NO06G01540.1, NO06G01540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01540.1
Unique NameNO06G01540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr6:485580..486797 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:485580..486797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01540.1 vs.
Match: EWM26195.1 (XAP5 protein [Nannochloropsis gaditana])

HSP 1 Score: 509.6 bits (1311), Expect = 8.000e-141
Identity = 271/382 (70.94%), Postives = 315/382 (82.46%), Query Frame = 0 
Query:    1 MSHSDFGRGGTGIHTVEGNQAGARAAKLTQKREQDQREFEAKKRKIQDDSQRAMDGIDQKFSSIQQTAFNLDFVGLKTKEELLNLKGAAEEEAARQKMVEEEEARRREKEEKKKRKQKQTKVARLSFAMGGDDEAEDDD------DEERSSRPTEDVDAVN------------SSSSSRSSSTF-FKKRKTLKNPEAETSFLRDPMAEKEQALLRENLKLEWLAEQERVKEEMLEVTYSYWDGSGHRRVLKCKKGTTIAKFVEMVKSQVAAEFTDLRGVTSDELMYIKEDLIIPHNYSFYDLILTKARGKSGPLFHFDVHDDVRLTMDARVEKDESHPGKVVERRWYERNKHIFPASRWEIYDPKVQRGGYTVHGGEVQEKK 364
            MSH+ F RG TGIHTVEGN AG RAAKLTQKRE+DQ+E+EAKKRKIQDDSQRA+ GIDQKF SIQQ AF LDFVGLKTKEELLNLKGAAE+EAARQ+ +E EEA R+E+EE+K+RK+KQ K ARLSFAMGG++E E+++      D   S++  +  +A N             S+  R   T   KKRK L NP AETS+LRDP AEKE+A+LRE LK EWL EQ+R+KEE+LEVTYSYWDGSGHRRVL+CKKG +I  F++ VK+QVA EF DLRG++ D++MYIKEDLIIPHN SFYDLI+TKARGKSGPLFHFDVHDDVRLTMDARVEKDESHPGKVV+R+WYERNKHIFPASRWE+YDPKV RGGY++HGGEVQ KK
Sbjct:   11 MSHAGFARGDTGIHTVEGNLAGGRAAKLTQKREKDQKEYEAKKRKIQDDSQRAVGGIDQKFKSIQQNAFTLDFVGLKTKEELLNLKGAAEQEAARQEKLEAEEALRKEREERKRRKEKQKKTARLSFAMGGEEEEEEEEEGGSGGDRPTSAKGNKAANASNDKEMSIPGTSAGESALGRGEETLTVKKRKKLVNPGAETSYLRDPEAEKEEAILRERLKQEWLEEQDRIKEEVLEVTYSYWDGSGHRRVLRCKKGVSIGAFLQQVKAQVAVEFPDLRGISPDDMMYIKEDLIIPHNVSFYDLIVTKARGKSGPLFHFDVHDDVRLTMDARVEKDESHPGKVVDRKWYERNKHIFPASRWEVYDPKVVRGGYSIHGGEVQAKK 392
The following BLAST results are available for this feature:
BLAST of NO06G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26195.18.000e-14170.94XAP5 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01540NO06G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01540.1NO06G01540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01540.1.cds1NO06G01540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01540.1.cds2NO06G01540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01540.1 ID=NO06G01540.1|Name=NO06G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ATGTCGCATTCCGACTTCGGCCGGGGGGGCACCGGCATCCACACCGTTGA
