NO06G01190.1, NO06G01190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G01190.1
Unique Name	NO06G01190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2123
Alignment location	chr6:378887..381477 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:378887..381477 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G01190.1 vs.
Match: EWM26157.1 (beta- -endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 835.9 bits (2158), Expect = 6.400e-239
Identity = 390/476 (81.93%), Postives = 426/476 (89.50%), Query Frame = 0

Query:    1 MLYQRTRQILATLLLFTATPQGPFAEGKPKDSSGKTDTTHLDYPKAMKLATLFYDAQRSGRLPANNRIPWRGDSALGDGQDHGLDLTGGWYDAGDHVKFNFPMAWSATTLIWGVLEFGDAWSKSGEMANIIDTVKWPLDYLLKCHPDENTYYVQVGDGGADHQFWGAAESMNMNRPSFAVTPQNPGTEFAAEGAAALAAGSILFKGDKEYSDLLKAKAKSLFEFANKYRGSSDISAPYYKSYSGYWDELGWASTWLYKATKEQKYLNMVENDFYDACCAVTNKTEFSWDKKSSAVQLLLFELTKKEKYSEGFAGFMDSFMYHTPRTPKGLVYFDKWAPNRYSANTAFLALVAAKHGLETKTYIEFAQSQIDYILKAGGDVNPETNQPFYSYQIGFGDKYPRAPHHRGASCGNGWCGCSSSPQPNILYGAMVGGPGQNDDYSDDCGNYVTNEVATDYNAGFTSACAGLAQLVLKLNK 477
            ML   TRQ L  LLLF  +      E K   SS K +   LDYPKAMKL TLFY+AQRSG+LP++NRIPWRGDSAL DGQDHGLDLTGGWYDAGDHVKFNFPMAWSATTLIWGVLEFGDAW K+GEM NI+DTVKWPLDYLLKCHP+E+TYYVQVGDG ADH +WGAAES+NMNRPSFA+TP NPGTEFAAEGAAALAAGSILF+ D  YS LLKAKA+SLFE A+K RGSSDIS+P+YKSYSGYWDELGWA+ WLYKATK+ KYL M END+YD CCAVTNKTEFSWD+KSSAVQL+L++LTKKEKY++GFAGFMDS+MY TPRTPKGLV+FDKWAPNRYSANTAFLALVAAKHGL   TYI FA+SQIDYILKAGGD+NPET QP+YSYQIGFGD +PRAPHHRGASCGNGWCGCS SPQPNILYGA+VGGPG+NDDYSDDCGNYVTNEVATDYNAGFTSACAGLAQLVLKL +
Sbjct:    1 MLCVHTRQSLVALLLFAVSYGTRSIEAKSLRSSAKENGIELDYPKAMKLTTLFYEAQRSGKLPSDNRIPWRGDSALSDGQDHGLDLTGGWYDAGDHVKFNFPMAWSATTLIWGVLEFGDAWKKTGEMKNILDTVKWPLDYLLKCHPNEDTYYVQVGDGNADHSYWGAAESLNMNRPSFAITPNNPGTEFAAEGAAALAAGSILFEDDTAYSALLKAKARSLFELADKNRGSSDISSPFYKSYSGYWDELGWAAVWLYKATKDAKYLEMAENDYYDNCCAVTNKTEFSWDRKSSAVQLILYDLTKKEKYADGFAGFMDSWMYETPRTPKGLVFFDKWAPNRYSANTAFLALVAAKHGLVPTTYIAFAKSQIDYILKAGGDINPETKQPYYSYQIGFGDNFPRAPHHRGASCGNGWCGCSGSPQPNILYGAIVGGPGKNDDYSDDCGNYVTNEVATDYNAGFTSACAGLAQLVLKLKR 476

The following BLAST results are available for this feature:

BLAST of NO06G01190.1 vs.

