NO06G01550.1, NO06G01550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01550.1
Unique NameNO06G01550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1383
Alignment locationchr6:487374..488873 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:487374..488873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01550.1 vs.
Match: EWM26191.1 (u2 small nuclear ribonucleoprotein a [Nannochloropsis gaditana])

HSP 1 Score: 389.4 bits (999), Expect = 1.500e-104
Identity = 273/489 (55.83%), Postives = 321/489 (65.64%), Query Frame = 0 
Query:    1 MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCDNEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLASLSEIDHLSSLQNLQHLSLVDNPVARTSHYRPYILHKLPNLKILDFKKIKLDERKAANKLFKSDAGKQQLADIADEGKAIASEAASKAPEKRAMTDEERRLARAMIDSATTPEELELVQRQLRAGIFKAP-EPAVKQQEGAPAAATPAATSGECPTAPPSTAAFAPPMPPAAGTAPPTVQKPPPPPAPTSAALPTAPLQIPTPTPPPP----PPTPVVVPAPTAAVAPLFPPPP-------------PPSPPRPATTAAATPASVSPSKRKRTPSRRAVEEEEQE---EEKQPAEQENNEEAEMTTASLTAAAAVAEAAAAAAAADAMDVDENERGEDG--------LTMKMVDGMKVAELKVALKERGLAITGLKAELHDRLKAHVLG 461
            MRITADVV+HARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDT+DL DNEI+RLDNFPRMRR+KTLLLCNN+IAR G+ALGEQI ELEALVLTNNK+ASLSEIDHL+SL  L+HLSLVDNPV R+ HYR YILHKLP+L +LDF+K+K DER+AA KLF+S AG+Q L+ IADEGK +A+E+A K  EKR MT+EE+RLA+AMID ATTPEELE V+RQLRAGIFKAP  P   QQ   P    P                  PP  P       + +K     + +  ALP+ P  +P P  P      PP+P V  AP A V+ L PPPP             PP PP P  +A     +   +KRKR  S  A  E+ Q+    EK+   QE     E   A+ + A A A AA  A      +    E+ EDG        LT+  V+ MKVAELK ALKERGLA  GLKAEL DRL++HV+G
Sbjct:    1 MRITADVVVHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTVDLSDNEIRRLDNFPRMRRLKTLLLCNNSIARFGSALGEQISELEALVLTNNKVASLSEIDHLASLTKLRHLSLVDNPVVRSLHYRLYILHKLPHLTVLDFQKVKADERRAAKKLFQSQAGQQHLSAIADEGKLLAAESAGKVREKRVMTEEEKRLAQAMIDKATTPEELERVERQLRAGIFKAPGPPPPGQQHAQPQEQEP------------------PPQMPLVAENGASTEK-----SGSEQALPSVPASVPAPPAPAVAPILPPSPPVTSAP-APVSSLPPPPPAPIADATSSVLQAPPIPPPPTVSAPPVDPTTVSAKRKREASSGAAGEDGQQPGKREKESRTQEAASAGEAVPATQSKAHAEAGAANEAPPPPVPEPATEEKTEDGGEGDREEVLTVAGVEAMKVAELKAALKERGLATNGLKAELMDRLRSHVVG 465
The following BLAST results are available for this feature:
BLAST of NO06G01550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26191.11.500e-10455.83u2 small nuclear ribonucleoprotein a [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01550NO06G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01550.1NO06G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01550.1.cds1NO06G01550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01550.1.cds2NO06G01550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01550.1 ID=NO06G01550.1|Name=NO06G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
ATGCGGATCACTGCCGATGTCGTTCTGCACGCCCGCGCATTTGTCAACCC
