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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:497013..499917 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01580.1 vs.
Match: EWM26186.1 (alpha- -glucosyltransferase alg10-a [Nannochloropsis gaditana]) HSP 1 Score: 813.9 bits (2101), Expect = 3.100e-232 Identity = 411/567 (72.49%), Postives = 467/567 (82.36%), Query Frame = 0
Query: 1 MTASWSLSKRCWRAQAQRRQPGILHRALEDYTCKQVLCALALIHAMLLLLFQWQVPDVYMDELFHERQTRAYCQGHFDVWDPKITTPPGLYLIGAALLRAVDLLRRLLFGSSSPSLCATTATAAGSSALPYLRPISAAFNLGSFVLLHAIFYRVQRLSNGEALAQALSLSLYPVVFFFGFLYYTDAASLCSVLGMYYLARRKKHVAAAAVGGVSLMFRQTNVAWVGFVLGTSIVEDLQQAFLKKDYYYQSTPLSITGANGHPTADTASSAAYSYGTGTGTGSQFLAPSSNKKQLPDPSEPLSLSLLLRFALYLVKSLPATLQRFWPYLVPLFSFAGFLAWNGGKVVLGDVGHHTPTLHVAQLAYFILLTAHLHRPLLLLPGYREPAEGDKISALRGFGRWLQQGAGTGGGLLAGLFVLTLAGLVLHRFTLSHPFLLSDNRHYTFYVWQRVFGRYQFVNLLLTPLYAVGGWWLATRVYQGSGASSRSSSLTVLVLGLAVVLVLLPAHLLEPRYMTLPIVMTLLEAPPRSHTSLCLTGIGFVCVNFVTVYVFLYRPFTWGDGSVARFMW 568
MTASWSLSKRCWR QAQ+RQPG LH AL+ +T QVL LAL+H +LLLFQWQVPD YMDELFHERQTRAYCQG FDVWDPKITTPPGLYL+GAAL+R+++ +RRL+ G LCA G S +PYLRP+SAAFNLGSF+LL AIFYRVQ+LSNGEALAQAL+LSLYPV+FFFGFL YTDAASLC+VLGMYYLARR++HV AA VGG SL+ RQTNV WV FVLGTSIVEDLQ AFLK+DYYY +TPL+ GH S T +GTG F A + K LPDPSEPLS SLLL+F +YL++SLP+ L+RFWPY++ + FAGFLAWNGG+VVLGD GHH PT HVAQ AYF+LL A +HRPL L+PG EPAEGDK SA+ GFGRWL+ GAGTGGGLL G+FVL LAGLVLHRFTLSHPFLL+DNRHY FY+W+RVF RY F NL LTPLYA+ GWWL TRVYQGSGAS RSSSLTVLV+G+AV LVL+PAHLLEPRY TLP+VMTLLEAPPRSHTSL L+ + FV ++ +TVYVFLYRPF WGDGSVARFMW
Sbjct: 1 MTASWSLSKRCWRRQAQKRQPGFLHVALDGFTRYQVLAGLALLHVGILLLFQWQVPDAYMDELFHERQTRAYCQGRFDVWDPKITTPPGLYLLGAALVRSIESVRRLM-GVGGIPLCADD----GPSLVPYLRPLSAAFNLGSFMLLQAIFYRVQQLSNGEALAQALNLSLYPVIFFFGFLDYTDAASLCAVLGMYYLARRQRHVQAAVVGGASLLLRQTNVIWVCFVLGTSIVEDLQTAFLKRDYYYPTTPLA-----GHSAKGQLSGTG---STASGTGGLFFAAAGPKPNLPDPSEPLSFSLLLQFGVYLLRSLPSLLRRFWPYVLAILGFAGFLAWNGGRVVLGDAGHHVPTFHVAQFAYFLLLAACVHRPLFLVPGVWEPAEGDKCSAIEGFGRWLRSGAGTGGGLLPGMFVLALAGLVLHRFTLSHPFLLADNRHYVFYLWRRVFQRYPFANLFLTPLYALAGWWLTTRVYQGSGASRRSSSLTVLVVGVAVALVLVPAHLLEPRYFTLPLVMTLLEAPPRSHTSLLLSTVLFVFIDALTVYVFLYRPFLWGDGSVARFMW 554
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01580.1 ID=NO06G01580.1|Name=NO06G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp
