NO06G01430.1, NO06G01430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01430.1
Unique NameNO06G01430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length354
Alignment locationchr6:455292..455645 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:455292..455645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G01430.1 vs.
Match: EWM26189.1 (hypothetical protein Naga_100072g5 [Nannochloropsis gaditana])

HSP 1 Score: 131.7 bits (330), Expect = 1.500e-27
Identity = 70/115 (60.87%), Postives = 88/115 (76.52%), Query Frame = 0
Query:    1 MPLEATFLLKRPTESELQACGLLENTNRLAPALQCNARALRQAMTKDMLSFELAARPEAQSLQSKGVHSPNSKLSPSLYCAAHNLEYSLKKDAVAKFLRDRPAKEDLEAEGILSP 116
            M LE TFL  RPTE+++Q  GLL + N +APALQ  AR L++AM KD ++ +LA+RP+A+SL  KGVHSP S +SPSL  AAHNLE  LKKDAVAK LR+RP K++L  +GILSP
Sbjct:   38 MSLEPTFLTNRPTEADMQERGLL-SPNSIAPALQGKARTLQKAMVKDAIALQLASRPDAESLHDKGVHSPGSNISPSLLPAAHNLEKCLKKDAVAKSLRERPTKDELITDGILSP 151          
The following BLAST results are available for this feature:
BLAST of NO06G01430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26189.11.500e-2760.87hypothetical protein Naga_100072g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01430NO06G01430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01430.1NO06G01430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01430.1.cds1NO06G01430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01430.1 ID=NO06G01430.1|Name=NO06G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=354bp
ATGCCCCTCGAAGCTACTTTCCTCTTAAAGCGCCCTACTGAGTCCGAGCT
CCAAGCCTGCGGCCTTTTAGAAAACACGAACCGCCTCGCTCCTGCTTTGC
AATGCAATGCTCGCGCTCTACGTCAGGCCATGACCAAGGACATGCTTTCC
TTTGAGCTTGCCGCGCGGCCCGAAGCCCAGTCCCTCCAGAGCAAGGGCGT
GCATTCTCCCAACAGTAAGCTTTCACCGTCCTTGTACTGTGCGGCTCACA
ATCTGGAGTACTCCCTTAAAAAGGACGCTGTGGCCAAGTTCCTGCGCGAT
CGTCCCGCCAAGGAGGATCTGGAGGCGGAGGGCATCCTGTCGCCGTGCAA
GTAG
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protein sequence of NO06G01430.1

>NO06G01430.1-protein ID=NO06G01430.1-protein|Name=NO06G01430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MPLEATFLLKRPTESELQACGLLENTNRLAPALQCNARALRQAMTKDMLS
FELAARPEAQSLQSKGVHSPNSKLSPSLYCAAHNLEYSLKKDAVAKFLRD
RPAKEDLEAEGILSPCK*
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mRNA from alignment at chr6:455292..455645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01430.1 ID=NO06G01430.1|Name=NO06G01430.1|organism=Nannochloropsis oceanica|type=mRNA|length=354bp|location=Sequence derived from alignment at chr6:455292..455645- (Nannochloropsis oceanica)
ATGCCCCTCGAAGCTACTTTCCTCTTAAAGCGCCCTACTGAGTCCGAGCT CCAAGCCTGCGGCCTTTTAGAAAACACGAACCGCCTCGCTCCTGCTTTGC AATGCAATGCTCGCGCTCTACGTCAGGCCATGACCAAGGACATGCTTTCC TTTGAGCTTGCCGCGCGGCCCGAAGCCCAGTCCCTCCAGAGCAAGGGCGT GCATTCTCCCAACAGTAAGCTTTCACCGTCCTTGTACTGTGCGGCTCACA ATCTGGAGTACTCCCTTAAAAAGGACGCTGTGGCCAAGTTCCTGCGCGAT CGTCCCGCCAAGGAGGATCTGGAGGCGGAGGGCATCCTGTCGCCGTGCAA GTAG
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Coding sequence (CDS) from alignment at chr6:455292..455645-

>NO06G01430.1 ID=NO06G01430.1|Name=NO06G01430.1|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at chr6:455292..455645- (Nannochloropsis oceanica)
ATGCCCCTCGAAGCTACTTTCCTCTTAAAGCGCCCTACTGAGTCCGAGCT
CCAAGCCTGCGGCCTTTTAGAAAACACGAACCGCCTCGCTCCTGCTTTGC
AATGCAATGCTCGCGCTCTACGTCAGGCCATGACCAAGGACATGCTTTCC
TTTGAGCTTGCCGCGCGGCCCGAAGCCCAGTCCCTCCAGAGCAAGGGCGT
GCATTCTCCCAACAGTAAGCTTTCACCGTCCTTGTACTGTGCGGCTCACA
ATCTGGAGTACTCCCTTAAAAAGGACGCTGTGGCCAAGTTCCTGCGCGAT
CGTCCCGCCAAGGAGGATCTGGAGGCGGAGGGCATCCTGTCGCCGTGCAA
GTAG
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Synonyms
Publications