GGGCAATCAAGCTGGGGCCCGCGCAGCCAAGTTGACGCAGAAGCGCGAGC
AGGATCAGCGGGAGTTTGAAGCCAAGAAGCGCAAAATCCAAGACGACTCT
CAACGGGCCATGGATGGAATCGACCAGAAATTCAGCAGCATCCAACAGAC
CGCATTCAATTTGGATTTTGTGGGGTTGAAAACAAAGGAGGAATTGCTCA
ATTTGAAGGGAGCCGCAGAAGAGGAGGCAGCAAGGCAAAAGATGGTGGAG
GAGGAGGAGGCCCGACGTCGAGAGAAGGAGGAGAAGAAGAAGAGAAAGCA
GAAACAGACAAAGGTAGCTCGACTGAGTTTCGCCATGGGCGGGGATGACG
AGGCGGAGGACGACGACGACGAAGAGAGGAGCAGCCGACCTACCGAGGAC
GTGGACGCCGTCAATTCCTCGTCCTCTTCCAGGAGCAGCTCTACTTTCTT
TAAGAAGAGGAAAACTCTCAAAAATCCTGAGGCAGAAACCAGCTTCTTAC
GCGACCCGATGGCGGAAAAAGAGCAGGCCTTGCTCCGCGAGAACCTCAAG
CTCGAATGGCTGGCGGAGCAAGAGCGGGTCAAGGAAGAGATGTTGGAAGT
TACATATTCTTACTGGGATGGCTCAGGACATCGACGGGTGTTAAAGTGTA
AGAAGGGTACCACTATTGCCAAGTTTGTCGAGATGGTCAAGAGTCAGGTG
GCGGCGGAATTTACTGATTTGCGAGGCGTTACATCAGATGAGTTAATGTA
TATCAAGGAAGACCTCATTATCCCGCACAACTACTCTTTTTATGATTTGA
TTTTGACGAAGGCACGGGGGAAGTCTGGGCCATTGTTTCATTTTGATGTC
CACGACGATGTGAGGCTGACAATGGATGCGAGGGTGGAGAAGGATGAGAG
TCATCCAGGCAAAGTAGTGGAAAGGAGGTGGTATGAGAGGAATAAACACA
TTTTCCCCGCAAGTCGTTGGGAGATTTATGACCCGAAAGTGCAAAGGGGG
GGTTATACTGTGCATGGGGGGGAGGTGCAGGAGAAGAAGAAGAGGTGA
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protein sequence of NO06G01540.1

>NO06G01540.1-protein ID=NO06G01540.1-protein|Name=NO06G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MSHSDFGRGGTGIHTVEGNQAGARAAKLTQKREQDQREFEAKKRKIQDDS
QRAMDGIDQKFSSIQQTAFNLDFVGLKTKEELLNLKGAAEEEAARQKMVE
EEEARRREKEEKKKRKQKQTKVARLSFAMGGDDEAEDDDDEERSSRPTED
VDAVNSSSSSRSSSTFFKKRKTLKNPEAETSFLRDPMAEKEQALLRENLK
LEWLAEQERVKEEMLEVTYSYWDGSGHRRVLKCKKGTTIAKFVEMVKSQV
AAEFTDLRGVTSDELMYIKEDLIIPHNYSFYDLILTKARGKSGPLFHFDV
HDDVRLTMDARVEKDESHPGKVVERRWYERNKHIFPASRWEIYDPKVQRG
GYTVHGGEVQEKKKR*
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mRNA from alignment at chr6:485580..486797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01540.1 ID=NO06G01540.1|Name=NO06G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp|location=Sequence derived from alignment at chr6:485580..486797+ (Nannochloropsis oceanica)
ATGTCGCATTCCGACTTCGGCCGGGGGGGCACCGGCATCCACACCGTTGA
GGGCAATCAAGCTGGGGCCCGCGCAGCCAAGTTGACGCAGAAGCGCGAGC
AGGATCAGCGGGAGTTTGAAGCCAAGAAGGTTAGTTCATTGCCACTCAGG
ATAATATATATGTGATTAGGTTGCCCCCCTCAAGGCTTGCCCTTCCCTCT
CCCTCCGTCGCGCTTACCCTCCTCTACCCCTCCCTCCTATTTCGAACAGC
GCAAAATCCAAGACGACTCTCAACGGGCCATGGATGGAATCGACCAGAAA
TTCAGCAGCATCCAACAGACCGCATTCAATTTGGATTTTGTGGGGTTGAA