TCTTCATATGCATGCTGCTTCTGTGATTGGATCGGCGTAAGTTTTGATGT
TAGAGCGCGATCAATGGAGGATCGATTGATGTTCGTGGGCCAGCAGGTGA
TGCCTCCGACAGGGAACATCTTTCTCTCTATAGCGGCGTCTAGGGGGGTG
GGAGGGGACGTTCAACATGACAAATATTGCCCCAACCCAAGGTCTGGCAC
CCAACATGCGTACTTCCTGATTAACTATCCTAGTACACGTGTATGCGAAA
GCGAATGAGGTGATTTGTGCCCATGAAACCAAACAGATGTAGCATATGCG
AGGCAGGGGTCTCGGCGACCTCCCGAATAATTTCGTACAGACGCGTGCTC
CGGAGTTGCAGTCTATTGTGCAGCTTTATGAGGCTAATTAGGCCTCCTCC
ATCCCTAGATTCATTTTCACCGTCTATCAACACCCACAAGCACAGGGATT
GTTTCTTCCGTCCGGGTTGCCAGACCTCGCCTCCCCATCCAGGCAGACCA
CCATCACTGCCGTTGCAACCCCGAGTTACGAGCACCGTGGCTCGTGTACC
TCCACCACAATCGCCATGACGGCCTCCTGGAGTCTCTCCAAGCGATGTTG
GCGTGCTCAAGCCCAAAGACGGCAGCCGGGCATCCTGCACCGCGCCTTGG
AAGACTACACATGCAAGCAAGTCCTATGCGCCCTAGCTTTGATCCATGCC
ATGCTTCTCCTCCTCTTTCAATGGCAGGTCCCCGACGTCTACATGGATGA
GCTTTTTCACGAAAGACAGACACGTGCCTACTGTCAAGGGCACTTTGACG
TATGGGACCCCAAGATCACCACCCCCCCCGGCCTGTATCTAATAGGCGCT
GCCCTCCTCCGCGCAGTGGACCTCCTCCGTCGCCTCCTCTTCGGGAGCTC
CTCCCCTTCCCTCTGCGCTACTACTGCCACTGCTGCAGGCAGCAGCGCCC
TCCCCTACCTCCGACCCATCAGTGCTGCGTTTAATTTGGGGAGTTTTGTG
CTGTTACATGCTATATTTTATCGTGTCCAACGGTTGAGTAATGGGGAGGC
ATTGGCGCAGGCTTTGAGCTTGTCTCTTTATCCTGTAGTTTTCTTTTTTG
GGTTTTTGTACTACACGGACGCGGCGTCCTTGTGTTCGGTGCTTGGGATG
TATTACCTGGCCCGAAGGAAAAAGCACGTGGCAGCGGCTGCGGTCGGTGG
CGTCAGCTTGATGTTTCGGCAGACGAACGTGGCATGGGTTGGTTTCGTGC
TGGGCACCAGCATCGTTGAAGACCTCCAACAAGCCTTTCTAAAGAAGGAT
TACTACTATCAATCAACGCCCCTGTCCATTACAGGAGCGAACGGCCACCC
GACCGCAGACACTGCAAGTTCTGCAGCCTACTCCTACGGCACCGGCACTG
GAACTGGTTCCCAATTCCTCGCCCCTAGCAGCAATAAAAAGCAACTCCCC
GACCCGTCCGAGCCGCTTTCCCTCTCCCTCCTCCTCCGCTTTGCGTTATA
CCTGGTCAAGTCACTCCCTGCCACCCTTCAGCGGTTCTGGCCCTACCTCG
TCCCCCTCTTCTCCTTCGCCGGCTTCCTGGCTTGGAATGGGGGAAAGGTT
GTGCTGGGCGACGTGGGGCACCACACCCCTACACTGCACGTGGCGCAGCT
GGCGTACTTCATCCTTTTGACCGCCCACCTCCACCGGCCCTTGCTTCTCC
TTCCTGGCTACAGGGAGCCAGCTGAAGGGGATAAGATAAGTGCCTTGCGG
GGATTCGGGAGGTGGCTGCAGCAGGGGGCAGGGACGGGAGGAGGGTTGTT
GGCAGGGCTCTTTGTCCTTACGCTGGCCGGATTGGTGTTGCATCGATTTA
CCTTGTCGCACCCGTTTCTGTTGAGCGACAACAGGCATTACACATTCTAT
GTGTGGCAGCGGGTGTTTGGTCGGTATCAGTTCGTGAATCTGTTGCTGAC
GCCGCTATATGCTGTGGGTGGCTGGTGGCTGGCGACGAGAGTGTACCAGG
GCAGTGGTGCGAGTAGTAGGAGCAGTAGTCTGACTGTGTTGGTCCTCGGT
TTAGCCGTTGTGCTTGTTTTGCTACCGGCCCATTTGCTGGAGCCAAGGTA