BLAST of NO06G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26157.1	6.400e-239	81.93	beta- -endoglucanase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G01190	NO06G01190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G01190.1	NO06G01190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G01190.1.cds1	NO06G01190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G01190.1.cds2	NO06G01190.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G01190.1.cds3	NO06G01190.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO06G01190.1.cds4	NO06G01190.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:378887..381477+
coding sequence from alignment at chr6:378887..381477+

mRNA sequence

>NO06G01190.1 ID=NO06G01190.1|Name=NO06G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2123bp
TGGCTCCCCAAACGACGCTTTCTGGTGCGATTCAAATCGCGAGGACAAGA
TCGGGGCTTTCCTGGCCATAAGCCTACATTCCTTCGCACTGGTTACTTGC
ACAGAAGAGTAGAATTGTCTTCGCTTATTGCTTTTTTGCGCATACCTCTT
TCTTTGCCTGCGCACATCCTGCACATCATCACTCCAATTTACCACACGGC
AACTGCAGCTTTACCTTCAGACAGACTCGTACATCAGCCTCGCTATATCC
GTTTTCCCTTCGTGATCTCCCTATCGTCAAGCGACATACGCATCCCGTCC
CACACAACTTGTCTTTTCTATCCAATATCTGCACAACCTTAGTCAAAAGA
GCAGTCTCTCCACACCACTCGGACACCATGCTTTACCAACGCACCCGACA
AATCTTGGCGACCCTTCTTCTTTTCACCGCGACACCTCAAGGTCCCTTTG
CAGAGGGAAAACCCAAGGACAGCAGTGGCAAGACCGACACCACCCACCTT
GACTATCCCAAGGCCATGAAGCTGGCCACCCTCTTTTACGACGCGCAACG
AAGCGGTCGACTTCCTGCCAACAACCGCATCCCCTGGCGCGGAGACAGTG
CTCTGGGGGACGGACAAGACCACGGGCTAGATCTGACGGGGGGCTGGTAC
GATGCAGGCGACCATGTGAAATTTAATTTTCCGATGGCCTGGAGTGCGAC
AACATTGATTTGGGGGGTTTTGGAATTTGGGGATGCTTGGTCCAAGTCTG
GCGAGATGGCAAACATCATTGACACCGTCAAGTGGCCATTGGATTACTTG
CTCAAGTGCCATCCGGACGAAAATACGTACTACGTCCAAGTGGGCGATGG
AGGAGCAGATCATCAGTTTTGGGGGGCGGCTGAGTCGATGAACATGAACC
GTCCTTCCTTCGCTGTGACTCCTCAGAACCCGGGGACGGAATTTGCGGCT
GAAGGCGCTGCAGCTTTGGCTGCGGGTTCGATCTTGTTTAAGGGTGATAA
GGAATATTCGGATTTGTTGAAGGCGAAAGCGAAGTCTCTGTTTGAGTTTG
CAAATAAGTATCGCGGATCGAGCGACATCTCTGCGCCGTATTATAAGAGT
TATAGCGGCTACTGGGACGAGCTGGGATGGGCCTCCACCTGGCTCTACAA
GGCAACCAAAGAGCAAAAATACCTCAACATGGTCGAGAATGACTTTTATG
ATGCCTGCTGCGCCGTGACCAACAAGACTGAGTTTTCGTGGGACAAGAAA
TCGTCTGCCGTCCAGTTGCTGCTGTTCGAGCTGACAAAGAAGGAGAAGTA
CTCGGAAGGCTTCGCGGGCTTCATGGACAGCTTTATGTATCACACACCCC
GCACGCCCAAGGGTCTTGTGTATTTTGATAAATGGGCCCCAAACCGTTAT
AGCGCCAATACGGCCTTCTTGGCTCTGGTGGCAGCGAAGCATGGTTTGGA
AACTAAGACTTACATTGAGTTCGCCCAGTCTCAAATCGACTATATCTTGA
AGGCGGGTGGCGATGTGAATCCCGAAACGAACCAGCCGTTTTATTCGTAC
CAGATTGGATTCGGTGATAAGTACCCACGCGCACCTCACCATCGGGGGGC
GTCCTGTGGGAATGGATGGTGCGGGTGCTCGAGTTCTCCTCAGCCTAACA
TTCTGTACGGAGCAATGGTGGGTGGTCCGGGGCAAAATGATGATTATTCG
GATGATTGCGGGAACTACGTGACGAACGAAGTGGCGACTGATTACAATGC
TGGTTTCACGTCTGCTTGCGCCGGCCTTGCTCAGCTGGTCTTGAAGCTCA
ACAAGTAAATACATCGCATGCCAGACATGGGAGGTGTGATCAGTGGAGAA
AGCGAAAGGAGGAGACAAAAACAGACCAGAGACAAACGGGAAAATAAAGT
AAATGTCTAGATGTACTCAAAGAAGGAATAAGAAAGGGATTGACATTCGC
AATGTGCCATGGAATGGCACAAAGTGAGGGTGATAGAATAAAACAGGAAG
GGGTAAGCGATAAGTCGGCATGTGTGTGCATGTGAAGAGACGAGAAATAT
GGGGAGAATTCAAATTCTAGCAGAAAGGAGAAATATAAAAGGACCATATA
GATATTGTAAGCATAGCGTTATT

