TCCCCTTGTCGCAAGCAGCAGTAGCAGTAGCGGCAGAAACAGCAGGAAAA
TAAGTGTTTTCCAATGGCTGGTGGCGTTGGTGGTGGGACCAGGTATGACC
TACGGGAGTCAAGTTGGGGGTTACCACCTCGTCTTCCTCCCCCTCATCCT
CTTCGAGATGGAAAAAGGACAGCCCTCCTTCCTCGGTGCGGTGGACTGGT
GTTCACTTTGTTTGATCTCGGGAGGAATAACGACTGCGACGTGGCTGTTG
CCTCTGCCGACGTCTCATCCTAGCAACGGAGGAGGGGACCCACGGCCATT
GGCAAAGAGGGGGGCGTACACAAACTTAATGTGGGGGGACTTTGTGGAGG
CATGTTATCCTTTTTTTCAGGGGCAGATGTTTCTGACGGGGCTGGTATAT
CTGGCTAGTTGGTTGTCGACGGCGTTGTTGCTGAGGCAAGGAGGGAGGAG
CAGTGCTTACTTACCGGTGGTTTTGAGTTGGTGGTTGGGATCTGAGGGAG
GGAGGGAGGGAGAAAATGAGGGAGGATGGGAGTGTAGGGTGTGGTGGGCG
TCGCTGATTGCATTTGGGTTACCATTTGTAGCCGTTATAGTGAGGAATGG
GTGGGTGAGGATGATGGGATGA back to topprotein sequence of NO06G01650.1 >NO06G01650.1-protein ID=NO06G01650.1-protein|Name=NO06G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=580bp
MAFKRYVAIVGSSGGGGAAQSGSDVYGLLVALKRELAQCEVGLAMVQLVE
CSAPLDFAASQTPTVLWTVNPQTEQIERSFNGTLDGVNERAQIVDRLISR
MIIGDEKQRIDGLISISSDPDAVNQYTFLAAAKTQIPVVGTGGTSLGKAA
GELDCNVVGNSGGSVSTTIETKALSFTASLAGFWKLTYEPSVPRPRLNGI
LGACLPAFVAVAIANKLLRDLQGARFLNWWTSSSGGGAVGGPPLDVSGVL
PVLASVITASQVAQMGETAALAGVVAGVLACSGSGGSRSSSSEEADGTVL
GGIMTGWLAGWLCRWFLVKTARSLWVPATASSIITAGATGLIAALVGRLI
FRRPCAWLSEGVQKALFFFEAASPLVASSSSSSGRNSRKISVFQWLVALV
VGPGMTYGSQVGGYHLVFLPLILFEMEKGQPSFLGAVDWCSLCLISGGIT
TATWLLPLPTSHPSNGGGDPRPLAKRGAYTNLMWGDFVEACYPFFQGQMF
LTGLVYLASWLSTALLLRQGGRSSAYLPVVLSWWLGSEGGREGENEGGWE
CRVWWASLIAFGLPFVAVIVRNGWVRMMG* back to topmRNA from alignment at chr6:514165..516106- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01650.1 ID=NO06G01650.1|Name=NO06G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1942bp|location=Sequence derived from alignment at chr6:514165..516106- (Nannochloropsis oceanica)
AACATCACACAGGGTACAGAGCAGCACAGAGCATGGCATTCAAGCGATAC
GTCGCCATCGTGGGCAGCAGCGGTGGGGGGGGCGCTGCTCAATCAGGCAG
CGATGTCTACGGGCTCCTAGTCGCCTTAAAACGGGAGCTCGCGCAGTGTG
AGGTCGGGCTAGCCATGGTTCAGGTTCGTTTTGGGGTGGTGTGGATGTGC