TATGACCTTGCCTATCGTGATGACGTTGTTGGAAGCCCCGCCACGGAGTC
ACACGTCTCTGTGTTTGACGGGCATAGGTTTTGTGTGCGTAAATTTTGTG
ACAGTCTATGTCTTTTTGTACCGGCCTTTTACTTGGGGGGATGGGAGCGT
GGCGCGGTTTATGTGGTAGGGAAAAGGGGGGCTCAGGGAAGGAGAAAGGG
AGGAAGAGAGAGTGTAAAAAAAGTGGGTGAGGTATTTGAATAAAAGCAGA
TAGCAAATATTGATACGTGCTTTGCGCGTGCATAACATCGACGACAGACA
CAAAACAAACGAATTTCACGGTAAGGCGATGATGAATGAAACCAGAAGAA
GATTAAAGGAAAAGGAATAGCAGTTGCAGCAGAGGGACACAGCCACAGCA
TGAGGAAAAATAACTCCATTACCGAATGAATTAAATGCCAATACACATGC
ATATCCTAACCAAAAGAAATGACCGCGAGAGGAAAGAGACA back to topprotein sequence of NO06G01580.1 >NO06G01580.1-protein ID=NO06G01580.1-protein|Name=NO06G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MTASWSLSKRCWRAQAQRRQPGILHRALEDYTCKQVLCALALIHAMLLLL
FQWQVPDVYMDELFHERQTRAYCQGHFDVWDPKITTPPGLYLIGAALLRA
VDLLRRLLFGSSSPSLCATTATAAGSSALPYLRPISAAFNLGSFVLLHAI
FYRVQRLSNGEALAQALSLSLYPVVFFFGFLYYTDAASLCSVLGMYYLAR
RKKHVAAAAVGGVSLMFRQTNVAWVGFVLGTSIVEDLQQAFLKKDYYYQS
TPLSITGANGHPTADTASSAAYSYGTGTGTGSQFLAPSSNKKQLPDPSEP
LSLSLLLRFALYLVKSLPATLQRFWPYLVPLFSFAGFLAWNGGKVVLGDV
GHHTPTLHVAQLAYFILLTAHLHRPLLLLPGYREPAEGDKISALRGFGRW
LQQGAGTGGGLLAGLFVLTLAGLVLHRFTLSHPFLLSDNRHYTFYVWQRV
FGRYQFVNLLLTPLYAVGGWWLATRVYQGSGASSRSSSLTVLVLGLAVVL
VLLPAHLLEPRYMTLPIVMTLLEAPPRSHTSLCLTGIGFVCVNFVTVYVF
LYRPFTWGDGSVARFMW* back to topmRNA from alignment at chr6:497013..499917- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01580.1 ID=NO06G01580.1|Name=NO06G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2905bp|location=Sequence derived from alignment at chr6:497013..499917- (Nannochloropsis oceanica)
TCTTCATATGCATGCTGCTTCTGTGATTGGATCGGCGTAAGTTTTGATGT
TAGAGCGCGATCAATGGAGGATCGATTGATGTTCGTGGGCCAGCAGGTGA
TGCCTCCGACAGGGAACATCTTTCTCTCTATAGCGGCGTCTAGGGGGGTG
GGAGGGGACGTTCAACATGACAAATATTGCCCCAACCCAAGGTCTGGCAC
CCAACATGCGTACTTCCTGATTAACTATCCTAGTACACGTGTATGCGAAA
GCGAATGAGGTGATTTGTGCCCATGAAACCAAACAGATGTAGCATATGCG
AGGCAGGGGTCTCGGCGACCTCCCGAATAATTTCGTACAGACGCGTGCTC
CGGAGTTGCAGTCTATTGTGCAGCTTTATGAGGCTAATTAGGCCTCCTCC
ATCCCTAGATTCATTTTCACCGTCTATCAACACCCACAAGCACAGGGATT
GTTTCTTCCGTCCGGGTTGCCAGACCTCGCCTCCCCATCCAGGCAGACCA
CCATCACTGCCGTTGCAACCCCGAGTTACGAGCACCGTGGCTCGTGTACC
TCCACCACAATCGCCATGACGGCCTCCTGGAGTCTCTCCAAGCGATGTTG
