NO06G01170.1, NO06G01170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01170.1
Unique NameNO06G01170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1821
Alignment locationchr6:368891..370863 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:368891..370863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01170.1 vs.
Match: EWM26085.1 (cupin 4 family protein [Nannochloropsis gaditana])

HSP 1 Score: 444.5 bits (1142), Expect = 3.600e-121
Identity = 240/413 (58.11%), Postives = 292/413 (70.70%), Query Frame = 0 
Query:    4 SRLIEHRPHSGRDKQAGQEED---EKDSEWSVRQGPFDEEDFEDDPEGGE-RTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHVDNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSWVLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAITAAAAA-AAAASGQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYVLARWMGKHLTRPRQTRRQRVREEEEEGNGEDGEEGGGGYLVEIDREEAETIVQELMERGKGEGEKKEQWGV--------VYRAEGLKFAHALENSLLFVDGHVWELKDEDGERRWRVCACLTGGPSPLPADELKELLNSSPECSEIVREWLERGFLYVLGE 404
            SRLIEH   + R+K   +EE    ++ + WSVRQGPFDEEDF+ + + GE RTWTVLVQEVDRHVPEV DLLQSFRFLPNWR+DDIMISYAPQAGGIGPHVDNYDVFLLQ  GTR+WSIQN+L+    E  SL+P++P+RVL ++ E H+W L PGD+LYLPPRVPH+GVSLD+DCMTYSIGFRAPTQ ELL AA  AA +      +G  FY D  L   +D GEITP AL Q++ +V+  +A+VLDD+ +LARW G+ LT P+   R    EE        GEE G    V ++REEA  +VQEL+  G     + E+ G         +YRAEGLKFAHA    LLFVDGHVW+L+DED ERR R+C CLTGG SP P  ++  +L  S EC ++V EWL RGFLYV+ E
Sbjct:  412 SRLIEH--WALRNKVEAEEEGCHGDEGATWSVRQGPFDEEDFQGEGDEGEGRTWTVLVQEVDRHVPEVGDLLQSFRFLPNWRVDDIMISYAPQAGGIGPHVDNYDVFLLQGRGTRKWSIQNALMDRETEARSLIPHNPLRVLASFRETHAWTLEPGDLLYLPPRVPHDGVSLDQDCMTYSIGFRAPTQEELLEAATAAAVSTLREREAGPRFYVDPHLPYAQDVGEITPVALKQVRGLVQDALAAVLDDDALLARWAGRSLTGPKHRSRAVAAEE--------GEEFG----VWMEREEARAVVQELL--GWESSREIEEKGATQASMPRKLYRAEGLKFAHADGGRLLFVDGHVWDLRDEDEERRRRICNCLTGGASPFPLQDISSVLRESLECVDVVTEWLMRGFLYVVEE 808
The following BLAST results are available for this feature:
BLAST of NO06G01170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26085.13.600e-12158.11cupin 4 family protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01170NO06G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01170.1NO06G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01170.1.cds1NO06G01170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01170.1.cds2NO06G01170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01170.1 ID=NO06G01170.1|Name=NO06G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp
CAGGCGTACTCTTGGGGATCGCTCTTCTCCACCCTAGCATCTTCTCCAAC
GTTACACCCAGCTACCACCATCATGCCACCGGGCCACATACCCCTCCTTT
GCGTGGCCTCGACAGTCGCAATGATGCTGCTACTACAAACCTCGCATGCC
TTCCTGGCCCTCCCAGTATTGTCACACGTCTCCAGTACAAGAAATATGCC
CAACCACAAACGCCAGCATTGCGCATCCTCCTCGTCCTTTTCTCATGACG
CCAAAACTATTCACTTGCCCGCCCCCCTGCGGAGTGGACAGGGGGGCTGC
CACAAAACAAGCACGTCTTATTCTTGCGTGAATTTTGGCAACAAAAGCCG
CTATTGATTCGACAGGCTTTTGATCCAGCTGTGGCGGTGGTGGGACCGAA
TGAGCTGCTATCGTTGGCATGCGATGACATGGTGACGTCGCGCTTGATCG
AGCACCGGCCACACAGCGGAAGAGACAAACAGGCTGGACAGGAGGAAGAT
GAAAAAGACAGTGAATGGAGTGTGCGGCAAGGACCTTTTGACGAGGAGGA
TTTTGAAGACGACCCGGAGGGGGGGGAGAGGACGTGGACGGTGTTGGTAC
AGGAGGTGGATAGGCATGTGCCTGAAGTGGCGGACTTGCTGCAATCCTTC
AGGTTTCTCCCAAACTGGCGGTTGGATGACATCATGATAAGTTATGCACC
CCAGGCAGGCGGGATCGGCCCACATGTCGACAATTACGATGTTTTCCTCC
TCCAAAGCCATGGCACCCGTCGCTGGTCCATCCAAAACTCCCTTCTGTCC
GCCGCGGACGAACTCTCCTCCCTCCTTCCTAACAGCCCTGTCCGGGTTCT
GGGCACCTGGGAGGAGGACCACTCATGGGTGTTACGACCTGGGGACATGC
TGTACCTTCCCCCCCGGGTTCCTCACAATGGCGTTAGTCTCGACAAAGAC
TGCATGACCTACTCGATTGGTTTTCGGGCGCCCACCCAGGCGGAGCTACT
ACATGCAGCGATCACTGCTGCTGCTGCTGCTGCTGCTGCGGCATCCGGGC
AAACTTTTTACAGCGATCAGTCTCTTGCCTTGCCGAGAGATGCGGGTGAG
ATCACTCCCAACGCATTGAGTCAGTTAAAAGAGATGGTAAAAAAAGGTAT
GGCCTCTGTACTGGATGATGAGTATGTTTTAGCAAGATGGATGGGGAAAC
ACCTGACGAGACCCAGGCAAACAAGGAGACAAAGAGTAAGGGAGGAGGAG
GAAGAAGGAAACGGGGAAGACGGGGAGGAGGGGGGAGGGGGATATCTAGT
AGAGATAGACAGGGAAGAAGCGGAGACGATTGTGCAGGAGTTGATGGAAA
GAGGGAAGGGGGAAGGAGAGAAGAAGGAGCAGTGGGGGGTCGTCTATCGC
GCGGAGGGTTTAAAATTTGCCCATGCATTGGAGAATAGTCTCTTGTTTGT
GGACGGACATGTGTGGGAGTTGAAGGACGAAGACGGGGAACGACGGTGGA
GGGTGTGTGCGTGCTTGACTGGAGGGCCGTCACCTTTGCCAGCGGATGAA
TTGAAGGAGCTCCTTAATTCGAGCCCTGAGTGTTCTGAGATCGTGAGGGA
GTGGTTGGAACGAGGGTTCTTGTATGTTCTGGGTGAAGAAACAGTGGTGG
TGGAGGAGGAATGAATTTATTGAAAAAATTGAAAAAGTATACAAATGAAT
GAGAGCCCAAAAAATCGAGTTTTGATCATCCGAAATCATTTTACGTACTG
TCATTGTTAAAAGTAGAATTAAACGGGGGGAAAAAAAAGAAGCAAATGTT
TGATGACGTCCGCTGAAGAGA
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protein sequence of NO06G01170.1

>NO06G01170.1-protein ID=NO06G01170.1-protein|Name=NO06G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=412bp
