NO06G01630.1, NO06G01630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01630.1
Unique NameNO06G01630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1689
Alignment locationchr6:506534..508222 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:506534..508222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01630.1 vs.
Match: EWM26183.1 (pyruvate kinase [Nannochloropsis gaditana])

HSP 1 Score: 986.9 bits (2550), Expect = 2.600e-284
Identity = 513/562 (91.28%), Postives = 533/562 (94.84%), Query Frame = 0 
Query:    1 MLGLLAATTALCASTTSAFVMPVRPLTLAARPSSLTSSSSSRSCVGIPLRMVSHPDVDNEYKRKLSEQRRWTKSTKQLATLGPVSNTEEMIEKLFLAGVDVFRLNFSHGAHEEKKALLDIIRGLEVKFNHPIAILADLQGPKLRVGTFEHDKVILVDGQSFRFDLSDEPGDSMRVNLPHPEIINTLQNGDTLLLDDGKLRMTVTKKGEGFVDTLVNVGGALSNRKGVNTPSVVLPISALTPKDRKDLDFALSIGVDWVALSFVQQPQDIAELRTLVGNKAKIMAKLEKPSAVQEGVVDDIIMLSDGIMVARGDLGVEMRPEDVPVIQKQIIEKCRKYGRPVVVATQMLESMIESPTPTRAEASDVATAIYDGADAIMLSAESAAGKFPVESVMMQQRVILRVEEDKAYRKNLARSNPQRLEKSATDAITNAAREIAATIGACALVVFTARGTTVLRASMGRPGVPILAITPEIETARALALTWGVYPAAVETRAEHETFPDVLRKICSVATDKGLANRPDDLLVVTAGLPFGSPGVANVIRVVPASGPEDWVVGGDKNLNTI 563
            M  L  AT  +CAS ++AFVMP+RP T AAR  S +  SS R     PLRMV+HPDVDNEYKRKLSEQRRWTKSTKQLATLGPVSNTEEMIEKLFLAGVDVFRLNFSHGAHEEKKAL DIIRGLEVK+NHPIAILADLQGPKLRVGTF+HDKVILVDGQ+FRFDLSDEPGD+ RVNLPHPEIINTLQ GDTLLLDDGKLRMTV+ KGEG+VDTLVNVGGALSNRKGVNTPSVVLPIS LTPKDRKDL+FALSIGVDWVALSFVQQ QDIAELRTLVGNKAKIMAKLEKPSAV+EGVVDDIIMLSDGIMVARGDLGVEMRPEDVPVIQKQII+KCRKYGRPVVVATQMLESMIESPTPTRAEASDVATAIYDGADAIMLSAESAAGK+PV++VMMQQRVILRVEEDKAYRKNLARSNP R+EKSATDAITNAAREIAATIGACALVVFTARGTTVLRASMGRPGVPILAITPEIETAR+LALTWGVYPAAVETRAEHETFPDVL KICSVA DKGLANRPDDLLVVTAGLPFGSPGVANVIRVVPASGPEDWVVGGDKNLNTI
Sbjct:    1 MQTLFLATLVICASVSTAFVMPLRPCTQAARAGSQSRISSIRGIRSRPLRMVTHPDVDNEYKRKLSEQRRWTKSTKQLATLGPVSNTEEMIEKLFLAGVDVFRLNFSHGAHEEKKALFDIIRGLEVKYNHPIAILADLQGPKLRVGTFDHDKVILVDGQAFRFDLSDEPGDAARVNLPHPEIINTLQVGDTLLLDDGKLRMTVSGKGEGYVDTLVNVGGALSNRKGVNTPSVVLPISPLTPKDRKDLEFALSIGVDWVALSFVQQAQDIAELRTLVGNKAKIMAKLEKPSAVEEGVVDDIIMLSDGIMVARGDLGVEMRPEDVPVIQKQIIDKCRKYGRPVVVATQMLESMIESPTPTRAEASDVATAIYDGADAIMLSAESAAGKYPVDAVMMQQRVILRVEEDKAYRKNLARSNPNRVEKSATDAITNAAREIAATIGACALVVFTARGTTVLRASMGRPGVPILAITPEIETARSLALTWGVYPAAVETRAEHETFPDVLHKICSVAKDKGLANRPDDLLVVTAGLPFGSPGVANVIRVVPASGPEDWVVGGDKNLNTI 562
The following BLAST results are available for this feature:
