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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:360416..362866 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G01130.1 vs.
Match: EWM26094.1 (wd repeat-containing protein 70 [Nannochloropsis gaditana]) HSP 1 Score: 955.7 bits (2469), Expect = 9.400e-275 Identity = 502/696 (72.13%), Postives = 568/696 (81.61%), Query Frame = 0
Query: 121 RTYILRLPSAAGDAADSMGHPAAIGGHRATASSTSARGAAGKEKEGEEGEAELDKGMLEQLPLSFGGSKKVGVAGSMSKSAMAEGIAEMMKEIEATEKKRLQEYEKEGKKAAAGVDGKVNGGGDESDNDEEGHGLKPLAGGNANSTPSSSASSASTAAAAAARGKREKEKEDVEGEEETPATVARRNQVPMSHEVSLRGHHKQITCLAMDPAGARVAVGGMDYKLLLYDFGGMDKSHKPFREFVPEDGNPVVGVSWSPTGDRLVVATGSTQAKVYDRDGVRLMVFTKGDPYITDLVHTKGHTMSLSATAWHPREKDTVMTTSLDGTIRLWDLQGPQTFDQLHNKRVIKAKSARSTRVAVTCGVFSPVADYVAAGCQDGSVQLFSLKKTNWIRPDICMRPAHGPEHHVTAVAFAHDGKTLASRGTDDCVRLWDIRKPQVPLKVFEGVTTFYDSSNVAFSPDGRLVCCGTNVPPLRKGEEVGGTERTGMLKFFEVGGDGLEAYLTVGVAPESSVTHLTWHPRLKQVVAGTSGGTTKVLYDPTFSVKGALMSSNRVKRKSDPMDAAPVGGVVGRIINPSALPMFRDDEEMGKKRKARMNRADPVKSKRPDLPVNGPGAQGRVSGMTNFTQYVMQTKQKNTILEEDPREAILKYAEKAREGTQLVGRAYAKTAPKAQFLEKTLEQEVEDMKEMEAEILRK 817
R I++ S AGDAA + G + ST R +E + LDK EQLPLSFGGSKKV ++SK+AMAEGIAEMMKEIEA E++R + ++G+ +E ++ ++ G +PL A+ PSSS+SS ++ A KR KE+ +E EEETPA ARR ++PMSHEV LRGH+KQITCLAMDP+GARV VGG D KLLLYDFGGMD+SHKPFREFVPEDGNPVVGV WSPTGDRLVVATGS+QAKV+DRDG+RL+ KGDPYITDLVHTKGHTMSLSA AWHPREK+T+MT S DGT+RLWDLQGPQ+FDQL NKRVIKA+SARSTRVAVTCGVFSPVADYVAAGCQDGSVQLFSL+KT+WI+PD+ MRPAHGP+ HVTAVAFA DGKTLASRGTDD VRLWDIRKPQ PLK EGV TFYDS+N+AFSPDGR++CCGTNVPP ++G TG LK+F+V G LEA LTVGVAP +SVT+LTWHPRLKQVV GTS G TKVLYDP+FSVKGALMSS RVKR SDPMDAAPVGGVVGRIINPSALPMFRDDEE GKK++AR++RADP+KSKRPDLPVNGPGAQGRVSGMTNFTQYVMQTKQKNT++EEDPREAILKYAEKA+EGTQLVGRAYAKTAPK FLEKTLEQEVEDMKEMEAEIL+K