GCGTGCTCAAGCCCAAAGACGGCAGCCGGGCATCCTGCACCGCGCCTTGG
AAGACTACACATGCAAGCAAGTCCTATGCGCCCTAGCTTTGATCCATGCC
ATGCTTCTCCTCCTCTTTCAATGGCAGGTCCCCGACGTCTACATGGTGAG
AGAAAACTAGAAGATGCTTGTGGTTGGGGAGCGGTGGGATAAGAAAAGGT
GAATGAGCATCAGATCAGAACAGCATGGGCACAGACCTTGACAGGCACCA
GCTTCCCCCGTCTCATGTAGCACAACCCCTGCCAACCTTGTCCTTTTCTC
TATTTTTACAAACATTAGGATGAGCTTTTTCACGAAAGACAGACACGTGC
CTACTGTCAAGGGCACTTTGGTACGTAATTTCACTCATTGTCCTTGTTTG
CCTTTTGACATCCCCCATTGCTCTCCCCCCTCCCCTTCCCGTCAATTTCC
ACTCTTTTCACCATCTTTTCTTTTCCTCTCCCTCCCTTCCTCCTCCCCTC
TCCCTCTCCAGACGTATGGGACCCCAAGATCACCACCCCCCCCGGCCTGT
ATCTAATAGGCGCTGCCCTCCTCCGCGCAGTGGACCTCCTCCGTCGCCTC
CTCTTCGGGAGCTCCTCCCCTTCCCTCTGCGCTACTACTGCCACTGCTGC
AGGCAGCAGCGCCCTCCCCTACCTCCGACCCATCAGTGCTGCGTTTAATT
TGGGGAGTTTTGTGCTGTTACATGCTATATTTTATCGTGTCCAACGGTTG
AGTAATGGGGAGGCATTGGCGCAGGCTTTGAGCTTGTCTCTTTATCCTGT
AGTTTTCTTTTTTGGGTTTTTGTACTACACGGACGCGGCGTCCTTGTGTT
CGGTGCTTGGGATGTATTACCTGGCCCGAAGGAAAAAGCACGTGGCAGCG
GCTGCGGTCGGTGGCGTCAGCTTGATGTTTCGGCAGACGAACGTGGCATG
GGTTGGTTTCGTGCTGGGCACCAGCATCGTTGAAGACCTCCAACAAGCCT
TTCTAAAGAAGGATTACTACTATCAATCAACGCCCCTGTCCATTACAGGA
GCGAACGGCCACCCGACCGCAGACACTGCAAGTTCTGCAGCCTACTCCTA
CGGCACCGGCACTGGAACTGGTTCCCAATTCCTCGCCCCTAGCAGCAATA
AAAAGCAACTCCCCGACCCGTCCGAGCCGCTTTCCCTCTCCCTCCTCCTC
CGCTTTGCGTTATACCTGGTCAAGTCACTCCCTGCCACCCTTCAGCGGTT
CTGGCCCTACCTCGTCCCCCTCTTCTCCTTCGCCGGCTTCCTGGCTTGGA
ATGGGGGAAAGGTTGTGCTGGGCGACGTGGGGCACCACACCCCTACACTG
CACGTGGCGCAGCTGGCGTACTTCATCCTTTTGACCGCCCACCTCCACCG
GCCCTTGCTTCTCCTTCCTGGCTACAGGGAGCCAGCTGAAGGGGATAAGA
TAAGTGCCTTGCGGGGATTCGGGAGGTGGCTGCAGCAGGGGGCAGGGACG
GGAGGAGGGTTGTTGGCAGGGCTCTTTGTCCTTACGCTGGCCGGATTGGT
GTTGCATCGATTTACCTTGTCGCACCCGTTTCTGTTGAGCGACAACAGGC
ATTACACATTCTATGTGTGGCAGCGGGTGTTTGGTCGGTATCAGTTCGTG
AATCTGTTGCTGACGCCGCTATATGCTGTGGGTGGCTGGTGGCTGGCGAC
GAGAGTGTACCAGGGCAGTGGTGCGAGTAGTAGGAGCAGTAGTCTGACTG
TGTTGGTCCTCGGTTTAGCCGTTGTGCTTGTTTTGCTACCGGCCCATTTG
CTGGAGCCAAGGTATATGACCTTGCCTATCGTGATGACGTTGTTGGAAGC
CCCGCCACGGAGTCACACGTCTCTGTGTTTGACGGGCATAGGTTTTGTGT
GCGTAAATTTTGTGACAGTCTATGTCTTTTTGTACCGGCCTTTTACTTGG
GGGGATGGGAGCGTGGCGCGGTTTATGTGGTAGGGAAAAGGGGGGCTCAG
GGAAGGAGAAAGGGAGGAAGAGAGAGTGTAAAAAAAGTGGGTGAGGTATT
TGAATAAAAGCAGATAGCAAATATTGATACGTGCTTTGCGCGTGCATAAC
ATCGACGACAGACACAAAACAAACGAATTTCACGGTAAGGCGATGATGAA