BLAST of NO06G01630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26183.12.600e-28491.28pyruvate kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01630NO06G01630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01630.1NO06G01630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01630.1.cds1NO06G01630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01630.1 ID=NO06G01630.1|Name=NO06G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
ATGCTGGGTCTCTTGGCCGCAACCACTGCCTTGTGTGCAAGCACCACCTC
AGCCTTCGTAATGCCCGTCCGCCCCTTGACTCTGGCTGCCCGCCCCAGCA
GCCTCACGTCGAGCAGCAGCAGCAGGAGTTGTGTTGGGATTCCTTTGCGT
ATGGTCTCACATCCGGACGTTGACAACGAATACAAGCGCAAGCTCTCGGA
GCAACGAAGATGGACGAAGAGCACAAAGCAGTTGGCAACCCTAGGGCCCG
TCTCCAACACAGAGGAGATGATAGAGAAACTGTTCCTTGCCGGCGTAGAT
GTGTTCCGTCTCAACTTTTCCCATGGCGCGCACGAAGAAAAAAAGGCGTT
GTTGGACATTATTCGAGGGCTTGAAGTGAAGTTCAATCACCCAATTGCCA
TTTTAGCGGATTTACAGGGGCCAAAGCTTCGCGTAGGGACGTTTGAGCAT
GATAAGGTGATCTTGGTGGACGGACAGTCGTTTCGATTTGACCTGAGCGA
TGAGCCAGGGGATTCGATGAGGGTCAATTTGCCCCATCCCGAGATTATTA
ATACCTTGCAAAACGGGGACACGCTTTTGTTGGATGACGGGAAGCTGCGG
ATGACTGTTACGAAAAAGGGGGAGGGTTTTGTGGACACACTGGTGAATGT
CGGAGGGGCCCTGTCGAACAGGAAGGGGGTGAACACCCCTTCGGTTGTCT
TGCCCATCTCGGCATTGACGCCCAAGGATCGGAAAGATCTGGATTTTGCG
TTGTCGATTGGCGTGGACTGGGTGGCACTTTCGTTCGTGCAGCAGCCGCA
GGACATTGCGGAGCTTCGGACGCTCGTGGGGAATAAGGCGAAGATCATGG
CGAAATTGGAGAAGCCCTCCGCCGTCCAGGAAGGAGTGGTCGACGATATA
ATTATGCTATCGGACGGAATTATGGTTGCGCGTGGAGATCTCGGGGTGGA
GATGCGACCGGAAGACGTGCCTGTCATCCAGAAGCAGATCATTGAGAAAT
GCCGAAAGTACGGCAGGCCCGTCGTGGTGGCCACTCAGATGCTCGAGAGC
ATGATTGAATCTCCCACTCCAACCCGTGCGGAAGCCTCTGACGTGGCTAC
TGCCATCTATGACGGTGCAGACGCGATCATGTTGAGCGCGGAATCGGCCG
CGGGCAAGTTCCCTGTGGAATCGGTGATGATGCAGCAGAGGGTCATTCTG
CGCGTGGAAGAAGATAAGGCTTACCGTAAGAACCTTGCGCGATCCAATCC
CCAACGTTTGGAGAAATCGGCAACCGATGCCATCACCAACGCGGCGCGGG
AAATCGCTGCCACCATTGGGGCGTGTGCTCTGGTCGTGTTCACAGCACGA
GGGACCACGGTGTTGCGTGCTTCAATGGGTCGGCCAGGCGTGCCGATCTT
GGCGATTACCCCTGAAATTGAGACGGCGCGTGCCTTGGCCTTGACTTGGG
GGGTGTATCCTGCGGCGGTTGAAACGAGGGCAGAGCACGAGACCTTTCCG
GATGTGTTGAGGAAGATTTGTAGCGTGGCGACGGACAAGGGACTGGCGAA
CCGTCCGGATGACCTTTTGGTGGTCACGGCGGGGTTGCCTTTTGGCTCTC
CTGGCGTGGCAAATGTAATTAGGGTGGTGCCTGCGTCCGGGCCGGAGGAT
TGGGTGGTGGGTGGAGATAAGAACTTGAACACGATTTAA
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protein sequence of NO06G01630.1

>NO06G01630.1-protein ID=NO06G01630.1-protein|Name=NO06G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=563bp