MVTSRLIEHRPHSGRDKQAGQEEDEKDSEWSVRQGPFDEEDFEDDPEGGE
RTWTVLVQEVDRHVPEVADLLQSFRFLPNWRLDDIMISYAPQAGGIGPHV
DNYDVFLLQSHGTRRWSIQNSLLSAADELSSLLPNSPVRVLGTWEEDHSW
VLRPGDMLYLPPRVPHNGVSLDKDCMTYSIGFRAPTQAELLHAAITAAAA
AAAAASGQTFYSDQSLALPRDAGEITPNALSQLKEMVKKGMASVLDDEYV
LARWMGKHLTRPRQTRRQRVREEEEEGNGEDGEEGGGGYLVEIDREEAET
IVQELMERGKGEGEKKEQWGVVYRAEGLKFAHALENSLLFVDGHVWELKD
EDGERRWRVCACLTGGPSPLPADELKELLNSSPECSEIVREWLERGFLYV
LGEETVVVEEE*
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mRNA from alignment at chr6:368891..370863+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01170.1 ID=NO06G01170.1|Name=NO06G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1973bp|location=Sequence derived from alignment at chr6:368891..370863+ (Nannochloropsis oceanica)
CAGGCGTACTCTTGGGGATCGCTCTTCTCCACCCTAGCATCTTCTCCAAC
GTTACACCCAGCTACCACCATCATGCCACCGGGCCACATACCCCTCCTTT
GCGTGGCCTCGACAGTCGCAATGATGCTGCTACTACAAACCTCGCATGCC
TTCCTGGCCCTCCCAGTATTGTCACACGTCTCCAGTACAAGAAATATGCC
CAACCACAAACGCCAGCATTGCGCATCCTCCTCGTCCTTTTCTCATGACG
CCAAAACTATTCACTTGCCCGCCCCCCTGCGGAGTGGACAGGGGGGCTGC
CACAAAACAAGCACGTCTTATTCTTGCGTGAATTTTGGCAACAAAAGCCG
CTATTGATTCGACAGGCTTTTGATCCAGCTGTGGCGGTGGTGGGACCGAA
TGAGCTGCTATCGTTGGCATGCGATGACATGGTGACGTCGCGCTTGATCG
AGCACCGGCCACACAGCGGAAGAGACAAACAGGCTGGACAGGAGGAAGAT
GAAAAAGACAGTGAATGGAGTGTGCGGCAAGGACCTTTTGACGAGGAGGA
TTTTGAAGACGACCCGGAGGGGGGGGAGAGGACGTGGACGGTGTTGGTAC
AGGAGGTGGATAGGCATGTGCCTGAAGTGGCGGACTTGCTGCAATCCTTC
AGGTTTCTCCCAAACTGGCGGTTGGATGACATGTACGTTCACGAGAATTA
AATGACTGCGATTTATTGCCTAAAATTTCGAAATTCATTGCGAGCTCACT
TTGACAATCCGCGCTCACCAATTCCATTCCTTTCTTCCCTTCTCCGCCTC
CCCTCCCCGCCACTCACGCCCACATAACACACAGCATGATAAGTTATGCA
CCCCAGGCAGGCGGGATCGGCCCACATGTCGACAATTACGATGTTTTCCT
CCTCCAAAGCCATGGCACCCGTCGCTGGTCCATCCAAAACTCCCTTCTGT
CCGCCGCGGACGAACTCTCCTCCCTCCTTCCTAACAGCCCTGTCCGGGTT
CTGGGCACCTGGGAGGAGGACCACTCATGGGTGTTACGACCTGGGGACAT
GCTGTACCTTCCCCCCCGGGTTCCTCACAATGGCGTTAGTCTCGACAAAG
ACTGCATGACCTACTCGATTGGTTTTCGGGCGCCCACCCAGGCGGAGCTA
CTACATGCAGCGATCACTGCTGCTGCTGCTGCTGCTGCTGCGGCATCCGG
GCAAACTTTTTACAGCGATCAGTCTCTTGCCTTGCCGAGAGATGCGGGTG
AGATCACTCCCAACGCATTGAGTCAGTTAAAAGAGATGGTAAAAAAAGGT
ATGGCCTCTGTACTGGATGATGAGTATGTTTTAGCAAGATGGATGGGGAA
ACACCTGACGAGACCCAGGCAAACAAGGAGACAAAGAGTAAGGGAGGAGG