Sbjct: 40 RAVIMQSSSIAGDAAMDLP-----GDGKNRTESTQKR---------DENDGTLDKTAFEQLPLSFGGSKKVNAPRALSKNAMAEGIAEMMKEIEAAERRRAEGEARQGEAMR---------NQEEDEDRQQTSGEEPLPS-EASVQPSSSSSSHQVSSLRPAPAKR-KEETQLE-EEETPAATARRYRIPMSHEVILRGHYKQITCLAMDPSGARVGVGGTDNKLLLYDFGGMDRSHKPFREFVPEDGNPVVGVGWSPTGDRLVVATGSSQAKVFDRDGIRLLTCIKGDPYITDLVHTKGHTMSLSAAAWHPREKETIMTASWDGTLRLWDLQGPQSFDQLLNKRVIKARSARSTRVAVTCGVFSPVADYVAAGCQDGSVQLFSLRKTSWIKPDVLMRPAHGPDQHVTAVAFAPDGKTLASRGTDDMVRLWDIRKPQAPLKTLEGVATFYDSANLAFSPDGRVLCCGTNVPPKQEG-------ATGTLKYFQVQGPSLEAVLTVGVAPGASVTNLTWHPRLKQVVCGTSSGATKVLYDPSFSVKGALMSSQRVKRPSDPMDAAPVGGVVGRIINPSALPMFRDDEETGKKKRARLDRADPIKSKRPDLPVNGPGAQGRVSGMTNFTQYVMQTKQKNTMMEEDPREAILKYAEKAKEGTQLVGRAYAKTAPKTPFLEKTLEQEVEDMKEMEAEILKK 702
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G01130.1 ID=NO06G01130.1|Name=NO06G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp
ATGGCCAGCGACTTACCGAGCTGGATAGCGCTGCCCGAGACAAAGGCTTT
CCCAGGAGCAGCCGCAGCACGCAAGGCCTTCTTCGACGTAATCAAGCCTG
GAGGCGGCACCGCGGACAAGGTGGGCCTAGGGAGAAAGGCCGCTCTCATC
TTTGGCCGGAATCCTGACTCGACCGACGTCTTGCTGGAGCATCCGTCCAT
TTCACGGCGTCATGCGGCGGTGCTGCACGACGGGAAGGGCGGGCTGTTTT
TATACGACTTTGGCTCGACGCACGGGACATTCCTAGACGGTAACAAGGTG
GATGGGCGGACACCTACCGAGTTGCAGGAAGGCAGCCGCGTCAAATTTGC
TGAATCTAGCCGGACGTATATACTACGTCTACCGTCGGCAGCTGGAGATG
CTGCTGATTCAATGGGACATCCTGCTGCTATTGGTGGACACCGAGCGACA
GCGTCAAGTACAAGTGCGAGGGGGGCAGCGGGCAAGGAGAAGGAAGGGGA
GGAGGGAGAGGCAGAGCTTGACAAGGGAATGCTGGAACAGTTGCCCTTAT
CATTCGGGGGGTCAAAGAAGGTGGGAGTGGCGGGTTCGATGAGCAAGAGT
GCCATGGCGGAGGGAATAGCGGAGATGATGAAAGAGATTGAGGCCACAGA
GAAAAAACGGCTACAGGAGTATGAGAAGGAGGGAAAAAAGGCTGCAGCAG
GTGTGGACGGGAAAGTAAATGGCGGGGGCGACGAGAGTGATAACGATGAG
GAGGGCCATGGGCTCAAGCCATTAGCAGGGGGCAATGCCAACAGTACGCC
CTCCTCTTCTGCCTCATCTGCTTCAACCGCTGCTGCCGCCGCCGCAAGAG
GGAAGCGGGAAAAAGAAAAGGAGGACGTGGAAGGGGAGGAAGAGACACCA
GCCACGGTGGCGCGACGGAATCAAGTGCCCATGTCACATGAAGTCAGCCT
GCGGGGGCATCACAAACAGATCACGTGCTTGGCCATGGATCCTGCAGGGG
CTCGAGTAGCCGTGGGGGGAATGGATTACAAATTGCTGTTGTATGATTTC