protein sequence of NO06G01190.1

>NO06G01190.1-protein ID=NO06G01190.1-protein|Name=NO06G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MLYQRTRQILATLLLFTATPQGPFAEGKPKDSSGKTDTTHLDYPKAMKLA
TLFYDAQRSGRLPANNRIPWRGDSALGDGQDHGLDLTGGWYDAGDHVKFN
FPMAWSATTLIWGVLEFGDAWSKSGEMANIIDTVKWPLDYLLKCHPDENT
YYVQVGDGGADHQFWGAAESMNMNRPSFAVTPQNPGTEFAAEGAAALAAG
SILFKGDKEYSDLLKAKAKSLFEFANKYRGSSDISAPYYKSYSGYWDELG
WASTWLYKATKEQKYLNMVENDFYDACCAVTNKTEFSWDKKSSAVQLLLF
ELTKKEKYSEGFAGFMDSFMYHTPRTPKGLVYFDKWAPNRYSANTAFLAL
VAAKHGLETKTYIEFAQSQIDYILKAGGDVNPETNQPFYSYQIGFGDKYP
RAPHHRGASCGNGWCGCSSSPQPNILYGAMVGGPGQNDDYSDDCGNYVTN
EVATDYNAGFTSACAGLAQLVLKLNK*

mRNA from alignment at chr6:378887..381477+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G01190.1 ID=NO06G01190.1|Name=NO06G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at chr6:378887..381477+ (Nannochloropsis oceanica)
TGGCTCCCCAAACGACGCTTTCTGGTGCGATTCAAATCGCGAGGACAAGA
TCGGGGCTTTCCTGGCCATAAGCCTACATTCCTTCGCACTGGTTACTTGC
ACAGAAGAGTAGAATTGTCTTCGCTTATTGCTTTTTTGCGCATACCTCTT
TCTTTGCCTGCGCACATCCTGCACATCATCACTCCAATTTACCACACGGC
AACTGCAGCTTTACCTTCAGACAGACTCGTACATCAGCCTCGCTATATCC
GTTTTCCCTTCGTGATCTCCCTATCGTCAAGCGACATACGCATCCCGTCC
CACACAACTTGTCTTTTCTATCCAATATCTGCACAACCTTAGTCAAAAGA
GCAGTCTCTCCACACCACTCGGACACCATGCTTTACCAACGCACCCGACA
AATCTTGGCGACCCTTCTTCTTTTCACCGCGACACCTCAAGGTCCCTTTG
CAGAGGGAAAACCCAAGGACAGCAGTGGCAAGACCGACACCACCCACCTT
GACTATCCCAAGGCCATGAAGCTGGCCACCCTCTTTTACGACGCGCAACG
AAGGTCAGCCATGAAATGGAATCAACATAAGCAGCATATATGACATTTGA
CAAACATAACAGTATACGCACATCTTTCCCCCCTCCCTCTCTCTCCTCCC
ATGCAGCGGTCGACTTCCTGCCAACAACCGCATCCCCTGGCGCGGAGACA
GTGCTCTGGGGGACGGACAAGACCACGGGCTAGATCTGACGGGGGGCTGG
TACGATGCAGGCGACCATGTGAAATTTAATTTTCCGATGGCCTGGAGTGC
GACAACATTGATTTGGGGGGTTTTGGAATTTGGGGATGCTTGGTCCAAGT