TAGACGGGACGGGAGGAGGGAAATATCTGCCACTACGAACTGTAGGCGGG
ACCAACAGCTTCCCCAATCGAACCGAGTCTAGAACATGCTTCTCTTATGC
TCGAATTTATACCAATCTCCTGTCTATCCGTCTCCTCACATAGCTCGTTG
AATGCAGCGCCCCGCTCGACTTTGCCGCCTCGCAAACCCCCACCGTCCTC
TGGACGGTCAACCCACAAACCGAACAAATAGAGCGTTCCTTTAACGGTAC
CCTAGACGGAGTGAATGAACGTGCACAAATTGTCGATCGCCTCATATCCC
GCATGATAATTGGTGACGAAAAACAGCGGATAGATGGTCTCATCAGCATC
AGCAGTGACCCGGACGCTGTAAACCAATATACCTTCCTCGCAGCAGCAAA
GACACAGATCCCTGTTGTAGGTACTGGAGGCACGTCTTTGGGCAAGGCTG
CGGGTGAATTGGACTGTAATGTGGTCGGAAACAGTGGTGGGTCAGTCTCG
ACAACAATAGAGACAAAGGCCTTGAGTTTTACGGCTAGTCTTGCCGGATT
TTGGAAATTGACTTACGAACCTTCAGTACCAAGGCCGCGTTTGAATGGGA
TTTTGGGAGCATGTTTGCCAGCGTTTGTGGCAGTGGCAATTGCGAATAAA
CTGTTGAGAGATTTGCAGGGAGCTCGTTTCTTGAATTGGTGGACAAGTAG
TAGTGGTGGTGGTGCAGTTGGAGGTCCGCCGTTGGATGTTTCTGGAGTCT
TGCCGGTGCTTGCTTCAGTCATAACAGCATCGCAGGTGGCTCAAATGGGA
GAGACTGCCGCTTTGGCTGGGGTGGTGGCTGGGGTGCTTGCCTGTAGTGG
CAGCGGCGGGAGCCGGAGCAGCAGCAGCGAAGAAGCAGATGGCACGGTGC
TTGGGGGAATTATGACTGGATGGTTGGCGGGGTGGTTATGTCGGTGGTTT
TTGGTTAAGACGGCAAGATCGTTGTGGGTGCCGGCGACTGCGTCTTCCAT
CATCACAGCTGGGGCAACGGGCCTGATCGCGGCTTTGGTAGGAAGGTTAA
TATTCAGAAGGCCGTGTGCCTGGCTGAGTGAGGGTGTGCAAAAGGCGTTG
TTTTTTTTCGAAGCGGCTTCTCCCCTTGTCGCAAGCAGCAGTAGCAGTAG
CGGCAGAAACAGCAGGAAAATAAGTGTTTTCCAATGGCTGGTGGCGTTGG
TGGTGGGACCAGGTATGACCTACGGGAGTCAAGTTGGGGGTTACCACCTC
GTCTTCCTCCCCCTCATCCTCTTCGAGATGGAAAAAGGACAGCCCTCCTT
CCTCGGTGCGGTGGACTGGTGTTCACTTTGTTTGATCTCGGGAGGAATAA
CGACTGCGACGTGGCTGTTGCCTCTGCCGACGTCTCATCCTAGCAACGGA
GGAGGGGACCCACGGCCATTGGCAAAGAGGGGGGCGTACACAAACTTAAT
GTGGGGGGACTTTGTGGAGGCATGTTATCCTTTTTTTCAGGGGCAGATGT
TTCTGACGGGGCTGGTATATCTGGCTAGTTGGTTGTCGACGGCGTTGTTG
CTGAGGCAAGGAGGGAGGAGCAGTGCTTACTTACCGGTGGTTTTGAGTTG
GTGGTTGGGATCTGAGGGAGGGAGGGAGGGAGAAAATGAGGGAGGATGGG
AGTGTAGGGTGTGGTGGGCGTCGCTGATTGCATTTGGGTTACCATTTGTA
GCCGTTATAGTGAGGAATGGGTGGGTGAGGATGATGGGATGA back to topCoding sequence (CDS) from alignment at chr6:514165..516106- >NO06G01650.1 ID=NO06G01650.1|Name=NO06G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at chr6:514165..516106- (Nannochloropsis oceanica)