GGGGGAATGGACAAGAGCCATAAACCTTTTCGGGAATTTGTCCCTGAAGA
CGGAAATCCGGTGGTAGGGGTCAGTTGGAGTCCGACCGGGGATCGATTAG
TGGTGGCCACGGGCTCGACCCAGGCTAAGGTCTATGATCGGGATGGGGTG
CGTTTAATGGTCTTTACGAAAGGTGACCCGTACATCACTGACTTGGTGCA
CACGAAGGGGCACACAATGAGCTTATCGGCCACGGCATGGCATCCACGGG
AGAAAGACACGGTGATGACGACAAGCCTGGATGGGACTATCCGCCTCTGG
GACCTGCAAGGGCCGCAGACCTTCGACCAACTCCACAACAAACGAGTAAT
CAAAGCCAAATCAGCGCGTAGCACACGAGTGGCTGTGACCTGCGGCGTGT
TTTCTCCTGTTGCAGACTACGTCGCCGCGGGGTGTCAAGACGGAAGCGTG
CAATTGTTTTCGTTGAAAAAAACGAATTGGATCAGGCCCGACATATGCAT
GCGCCCGGCCCACGGACCCGAGCACCACGTAACGGCTGTGGCCTTCGCCC
ATGATGGAAAGACGTTGGCAAGTAGAGGAACAGACGATTGTGTGAGACTG
TGGGATATTCGTAAGCCGCAGGTACCCTTGAAAGTGTTCGAAGGTGTCAC
CACGTTTTACGACTCGAGCAATGTCGCTTTCTCGCCCGATGGGAGGTTGG
TATGTTGTGGGACTAATGTCCCTCCTCTTCGTAAGGGAGAAGAGGTGGGA
GGAACGGAGAGGACGGGAATGCTCAAGTTTTTTGAGGTGGGGGGTGACGG
ACTAGAGGCATATTTGACGGTGGGGGTGGCTCCCGAATCGAGTGTCACGC
ACCTGACTTGGCACCCGCGGTTAAAACAGGTAGTGGCCGGCACGAGTGGG
GGGACCACCAAGGTGTTGTATGACCCGACATTCAGCGTGAAGGGGGCCTT
GATGAGCAGTAACCGAGTCAAGCGCAAGAGTGACCCGATGGATGCTGCGC
CGGTGGGAGGGGTGGTGGGGAGAATTATTAATCCCTCGGCGTTGCCCATG
TTCAGGGACGACGAGGAAATGGGGAAGAAGCGGAAGGCGCGGATGAATCG
GGCCGATCCCGTAAAGAGCAAACGGCCAGACCTTCCGGTGAATGGCCCCG
GGGCACAGGGACGGGTGAGTGGAATGACAAATTTCACCCAGTACGTGATG
CAGACCAAGCAGAAGAACACGATTTTGGAGGAGGACCCGCGGGAGGCCAT
CTTAAAATACGCGGAAAAGGCCAGGGAGGGCACGCAGTTGGTGGGGAGGG
CGTATGCCAAAACAGCGCCCAAGGCCCAGTTCTTGGAGAAGACCCTGGAG
CAGGAGGTGGAGGATATGAAGGAGATGGAGGCGGAGATTTTGAGGAAGTA
G back to topprotein sequence of NO06G01130.1 >NO06G01130.1-protein ID=NO06G01130.1-protein|Name=NO06G01130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=817bp
MASDLPSWIALPETKAFPGAAAARKAFFDVIKPGGGTADKVGLGRKAALI
FGRNPDSTDVLLEHPSISRRHAAVLHDGKGGLFLYDFGSTHGTFLDGNKV
DGRTPTELQEGSRVKFAESSRTYILRLPSAAGDAADSMGHPAAIGGHRAT
ASSTSARGAAGKEKEGEEGEAELDKGMLEQLPLSFGGSKKVGVAGSMSKS