TGTCAAAGAGCGCGAGCTAGACCTGCGTGGCCTTAAGATCCCCCTCATTG
AAAACCTGGGTGTGACCCAAGACCAATTCGACACCATCGACCTCTGCGAC
AACGAAATTAAGCGCCTGGACAACTTCCCCCGGATGCGCCGGATCAAGAC
CCTCCTCCTCTGCAACAACAATATCGCTCGGATCGGCACTGCCTTAGGGG
AGCAAATCCCCGAACTGGAAGCGTTGGTTCTGACAAACAACAAGCTTGCC
AGCCTCAGTGAGATCGATCATTTGTCCTCTCTCCAAAACCTGCAGCATCT
TTCCCTCGTCGACAACCCCGTGGCCCGCACCTCTCACTATCGGCCCTACA
TCCTTCACAAACTCCCCAATCTCAAGATCCTCGACTTCAAAAAAATCAAG
CTCGACGAGAGAAAAGCGGCCAATAAATTGTTCAAGTCTGATGCAGGCAA
ACAACAACTCGCAGACATAGCAGATGAAGGTAAAGCCATTGCCTCCGAGG
CCGCCTCAAAGGCCCCGGAAAAACGAGCAATGACTGACGAAGAAAGACGC
CTGGCCAGAGCTATGATTGACAGTGCCACGACGCCCGAGGAACTAGAATT
GGTACAACGGCAACTCCGTGCCGGGATCTTCAAAGCACCAGAACCCGCGG
TCAAGCAGCAGGAGGGTGCTCCAGCAGCAGCAACACCAGCTGCCACATCA
GGAGAATGTCCTACTGCTCCTCCTTCTACGGCTGCGTTTGCCCCCCCTAT
GCCTCCTGCAGCTGGAACTGCCCCACCTACCGTTCAGAAGCCGCCTCCTC
CTCCCGCACCAACATCAGCGGCGCTCCCAACAGCGCCACTGCAGATTCCC
ACTCCCACCCCTCCACCCCCTCCTCCTACTCCAGTTGTAGTGCCGGCGCC
GACCGCGGCTGTTGCCCCTCTCTTCCCTCCTCCTCCTCCTCCTTCTCCTC
CTCGCCCTGCTACTACTGCTGCTGCTACTCCCGCCTCTGTTTCCCCCTCC
AAACGAAAGCGCACACCGAGTCGCAGGGCGGTTGAGGAAGAAGAGCAGGA
GGAGGAAAAGCAACCGGCAGAGCAAGAGAACAATGAGGAAGCTGAGATGA
CCACAGCATCGTTAACAGCAGCAGCGGCAGTGGCAGAAGCAGCAGCGGCA
GCAGCAGCAGCAGATGCCATGGATGTGGACGAGAACGAAAGAGGGGAGGA
TGGATTGACGATGAAGATGGTGGATGGGATGAAGGTTGCTGAGTTGAAGG
TAGCTTTGAAGGAAAGGGGGTTGGCTATCACGGGCCTGAAAGCGGAATTA
CATGACAGGCTGAAAGCACATGTGTTGGGGTAG
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protein sequence of NO06G01550.1

>NO06G01550.1-protein ID=NO06G01550.1-protein|Name=NO06G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MRITADVVLHARAFVNPVKERELDLRGLKIPLIENLGVTQDQFDTIDLCD
NEIKRLDNFPRMRRIKTLLLCNNNIARIGTALGEQIPELEALVLTNNKLA
SLSEIDHLSSLQNLQHLSLVDNPVARTSHYRPYILHKLPNLKILDFKKIK
LDERKAANKLFKSDAGKQQLADIADEGKAIASEAASKAPEKRAMTDEERR
LARAMIDSATTPEELELVQRQLRAGIFKAPEPAVKQQEGAPAAATPAATS
GECPTAPPSTAAFAPPMPPAAGTAPPTVQKPPPPPAPTSAALPTAPLQIP
TPTPPPPPPTPVVVPAPTAAVAPLFPPPPPPSPPRPATTAAATPASVSPS
KRKRTPSRRAVEEEEQEEEKQPAEQENNEEAEMTTASLTAAAAVAEAAAA
AAAADAMDVDENERGEDGLTMKMVDGMKVAELKVALKERGLAITGLKAEL
HDRLKAHVLG*
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mRNA from alignment at chr6:487374..488873+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01550.1 ID=NO06G01550.1|Name=NO06G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at chr6:487374..488873+ (Nannochloropsis oceanica)
ATGCGGATCACTGCCGATGTCGTTCTGGTACGTAATAGGTCCTCGCATTC
CACCTCCCCCATGTCCTTCATTCAACTCCGCCTCTTTCCTCCTTCTCCTC
CTCCCTCTGAATCTCACTCACATCCGCCTATCCCACTTCTTCAGCACGCC
CGCGCATTTGTCAACCCTGTCAAAGAGCGCGAGCTAGACCTGCGTGGCCT
TAAGATCCCCCTCATTGAAAACCTGGGTGTGACCCAAGACCAATTCGACA
CCATCGACCTCTGCGACAACGAAATTAAGCGCCTGGACAACTTCCCCCGG
ATGCGCCGGATCAAGACCCTCCTCCTCTGCAACAACAATATCGCTCGGAT
CGGCACTGCCTTAGGGGAGCAAATCCCCGAACTGGAAGCGTTGGTTCTGA
CAAACAACAAGCTTGCCAGCCTCAGTGAGATCGATCATTTGTCCTCTCTC