CTGGCGAGATGGCAAACATCATTGACACCGTCAAGTGGCCATTGGATTAC
TTGCTCAAGTGCCATCCGGACGAAAATACGTACTACGTCCAAGTGGGCGA
TGGAGGAGCAGATCATCAGTTTTGGGGGGCGGCTGAGTCGATGAACATGA
ACCGTCCTTCCTTCGCTGTGACTCCTCAGAACCCGGGGACGGAATTTGCG
GCTGAAGGCGCTGCAGCTTTGGCTGCGGGTTCGATCTTGTTTAAGGGTGA
TAAGGAATATTCGGATTTGTTGAAGGCGAAAGCGAAGTCTCTGTTTGAGT
TTGCAAATAAGTATCGCGGATCGAGCGACATCTCTGCGCCGTATTATAAG
AGTTATAGGTGGGTAGGGAAGGAGGGAAGGAGGGGAGGGAGACGGGGAAA
AGATCTTGGAGGGGGGGGGGGGGGAATCGGTGAGGATATGCTGCTTCCTA
GTTTGGAATGAGAGGGGGGAGGATGAAAAATTGCACCTGTCTGTATATGA
GCTTGTGGCTTTGTCAGCAGCAGATGTATTCCCTCCCATGCTTGTGTCTC
ATAACCACCGCCAAATAAGGCCCCCCCTCCATCGCTCACACCGACACTCT
CCCTAAAACGAACAGCGGCTACTGGGACGAGCTGGGATGGGCCTCCACCT
GGCTCTACAAGGCAACCAAAGAGCAAAAATACCTCAACATGGTCGAGAAT
GACTTTTATGATGCCTGCTGCGCCGTGACCAACAAGACTGAGTTTTCGTG
GGACAAGAAATCGTCTGCCGTCCAGTTGCTGCTGTTCGAGCTGACAAAGA
AGGAGAAGTACTCGGAAGGCTTCGCGGGCTTCATGGACAGCTTTATGTAT
CACACACCCCGCACGCCCAAGGGTCTTGTGTATTTTGATAAATGGGCCCC
AAACCGTTATAGCGCCAATACGGCCTTCTTGGCTCTGGTGGCAGCGAAGC
ATGGTTTGGAAACTAAGACTTACATTGAGTTCGCCCAGTCTCAAATCGAC
TATATCTTGAAGGCGGGTGGCGATGTGAATCCCGAAACGAACCAGCCGTT
TTATTCGTACCAGATTGGATTCGGTGATAAGTACCCACGCGCACCTCACC
ATCGGGGGGCGTCCTGTGGGAATGGATGGTGCGGGTGCTCGAGTTCTCCT
CAGCCTAACATTCTGTACGGAGCAATGGTGGGTGGTCCGGGGCAAAATGA
TGATTATTCGGATGATTGCGGGAACTACGTGACGAACGAAGTGGCGACTG
GTGAGAAAGGAGGGTGGGGAAGGCGGGGGATTTATATGTTTTCCTTATTT
TTCTTTGGTTTGTGATCTCATACTTATTGTAAAACCCACTATACCACACC
AAACATAGATTACAATGCTGGTTTCACGTCTGCTTGCGCCGGCCTTGCTC
AGCTGGTCTTGAAGCTCAACAAGTAAATACATCGCATGCCAGACATGGGA
GGTGTGATCAGTGGAGAAAGCGAAAGGAGGAGACAAAAACAGACCAGAGA
CAAACGGGAAAATAAAGTAAATGTCTAGATGTACTCAAAGAAGGAATAAG
AAAGGGATTGACATTCGCAATGTGCCATGGAATGGCACAAAGTGAGGGTG
ATAGAATAAAACAGGAAGGGGTAAGCGATAAGTCGGCATGTGTGTGCATG
TGAAGAGACGAGAAATATGGGGAGAATTCAAATTCTAGCAGAAAGGAGAA
ATATAAAAGGACCATATAGATATTGTAAGCATAGCGTTATT