AACAAAGGAGGAATTGCTCAATTTGAAGGGAGCCGCAGAAGAGGAGGCAG
CAAGGCAAAAGATGGTGGAGGAGGAGGAGGCCCGACGTCGAGAGAAGGAG
GAGAAGAAGAAGAGAAAGCAGAAACAGACAAAGGTAGCTCGACTGAGTTT
CGCCATGGGCGGGGATGACGAGGCGGAGGACGACGACGACGAAGAGAGGA
GCAGCCGACCTACCGAGGACGTGGACGCCGTCAATTCCTCGTCCTCTTCC
AGGAGCAGCTCTACTTTCTTTAAGAAGAGGAAAACTCTCAAAAATCCTGA
GGCAGAAACCAGCTTCTTACGCGACCCGATGGCGGAAAAAGAGCAGGCCT
TGCTCCGCGAGAACCTCAAGCTCGAATGGCTGGCGGAGCAAGAGCGGGTC
AAGGAAGAGATGTTGGAAGTTACATATTCTTACTGGGATGGCTCAGGACA
TCGACGGGTGTTAAAGTGTAAGAAGGGTACCACTATTGCCAAGTTTGTCG
AGATGGTCAAGAGTCAGGTGGCGGCGGAATTTACTGATTTGCGAGGCGTT
ACATCAGATGAGTTAATGTATATCAAGGAAGACCTCATTATCCCGCACAA
CTACTCTTTTTATGATTTGATTTTGACGAAGGCACGGGGGAAGTCTGGGC
CATTGTTTCATTTTGATGTCCACGACGATGTGAGGCTGACAATGGATGCG
AGGGTGGAGAAGGATGAGAGTCATCCAGGCAAAGTAGTGGAAAGGAGGTG
GTATGAGAGGAATAAACACATTTTCCCCGCAAGTCGTTGGGAGATTTATG
ACCCGAAAGTGCAAAGGGGGGGTTATACTGTGCATGGGGGGGAGGTGCAG
GAGAAGAAGAAGAGGTGA
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Coding sequence (CDS) from alignment at chr6:485580..486797+

>NO06G01540.1 ID=NO06G01540.1|Name=NO06G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr6:485580..486797+ (Nannochloropsis oceanica)
ATGTCGCATTCCGACTTCGGCCGGGGGGGCACCGGCATCCACACCGTTGA
GGGCAATCAAGCTGGGGCCCGCGCAGCCAAGTTGACGCAGAAGCGCGAGC
AGGATCAGCGGGAGTTTGAAGCCAAGAAGCGCAAAATCCAAGACGACTCT
CAACGGGCCATGGATGGAATCGACCAGAAATTCAGCAGCATCCAACAGAC
CGCATTCAATTTGGATTTTGTGGGGTTGAAAACAAAGGAGGAATTGCTCA
ATTTGAAGGGAGCCGCAGAAGAGGAGGCAGCAAGGCAAAAGATGGTGGAG
GAGGAGGAGGCCCGACGTCGAGAGAAGGAGGAGAAGAAGAAGAGAAAGCA
GAAACAGACAAAGGTAGCTCGACTGAGTTTCGCCATGGGCGGGGATGACG
AGGCGGAGGACGACGACGACGAAGAGAGGAGCAGCCGACCTACCGAGGAC
GTGGACGCCGTCAATTCCTCGTCCTCTTCCAGGAGCAGCTCTACTTTCTT
TAAGAAGAGGAAAACTCTCAAAAATCCTGAGGCAGAAACCAGCTTCTTAC
GCGACCCGATGGCGGAAAAAGAGCAGGCCTTGCTCCGCGAGAACCTCAAG
CTCGAATGGCTGGCGGAGCAAGAGCGGGTCAAGGAAGAGATGTTGGAAGT
TACATATTCTTACTGGGATGGCTCAGGACATCGACGGGTGTTAAAGTGTA
AGAAGGGTACCACTATTGCCAAGTTTGTCGAGATGGTCAAGAGTCAGGTG
GCGGCGGAATTTACTGATTTGCGAGGCGTTACATCAGATGAGTTAATGTA
TATCAAGGAAGACCTCATTATCCCGCACAACTACTCTTTTTATGATTTGA
TTTTGACGAAGGCACGGGGGAAGTCTGGGCCATTGTTTCATTTTGATGTC
CACGACGATGTGAGGCTGACAATGGATGCGAGGGTGGAGAAGGATGAGAG
TCATCCAGGCAAAGTAGTGGAAAGGAGGTGGTATGAGAGGAATAAACACA
TTTTCCCCGCAAGTCGTTGGGAGATTTATGACCCGAAAGTGCAAAGGGGG
GGTTATACTGTGCATGGGGGGGAGGTGCAGGAGAAGAAGAAGAGGTGA
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Synonyms
Publications