AMAEGIAEMMKEIEATEKKRLQEYEKEGKKAAAGVDGKVNGGGDESDNDE
EGHGLKPLAGGNANSTPSSSASSASTAAAAAARGKREKEKEDVEGEEETP
ATVARRNQVPMSHEVSLRGHHKQITCLAMDPAGARVAVGGMDYKLLLYDF
GGMDKSHKPFREFVPEDGNPVVGVSWSPTGDRLVVATGSTQAKVYDRDGV
RLMVFTKGDPYITDLVHTKGHTMSLSATAWHPREKDTVMTTSLDGTIRLW
DLQGPQTFDQLHNKRVIKAKSARSTRVAVTCGVFSPVADYVAAGCQDGSV
QLFSLKKTNWIRPDICMRPAHGPEHHVTAVAFAHDGKTLASRGTDDCVRL
WDIRKPQVPLKVFEGVTTFYDSSNVAFSPDGRLVCCGTNVPPLRKGEEVG
GTERTGMLKFFEVGGDGLEAYLTVGVAPESSVTHLTWHPRLKQVVAGTSG
GTTKVLYDPTFSVKGALMSSNRVKRKSDPMDAAPVGGVVGRIINPSALPM
FRDDEEMGKKRKARMNRADPVKSKRPDLPVNGPGAQGRVSGMTNFTQYVM
QTKQKNTILEEDPREAILKYAEKAREGTQLVGRAYAKTAPKAQFLEKTLE
QEVEDMKEMEAEILRK* back to topmRNA from alignment at chr6:360416..362866+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G01130.1 ID=NO06G01130.1|Name=NO06G01130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp|location=Sequence derived from alignment at chr6:360416..362866+ (Nannochloropsis oceanica)
ATGGCCAGCGACTTACCGAGCTGGATAGCGCTGCCCGAGACAAAGGCTTT
CCCAGGAGCAGCCGCAGCACGCAAGGCCTTCTTCGACGTAATCAAGCCTG
GAGGCGGCACCGCGGACAAGGTGGGCCTAGGGAGAAAGGCCGCTCTCATC
TTTGGCCGGAATCCTGACTCGACCGACGTCTTGCTGGAGCATCCGTCCAT
TTCACGGCGTCATGCGGCGGTGCTGCACGACGGGAAGGGCGGGCTGTTTT
TATACGACTTTGGCTCGACGCACGGGACATTCCTAGACGGTAACAAGGTG
GATGGGCGGACACCTACCGAGTTGCAGGAAGGCAGCCGCGTCAAATTTGC
TGAATCTAGCCGGACGTATATACTACGTCTACCGTCGGCAGCTGGAGATG
CTGCTGATTCAATGGGACATCCTGCTGCTATTGGTGGACACCGAGCGACA
GCGTCAAGTACAAGTGCGAGGGGGGCAGCGGGCAAGGAGAAGGAAGGGGA
GGAGGGAGAGGCAGAGCTTGACAAGGGAATGCTGGAACAGTTGCCCTTAT
CATTCGGGGGGTCAAAGAAGGTGGGAGTGGCGGGTTCGATGAGCAAGAGT
GCCATGGCGGAGGGAATAGCGGAGATGATGAAAGAGATTGAGGCCACAGA
GAAAAAACGGCTACAGGAGTATGAGAAGGAGGGAAAAAAGGCTGCAGCAG
GTGTGGACGGGAAAGTAAATGGCGGGGGCGACGAGAGTGATAACGATGAG
GAGGGCCATGGGCTCAAGCCATTAGCAGGGGGCAATGCCAACAGTACGCC
CTCCTCTTCTGCCTCATCTGCTTCAACCGCTGCTGCCGCCGCCGCAAGAG
GGAAGCGGGAAAAAGAAAAGGAGGACGTGGAAGGGGAGGAAGAGACACCA