Coding sequence (CDS) from alignment at chr6:378887..381477+

>NO06G01190.1 ID=NO06G01190.1|Name=NO06G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr6:378887..381477+ (Nannochloropsis oceanica)
ATGCTTTACCAACGCACCCGACAAATCTTGGCGACCCTTCTTCTTTTCAC
CGCGACACCTCAAGGTCCCTTTGCAGAGGGAAAACCCAAGGACAGCAGTG
GCAAGACCGACACCACCCACCTTGACTATCCCAAGGCCATGAAGCTGGCC
ACCCTCTTTTACGACGCGCAACGAAGCGGTCGACTTCCTGCCAACAACCG
CATCCCCTGGCGCGGAGACAGTGCTCTGGGGGACGGACAAGACCACGGGC
TAGATCTGACGGGGGGCTGGTACGATGCAGGCGACCATGTGAAATTTAAT
TTTCCGATGGCCTGGAGTGCGACAACATTGATTTGGGGGGTTTTGGAATT
TGGGGATGCTTGGTCCAAGTCTGGCGAGATGGCAAACATCATTGACACCG
TCAAGTGGCCATTGGATTACTTGCTCAAGTGCCATCCGGACGAAAATACG
TACTACGTCCAAGTGGGCGATGGAGGAGCAGATCATCAGTTTTGGGGGGC
GGCTGAGTCGATGAACATGAACCGTCCTTCCTTCGCTGTGACTCCTCAGA
ACCCGGGGACGGAATTTGCGGCTGAAGGCGCTGCAGCTTTGGCTGCGGGT
TCGATCTTGTTTAAGGGTGATAAGGAATATTCGGATTTGTTGAAGGCGAA
AGCGAAGTCTCTGTTTGAGTTTGCAAATAAGTATCGCGGATCGAGCGACA
TCTCTGCGCCGTATTATAAGAGTTATAGCGGCTACTGGGACGAGCTGGGA
TGGGCCTCCACCTGGCTCTACAAGGCAACCAAAGAGCAAAAATACCTCAA
CATGGTCGAGAATGACTTTTATGATGCCTGCTGCGCCGTGACCAACAAGA
CTGAGTTTTCGTGGGACAAGAAATCGTCTGCCGTCCAGTTGCTGCTGTTC
GAGCTGACAAAGAAGGAGAAGTACTCGGAAGGCTTCGCGGGCTTCATGGA
CAGCTTTATGTATCACACACCCCGCACGCCCAAGGGTCTTGTGTATTTTG
ATAAATGGGCCCCAAACCGTTATAGCGCCAATACGGCCTTCTTGGCTCTG
GTGGCAGCGAAGCATGGTTTGGAAACTAAGACTTACATTGAGTTCGCCCA
GTCTCAAATCGACTATATCTTGAAGGCGGGTGGCGATGTGAATCCCGAAA
CGAACCAGCCGTTTTATTCGTACCAGATTGGATTCGGTGATAAGTACCCA
CGCGCACCTCACCATCGGGGGGCGTCCTGTGGGAATGGATGGTGCGGGTG
CTCGAGTTCTCCTCAGCCTAACATTCTGTACGGAGCAATGGTGGGTGGTC
CGGGGCAAAATGATGATTATTCGGATGATTGCGGGAACTACGTGACGAAC
GAAGTGGCGACTGATTACAATGCTGGTTTCACGTCTGCTTGCGCCGGCCT
TGCTCAGCTGGTCTTGAAGCTCAACAAGTAA

Synonyms

Publications