AGGAAGAAGGAAACGGGGAAGACGGGGAGGAGGGGGGAGGGGGATATCTA
GTAGAGATAGACAGGGAAGAAGCGGAGACGATTGTGCAGGAGTTGATGGA
AAGAGGGAAGGGGGAAGGAGAGAAGAAGGAGCAGTGGGGGGTCGTCTATC
GCGCGGAGGGTTTAAAATTTGCCCATGCATTGGAGAATAGTCTCTTGTTT
GTGGACGGACATGTGTGGGAGTTGAAGGACGAAGACGGGGAACGACGGTG
GAGGGTGTGTGCGTGCTTGACTGGAGGGCCGTCACCTTTGCCAGCGGATG
AATTGAAGGAGCTCCTTAATTCGAGCCCTGAGTGTTCTGAGATCGTGAGG
GAGTGGTTGGAACGAGGGTTCTTGTATGTTCTGGGTGAAGAAACAGTGGT
GGTGGAGGAGGAATGAATTTATTGAAAAAATTGAAAAAGTATACAAATGA
ATGAGAGCCCAAAAAATCGAGTTTTGATCATCCGAAATCATTTTACGTAC
TGTCATTGTTAAAAGTAGAATTAAACGGGGGGAAAAAAAAGAAGCAAATG
TTTGATGACGTCCGCTGAAGAGA
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Coding sequence (CDS) from alignment at chr6:368891..370863+

>NO06G01170.1 ID=NO06G01170.1|Name=NO06G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1236bp|location=Sequence derived from alignment at chr6:368891..370863+ (Nannochloropsis oceanica)
ATGGTGACGTCGCGCTTGATCGAGCACCGGCCACACAGCGGAAGAGACAA
ACAGGCTGGACAGGAGGAAGATGAAAAAGACAGTGAATGGAGTGTGCGGC
AAGGACCTTTTGACGAGGAGGATTTTGAAGACGACCCGGAGGGGGGGGAG
AGGACGTGGACGGTGTTGGTACAGGAGGTGGATAGGCATGTGCCTGAAGT
GGCGGACTTGCTGCAATCCTTCAGGTTTCTCCCAAACTGGCGGTTGGATG
ACATCATGATAAGTTATGCACCCCAGGCAGGCGGGATCGGCCCACATGTC
GACAATTACGATGTTTTCCTCCTCCAAAGCCATGGCACCCGTCGCTGGTC
CATCCAAAACTCCCTTCTGTCCGCCGCGGACGAACTCTCCTCCCTCCTTC
CTAACAGCCCTGTCCGGGTTCTGGGCACCTGGGAGGAGGACCACTCATGG
GTGTTACGACCTGGGGACATGCTGTACCTTCCCCCCCGGGTTCCTCACAA
TGGCGTTAGTCTCGACAAAGACTGCATGACCTACTCGATTGGTTTTCGGG
CGCCCACCCAGGCGGAGCTACTACATGCAGCGATCACTGCTGCTGCTGCT
GCTGCTGCTGCGGCATCCGGGCAAACTTTTTACAGCGATCAGTCTCTTGC
CTTGCCGAGAGATGCGGGTGAGATCACTCCCAACGCATTGAGTCAGTTAA
AAGAGATGGTAAAAAAAGGTATGGCCTCTGTACTGGATGATGAGTATGTT
TTAGCAAGATGGATGGGGAAACACCTGACGAGACCCAGGCAAACAAGGAG
ACAAAGAGTAAGGGAGGAGGAGGAAGAAGGAAACGGGGAAGACGGGGAGG
AGGGGGGAGGGGGATATCTAGTAGAGATAGACAGGGAAGAAGCGGAGACG
ATTGTGCAGGAGTTGATGGAAAGAGGGAAGGGGGAAGGAGAGAAGAAGGA
GCAGTGGGGGGTCGTCTATCGCGCGGAGGGTTTAAAATTTGCCCATGCAT
TGGAGAATAGTCTCTTGTTTGTGGACGGACATGTGTGGGAGTTGAAGGAC
GAAGACGGGGAACGACGGTGGAGGGTGTGTGCGTGCTTGACTGGAGGGCC
GTCACCTTTGCCAGCGGATGAATTGAAGGAGCTCCTTAATTCGAGCCCTG
AGTGTTCTGAGATCGTGAGGGAGTGGTTGGAACGAGGGTTCTTGTATGTT
CTGGGTGAAGAAACAGTGGTGGTGGAGGAGGAATGA
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Synonyms
Publications