GCCACGGTGGCGCGACGGAATCAAGTGCCCATGTCACATGAAGTCAGCCT
GCGGGGGCATCACAAACAGATCACGTGCTTGGCCATGGATCCTGCAGGGG
CTCGAGTAGCCGTGGGGGGAATGGATTACAAATTGCTGTTGTATGATTTC
GGGGGAATGGACAAGAGCCATAAACCTTTTCGGGAATTTGTCCCTGAAGA
CGGAAATCCGGTGGTAGGGGTCAGTTGGAGTCCGACCGGGGATCGATTAG
TGGTGGCCACGGGCTCGACCCAGGCTAAGGTCTATGATCGGGATGGGGTG
CGTTTAATGGTCTTTACGAAAGGTGACCCGTACATCACTGACTTGGTGCA
CACGAAGGGGCACACAATGAGCTTATCGGCCACGGCATGGCATCCACGGG
AGAAAGACACGGTGATGACGACAAGCCTGGATGGGACTATCCGCCTCTGG
GACCTGCAAGGGCCGCAGACCTTCGACCAACTCCACAACAAACGAGTAAT
CAAAGCCAAATCAGCGCGTAGCACACGAGTGGCTGTGACCTGCGGCGTGT
TTTCTCCTGTTGCAGACTACGTCGCCGCGGGGTGTCAAGACGGAAGCGTG
CAATTGTTTTCGTTGAAAAAAACGAATTGGATCAGGCCCGACATATGCAT
GCGCCCGGCCCACGGACCCGAGCACCACGTAACGGCTGTGGCCTTCGCCC
ATGATGGAAAGACGTTGGCAAGTAGAGGAACAGACGATTGTGTGAGACTG
TGGGATATTCGTAAGCCGCAGGTACCCTTGAAAGTGTTCGAAGGTGTCAC
CACGTTTTACGACTCGAGCAATGTCGCTTTCTCGCCCGATGGGAGGTTGG
TATGTTGTGGGACTAATGTCCCTCCTCTTCGTAAGGGAGAAGAGGTGGGA
GGAACGGAGAGGACGGGAATGCTCAAGTTTTTTGAGGTGGGGGGTGACGG
ACTAGAGGCATATTTGACGGTGGGGGTGGCTCCCGAATCGAGTGTCACGC
ACCTGACTTGGCACCCGCGGTTAAAACAGGTAGTGGCCGGCACGAGTGGG
GGGACCACCAAGGTGTTGTATGACCCGACATTCAGCGTGAAGGGGGCCTT
GATGAGCAGTAACCGAGTCAAGCGCAAGAGTGACCCGATGGATGCTGCGC
CGGTGGGAGGGGTGGTGGGGAGAATTATTAATCCCTCGGCGTTGCCCATG
TTCAGGGACGACGAGGAAATGGGGAAGAAGCGGAAGGCGCGGATGAATCG
GGCCGATCCCGTAAAGAGCAAACGGCCAGACCTTCCGGTGAATGGCCCCG
GGGCACAGGGACGGGTGAGTGGAATGACAAATTTCACCCAGTACGTGATG
CAGACCAAGCAGAAGAACACGATTTTGGAGGAGGACCCGCGGGAGGCCAT
CTTAAAATACGCGGAAAAGGCCAGGGAGGGCACGCAGTTGGTGGGGAGGG
CGTATGCCAAAACAGCGCCCAAGGCCCAGTTCTTGGAGAAGACCCTGGAG
CAGGAGGTGGAGGATATGAAGGAGATGGAGGCGGAGATTTTGAGGAAGTA
G back to topCoding sequence (CDS) from alignment at chr6:360416..362866+ >NO06G01130.1 ID=NO06G01130.1|Name=NO06G01130.1|organism=Nannochloropsis oceanica|type=CDS|length=2451bp|location=Sequence derived from alignment at chr6:360416..362866+ (Nannochloropsis oceanica)