ATGGCATTCAAGCGATACGTCGCCATCGTGGGCAGCAGCGGTGGGGGGGG
CGCTGCTCAATCAGGCAGCGATGTCTACGGGCTCCTAGTCGCCTTAAAAC
GGGAGCTCGCGCAGTGTGAGGTCGGGCTAGCCATGGTTCAGCTCGTTGAA
TGCAGCGCCCCGCTCGACTTTGCCGCCTCGCAAACCCCCACCGTCCTCTG
GACGGTCAACCCACAAACCGAACAAATAGAGCGTTCCTTTAACGGTACCC
TAGACGGAGTGAATGAACGTGCACAAATTGTCGATCGCCTCATATCCCGC
ATGATAATTGGTGACGAAAAACAGCGGATAGATGGTCTCATCAGCATCAG
CAGTGACCCGGACGCTGTAAACCAATATACCTTCCTCGCAGCAGCAAAGA
CACAGATCCCTGTTGTAGGTACTGGAGGCACGTCTTTGGGCAAGGCTGCG
GGTGAATTGGACTGTAATGTGGTCGGAAACAGTGGTGGGTCAGTCTCGAC
AACAATAGAGACAAAGGCCTTGAGTTTTACGGCTAGTCTTGCCGGATTTT
GGAAATTGACTTACGAACCTTCAGTACCAAGGCCGCGTTTGAATGGGATT
TTGGGAGCATGTTTGCCAGCGTTTGTGGCAGTGGCAATTGCGAATAAACT
GTTGAGAGATTTGCAGGGAGCTCGTTTCTTGAATTGGTGGACAAGTAGTA
GTGGTGGTGGTGCAGTTGGAGGTCCGCCGTTGGATGTTTCTGGAGTCTTG
CCGGTGCTTGCTTCAGTCATAACAGCATCGCAGGTGGCTCAAATGGGAGA
GACTGCCGCTTTGGCTGGGGTGGTGGCTGGGGTGCTTGCCTGTAGTGGCA
GCGGCGGGAGCCGGAGCAGCAGCAGCGAAGAAGCAGATGGCACGGTGCTT
GGGGGAATTATGACTGGATGGTTGGCGGGGTGGTTATGTCGGTGGTTTTT
GGTTAAGACGGCAAGATCGTTGTGGGTGCCGGCGACTGCGTCTTCCATCA
TCACAGCTGGGGCAACGGGCCTGATCGCGGCTTTGGTAGGAAGGTTAATA
TTCAGAAGGCCGTGTGCCTGGCTGAGTGAGGGTGTGCAAAAGGCGTTGTT
TTTTTTCGAAGCGGCTTCTCCCCTTGTCGCAAGCAGCAGTAGCAGTAGCG
GCAGAAACAGCAGGAAAATAAGTGTTTTCCAATGGCTGGTGGCGTTGGTG
GTGGGACCAGGTATGACCTACGGGAGTCAAGTTGGGGGTTACCACCTCGT
CTTCCTCCCCCTCATCCTCTTCGAGATGGAAAAAGGACAGCCCTCCTTCC
TCGGTGCGGTGGACTGGTGTTCACTTTGTTTGATCTCGGGAGGAATAACG
ACTGCGACGTGGCTGTTGCCTCTGCCGACGTCTCATCCTAGCAACGGAGG
AGGGGACCCACGGCCATTGGCAAAGAGGGGGGCGTACACAAACTTAATGT
GGGGGGACTTTGTGGAGGCATGTTATCCTTTTTTTCAGGGGCAGATGTTT
CTGACGGGGCTGGTATATCTGGCTAGTTGGTTGTCGACGGCGTTGTTGCT
GAGGCAAGGAGGGAGGAGCAGTGCTTACTTACCGGTGGTTTTGAGTTGGT
GGTTGGGATCTGAGGGAGGGAGGGAGGGAGAAAATGAGGGAGGATGGGAG
TGTAGGGTGTGGTGGGCGTCGCTGATTGCATTTGGGTTACCATTTGTAGC
CGTTATAGTGAGGAATGGGTGGGTGAGGATGATGGGATGA back to top
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