MLGLLAATTALCASTTSAFVMPVRPLTLAARPSSLTSSSSSRSCVGIPLR
MVSHPDVDNEYKRKLSEQRRWTKSTKQLATLGPVSNTEEMIEKLFLAGVD
VFRLNFSHGAHEEKKALLDIIRGLEVKFNHPIAILADLQGPKLRVGTFEH
DKVILVDGQSFRFDLSDEPGDSMRVNLPHPEIINTLQNGDTLLLDDGKLR
MTVTKKGEGFVDTLVNVGGALSNRKGVNTPSVVLPISALTPKDRKDLDFA
LSIGVDWVALSFVQQPQDIAELRTLVGNKAKIMAKLEKPSAVQEGVVDDI
IMLSDGIMVARGDLGVEMRPEDVPVIQKQIIEKCRKYGRPVVVATQMLES
MIESPTPTRAEASDVATAIYDGADAIMLSAESAAGKFPVESVMMQQRVIL
RVEEDKAYRKNLARSNPQRLEKSATDAITNAAREIAATIGACALVVFTAR
GTTVLRASMGRPGVPILAITPEIETARALALTWGVYPAAVETRAEHETFP
DVLRKICSVATDKGLANRPDDLLVVTAGLPFGSPGVANVIRVVPASGPED
WVVGGDKNLNTI*
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mRNA from alignment at chr6:506534..508222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01630.1 ID=NO06G01630.1|Name=NO06G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at chr6:506534..508222+ (Nannochloropsis oceanica)
ATGCTGGGTCTCTTGGCCGCAACCACTGCCTTGTGTGCAAGCACCACCTC
AGCCTTCGTAATGCCCGTCCGCCCCTTGACTCTGGCTGCCCGCCCCAGCA
GCCTCACGTCGAGCAGCAGCAGCAGGAGTTGTGTTGGGATTCCTTTGCGT
ATGGTCTCACATCCGGACGTTGACAACGAATACAAGCGCAAGCTCTCGGA
GCAACGAAGATGGACGAAGAGCACAAAGCAGTTGGCAACCCTAGGGCCCG
TCTCCAACACAGAGGAGATGATAGAGAAACTGTTCCTTGCCGGCGTAGAT
GTGTTCCGTCTCAACTTTTCCCATGGCGCGCACGAAGAAAAAAAGGCGTT
GTTGGACATTATTCGAGGGCTTGAAGTGAAGTTCAATCACCCAATTGCCA
TTTTAGCGGATTTACAGGGGCCAAAGCTTCGCGTAGGGACGTTTGAGCAT
GATAAGGTGATCTTGGTGGACGGACAGTCGTTTCGATTTGACCTGAGCGA
TGAGCCAGGGGATTCGATGAGGGTCAATTTGCCCCATCCCGAGATTATTA
ATACCTTGCAAAACGGGGACACGCTTTTGTTGGATGACGGGAAGCTGCGG
ATGACTGTTACGAAAAAGGGGGAGGGTTTTGTGGACACACTGGTGAATGT
CGGAGGGGCCCTGTCGAACAGGAAGGGGGTGAACACCCCTTCGGTTGTCT
TGCCCATCTCGGCATTGACGCCCAAGGATCGGAAAGATCTGGATTTTGCG
TTGTCGATTGGCGTGGACTGGGTGGCACTTTCGTTCGTGCAGCAGCCGCA
GGACATTGCGGAGCTTCGGACGCTCGTGGGGAATAAGGCGAAGATCATGG
CGAAATTGGAGAAGCCCTCCGCCGTCCAGGAAGGAGTGGTCGACGATATA
ATTATGCTATCGGACGGAATTATGGTTGCGCGTGGAGATCTCGGGGTGGA
GATGCGACCGGAAGACGTGCCTGTCATCCAGAAGCAGATCATTGAGAAAT
GCCGAAAGTACGGCAGGCCCGTCGTGGTGGCCACTCAGATGCTCGAGAGC
ATGATTGAATCTCCCACTCCAACCCGTGCGGAAGCCTCTGACGTGGCTAC
TGCCATCTATGACGGTGCAGACGCGATCATGTTGAGCGCGGAATCGGCCG
CGGGCAAGTTCCCTGTGGAATCGGTGATGATGCAGCAGAGGGTCATTCTG
CGCGTGGAAGAAGATAAGGCTTACCGTAAGAACCTTGCGCGATCCAATCC
CCAACGTTTGGAGAAATCGGCAACCGATGCCATCACCAACGCGGCGCGGG
AAATCGCTGCCACCATTGGGGCGTGTGCTCTGGTCGTGTTCACAGCACGA
GGGACCACGGTGTTGCGTGCTTCAATGGGTCGGCCAGGCGTGCCGATCTT
GGCGATTACCCCTGAAATTGAGACGGCGCGTGCCTTGGCCTTGACTTGGG