CAAAACCTGCAGCATCTTTCCCTCGTCGACAACCCCGTGGCCCGCACCTC
TCACTATCGGCCCTACATCCTTCACAAACTCCCCAATCTCAAGATCCTCG
ACTTCAAAAAAATCAAGCTCGACGAGAGAAAAGCGGCCAATAAATTGTTC
AAGTCTGATGCAGGCAAACAACAACTCGCAGACATAGCAGATGAAGGTAA
AGCCATTGCCTCCGAGGCCGCCTCAAAGGCCCCGGAAAAACGAGCAATGA
CTGACGAAGAAAGACGCCTGGCCAGAGCTATGATTGACAGTGCCACGACG
CCCGAGGAACTAGAATTGGTACAACGGCAACTCCGTGCCGGGATCTTCAA
AGCACCAGAACCCGCGGTCAAGCAGCAGGAGGGTGCTCCAGCAGCAGCAA
CACCAGCTGCCACATCAGGAGAATGTCCTACTGCTCCTCCTTCTACGGCT
GCGTTTGCCCCCCCTATGCCTCCTGCAGCTGGAACTGCCCCACCTACCGT
TCAGAAGCCGCCTCCTCCTCCCGCACCAACATCAGCGGCGCTCCCAACAG
CGCCACTGCAGATTCCCACTCCCACCCCTCCACCCCCTCCTCCTACTCCA
GTTGTAGTGCCGGCGCCGACCGCGGCTGTTGCCCCTCTCTTCCCTCCTCC
TCCTCCTCCTTCTCCTCCTCGCCCTGCTACTACTGCTGCTGCTACTCCCG
CCTCTGTTTCCCCCTCCAAACGAAAGCGCACACCGAGTCGCAGGGCGGTT
GAGGAAGAAGAGCAGGAGGAGGAAAAGCAACCGGCAGAGCAAGAGAACAA
TGAGGAAGCTGAGATGACCACAGCATCGTTAACAGCAGCAGCGGCAGTGG
CAGAAGCAGCAGCGGCAGCAGCAGCAGCAGATGCCATGGATGTGGACGAG
AACGAAAGAGGGGAGGATGGATTGACGATGAAGATGGTGGATGGGATGAA
GGTTGCTGAGTTGAAGGTAGCTTTGAAGGAAAGGGGGTTGGCTATCACGG
GCCTGAAAGCGGAATTACATGACAGGCTGAAAGCACATGTGTTGGGGTAG
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Coding sequence (CDS) from alignment at chr6:487374..488873+

>NO06G01550.1 ID=NO06G01550.1|Name=NO06G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr6:487374..488873+ (Nannochloropsis oceanica)
ATGCGGATCACTGCCGATGTCGTTCTGCACGCCCGCGCATTTGTCAACCC
TGTCAAAGAGCGCGAGCTAGACCTGCGTGGCCTTAAGATCCCCCTCATTG
AAAACCTGGGTGTGACCCAAGACCAATTCGACACCATCGACCTCTGCGAC
AACGAAATTAAGCGCCTGGACAACTTCCCCCGGATGCGCCGGATCAAGAC
CCTCCTCCTCTGCAACAACAATATCGCTCGGATCGGCACTGCCTTAGGGG
AGCAAATCCCCGAACTGGAAGCGTTGGTTCTGACAAACAACAAGCTTGCC
AGCCTCAGTGAGATCGATCATTTGTCCTCTCTCCAAAACCTGCAGCATCT
TTCCCTCGTCGACAACCCCGTGGCCCGCACCTCTCACTATCGGCCCTACA
TCCTTCACAAACTCCCCAATCTCAAGATCCTCGACTTCAAAAAAATCAAG
CTCGACGAGAGAAAAGCGGCCAATAAATTGTTCAAGTCTGATGCAGGCAA
ACAACAACTCGCAGACATAGCAGATGAAGGTAAAGCCATTGCCTCCGAGG
CCGCCTCAAAGGCCCCGGAAAAACGAGCAATGACTGACGAAGAAAGACGC
CTGGCCAGAGCTATGATTGACAGTGCCACGACGCCCGAGGAACTAGAATT
GGTACAACGGCAACTCCGTGCCGGGATCTTCAAAGCACCAGAACCCGCGG
TCAAGCAGCAGGAGGGTGCTCCAGCAGCAGCAACACCAGCTGCCACATCA
GGAGAATGTCCTACTGCTCCTCCTTCTACGGCTGCGTTTGCCCCCCCTAT
GCCTCCTGCAGCTGGAACTGCCCCACCTACCGTTCAGAAGCCGCCTCCTC
CTCCCGCACCAACATCAGCGGCGCTCCCAACAGCGCCACTGCAGATTCCC
ACTCCCACCCCTCCACCCCCTCCTCCTACTCCAGTTGTAGTGCCGGCGCC
GACCGCGGCTGTTGCCCCTCTCTTCCCTCCTCCTCCTCCTCCTTCTCCTC
CTCGCCCTGCTACTACTGCTGCTGCTACTCCCGCCTCTGTTTCCCCCTCC
AAACGAAAGCGCACACCGAGTCGCAGGGCGGTTGAGGAAGAAGAGCAGGA
GGAGGAAAAGCAACCGGCAGAGCAAGAGAACAATGAGGAAGCTGAGATGA
CCACAGCATCGTTAACAGCAGCAGCGGCAGTGGCAGAAGCAGCAGCGGCA
GCAGCAGCAGCAGATGCCATGGATGTGGACGAGAACGAAAGAGGGGAGGA
TGGATTGACGATGAAGATGGTGGATGGGATGAAGGTTGCTGAGTTGAAGG
TAGCTTTGAAGGAAAGGGGGTTGGCTATCACGGGCCTGAAAGCGGAATTA
CATGACAGGCTGAAAGCACATGTGTTGGGGTAG
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Synonyms
Publications