TGAAACCAGAAGAAGATTAAAGGAAAAGGAATAGCAGTTGCAGCAGAGGG
ACACAGCCACAGCATGAGGAAAAATAACTCCATTACCGAATGAATTAAAT
GCCAATACACATGCATATCCTAACCAAAAGAAATGACCGCGAGAGGAAAG
AGACA back to topCoding sequence (CDS) from alignment at chr6:497013..499917- >NO06G01580.1 ID=NO06G01580.1|Name=NO06G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr6:497013..499917- (Nannochloropsis oceanica)
ATGACGGCCTCCTGGAGTCTCTCCAAGCGATGTTGGCGTGCTCAAGCCCA
AAGACGGCAGCCGGGCATCCTGCACCGCGCCTTGGAAGACTACACATGCA
AGCAAGTCCTATGCGCCCTAGCTTTGATCCATGCCATGCTTCTCCTCCTC
TTTCAATGGCAGGTCCCCGACGTCTACATGGATGAGCTTTTTCACGAAAG
ACAGACACGTGCCTACTGTCAAGGGCACTTTGACGTATGGGACCCCAAGA
TCACCACCCCCCCCGGCCTGTATCTAATAGGCGCTGCCCTCCTCCGCGCA
GTGGACCTCCTCCGTCGCCTCCTCTTCGGGAGCTCCTCCCCTTCCCTCTG
CGCTACTACTGCCACTGCTGCAGGCAGCAGCGCCCTCCCCTACCTCCGAC
CCATCAGTGCTGCGTTTAATTTGGGGAGTTTTGTGCTGTTACATGCTATA
TTTTATCGTGTCCAACGGTTGAGTAATGGGGAGGCATTGGCGCAGGCTTT
GAGCTTGTCTCTTTATCCTGTAGTTTTCTTTTTTGGGTTTTTGTACTACA
CGGACGCGGCGTCCTTGTGTTCGGTGCTTGGGATGTATTACCTGGCCCGA
AGGAAAAAGCACGTGGCAGCGGCTGCGGTCGGTGGCGTCAGCTTGATGTT
TCGGCAGACGAACGTGGCATGGGTTGGTTTCGTGCTGGGCACCAGCATCG
TTGAAGACCTCCAACAAGCCTTTCTAAAGAAGGATTACTACTATCAATCA
ACGCCCCTGTCCATTACAGGAGCGAACGGCCACCCGACCGCAGACACTGC
AAGTTCTGCAGCCTACTCCTACGGCACCGGCACTGGAACTGGTTCCCAAT
TCCTCGCCCCTAGCAGCAATAAAAAGCAACTCCCCGACCCGTCCGAGCCG
CTTTCCCTCTCCCTCCTCCTCCGCTTTGCGTTATACCTGGTCAAGTCACT
CCCTGCCACCCTTCAGCGGTTCTGGCCCTACCTCGTCCCCCTCTTCTCCT
TCGCCGGCTTCCTGGCTTGGAATGGGGGAAAGGTTGTGCTGGGCGACGTG
GGGCACCACACCCCTACACTGCACGTGGCGCAGCTGGCGTACTTCATCCT
TTTGACCGCCCACCTCCACCGGCCCTTGCTTCTCCTTCCTGGCTACAGGG
AGCCAGCTGAAGGGGATAAGATAAGTGCCTTGCGGGGATTCGGGAGGTGG
CTGCAGCAGGGGGCAGGGACGGGAGGAGGGTTGTTGGCAGGGCTCTTTGT
CCTTACGCTGGCCGGATTGGTGTTGCATCGATTTACCTTGTCGCACCCGT
TTCTGTTGAGCGACAACAGGCATTACACATTCTATGTGTGGCAGCGGGTG
TTTGGTCGGTATCAGTTCGTGAATCTGTTGCTGACGCCGCTATATGCTGT
GGGTGGCTGGTGGCTGGCGACGAGAGTGTACCAGGGCAGTGGTGCGAGTA
GTAGGAGCAGTAGTCTGACTGTGTTGGTCCTCGGTTTAGCCGTTGTGCTT
GTTTTGCTACCGGCCCATTTGCTGGAGCCAAGGTATATGACCTTGCCTAT
CGTGATGACGTTGTTGGAAGCCCCGCCACGGAGTCACACGTCTCTGTGTT
TGACGGGCATAGGTTTTGTGTGCGTAAATTTTGTGACAGTCTATGTCTTT
TTGTACCGGCCTTTTACTTGGGGGGATGGGAGCGTGGCGCGGTTTATGTG
GTAG back to top
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