GGGTGTATCCTGCGGCGGTTGAAACGAGGGCAGAGCACGAGACCTTTCCG
GATGTGTTGAGGAAGATTTGTAGCGTGGCGACGGACAAGGGACTGGCGAA
CCGTCCGGATGACCTTTTGGTGGTCACGGCGGGGTTGCCTTTTGGCTCTC
CTGGCGTGGCAAATGTAATTAGGGTGGTGCCTGCGTCCGGGCCGGAGGAT
TGGGTGGTGGGTGGAGATAAGAACTTGAACACGATTTAA
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Coding sequence (CDS) from alignment at chr6:506534..508222+

>NO06G01630.1 ID=NO06G01630.1|Name=NO06G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1689bp|location=Sequence derived from alignment at chr6:506534..508222+ (Nannochloropsis oceanica)
ATGCTGGGTCTCTTGGCCGCAACCACTGCCTTGTGTGCAAGCACCACCTC
AGCCTTCGTAATGCCCGTCCGCCCCTTGACTCTGGCTGCCCGCCCCAGCA
GCCTCACGTCGAGCAGCAGCAGCAGGAGTTGTGTTGGGATTCCTTTGCGT
ATGGTCTCACATCCGGACGTTGACAACGAATACAAGCGCAAGCTCTCGGA
GCAACGAAGATGGACGAAGAGCACAAAGCAGTTGGCAACCCTAGGGCCCG
TCTCCAACACAGAGGAGATGATAGAGAAACTGTTCCTTGCCGGCGTAGAT
GTGTTCCGTCTCAACTTTTCCCATGGCGCGCACGAAGAAAAAAAGGCGTT
GTTGGACATTATTCGAGGGCTTGAAGTGAAGTTCAATCACCCAATTGCCA
TTTTAGCGGATTTACAGGGGCCAAAGCTTCGCGTAGGGACGTTTGAGCAT
GATAAGGTGATCTTGGTGGACGGACAGTCGTTTCGATTTGACCTGAGCGA
TGAGCCAGGGGATTCGATGAGGGTCAATTTGCCCCATCCCGAGATTATTA
ATACCTTGCAAAACGGGGACACGCTTTTGTTGGATGACGGGAAGCTGCGG
ATGACTGTTACGAAAAAGGGGGAGGGTTTTGTGGACACACTGGTGAATGT
CGGAGGGGCCCTGTCGAACAGGAAGGGGGTGAACACCCCTTCGGTTGTCT
TGCCCATCTCGGCATTGACGCCCAAGGATCGGAAAGATCTGGATTTTGCG
TTGTCGATTGGCGTGGACTGGGTGGCACTTTCGTTCGTGCAGCAGCCGCA
GGACATTGCGGAGCTTCGGACGCTCGTGGGGAATAAGGCGAAGATCATGG
CGAAATTGGAGAAGCCCTCCGCCGTCCAGGAAGGAGTGGTCGACGATATA
ATTATGCTATCGGACGGAATTATGGTTGCGCGTGGAGATCTCGGGGTGGA
GATGCGACCGGAAGACGTGCCTGTCATCCAGAAGCAGATCATTGAGAAAT
GCCGAAAGTACGGCAGGCCCGTCGTGGTGGCCACTCAGATGCTCGAGAGC
ATGATTGAATCTCCCACTCCAACCCGTGCGGAAGCCTCTGACGTGGCTAC
TGCCATCTATGACGGTGCAGACGCGATCATGTTGAGCGCGGAATCGGCCG
CGGGCAAGTTCCCTGTGGAATCGGTGATGATGCAGCAGAGGGTCATTCTG
CGCGTGGAAGAAGATAAGGCTTACCGTAAGAACCTTGCGCGATCCAATCC
CCAACGTTTGGAGAAATCGGCAACCGATGCCATCACCAACGCGGCGCGGG
AAATCGCTGCCACCATTGGGGCGTGTGCTCTGGTCGTGTTCACAGCACGA
GGGACCACGGTGTTGCGTGCTTCAATGGGTCGGCCAGGCGTGCCGATCTT
GGCGATTACCCCTGAAATTGAGACGGCGCGTGCCTTGGCCTTGACTTGGG
GGGTGTATCCTGCGGCGGTTGAAACGAGGGCAGAGCACGAGACCTTTCCG
GATGTGTTGAGGAAGATTTGTAGCGTGGCGACGGACAAGGGACTGGCGAA
CCGTCCGGATGACCTTTTGGTGGTCACGGCGGGGTTGCCTTTTGGCTCTC
CTGGCGTGGCAAATGTAATTAGGGTGGTGCCTGCGTCCGGGCCGGAGGAT
TGGGTGGTGGGTGGAGATAAGAACTTGAACACGATTTAA
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Synonyms
Publications