ATGGCCAGCGACTTACCGAGCTGGATAGCGCTGCCCGAGACAAAGGCTTT
CCCAGGAGCAGCCGCAGCACGCAAGGCCTTCTTCGACGTAATCAAGCCTG
GAGGCGGCACCGCGGACAAGGTGGGCCTAGGGAGAAAGGCCGCTCTCATC
TTTGGCCGGAATCCTGACTCGACCGACGTCTTGCTGGAGCATCCGTCCAT
TTCACGGCGTCATGCGGCGGTGCTGCACGACGGGAAGGGCGGGCTGTTTT
TATACGACTTTGGCTCGACGCACGGGACATTCCTAGACGGTAACAAGGTG
GATGGGCGGACACCTACCGAGTTGCAGGAAGGCAGCCGCGTCAAATTTGC
TGAATCTAGCCGGACGTATATACTACGTCTACCGTCGGCAGCTGGAGATG
CTGCTGATTCAATGGGACATCCTGCTGCTATTGGTGGACACCGAGCGACA
GCGTCAAGTACAAGTGCGAGGGGGGCAGCGGGCAAGGAGAAGGAAGGGGA
GGAGGGAGAGGCAGAGCTTGACAAGGGAATGCTGGAACAGTTGCCCTTAT
CATTCGGGGGGTCAAAGAAGGTGGGAGTGGCGGGTTCGATGAGCAAGAGT
GCCATGGCGGAGGGAATAGCGGAGATGATGAAAGAGATTGAGGCCACAGA
GAAAAAACGGCTACAGGAGTATGAGAAGGAGGGAAAAAAGGCTGCAGCAG
GTGTGGACGGGAAAGTAAATGGCGGGGGCGACGAGAGTGATAACGATGAG
GAGGGCCATGGGCTCAAGCCATTAGCAGGGGGCAATGCCAACAGTACGCC
CTCCTCTTCTGCCTCATCTGCTTCAACCGCTGCTGCCGCCGCCGCAAGAG
GGAAGCGGGAAAAAGAAAAGGAGGACGTGGAAGGGGAGGAAGAGACACCA
GCCACGGTGGCGCGACGGAATCAAGTGCCCATGTCACATGAAGTCAGCCT
GCGGGGGCATCACAAACAGATCACGTGCTTGGCCATGGATCCTGCAGGGG
CTCGAGTAGCCGTGGGGGGAATGGATTACAAATTGCTGTTGTATGATTTC
GGGGGAATGGACAAGAGCCATAAACCTTTTCGGGAATTTGTCCCTGAAGA
CGGAAATCCGGTGGTAGGGGTCAGTTGGAGTCCGACCGGGGATCGATTAG
TGGTGGCCACGGGCTCGACCCAGGCTAAGGTCTATGATCGGGATGGGGTG
CGTTTAATGGTCTTTACGAAAGGTGACCCGTACATCACTGACTTGGTGCA
CACGAAGGGGCACACAATGAGCTTATCGGCCACGGCATGGCATCCACGGG
AGAAAGACACGGTGATGACGACAAGCCTGGATGGGACTATCCGCCTCTGG
GACCTGCAAGGGCCGCAGACCTTCGACCAACTCCACAACAAACGAGTAAT
CAAAGCCAAATCAGCGCGTAGCACACGAGTGGCTGTGACCTGCGGCGTGT
TTTCTCCTGTTGCAGACTACGTCGCCGCGGGGTGTCAAGACGGAAGCGTG
CAATTGTTTTCGTTGAAAAAAACGAATTGGATCAGGCCCGACATATGCAT
GCGCCCGGCCCACGGACCCGAGCACCACGTAACGGCTGTGGCCTTCGCCC
ATGATGGAAAGACGTTGGCAAGTAGAGGAACAGACGATTGTGTGAGACTG
TGGGATATTCGTAAGCCGCAGGTACCCTTGAAAGTGTTCGAAGGTGTCAC
CACGTTTTACGACTCGAGCAATGTCGCTTTCTCGCCCGATGGGAGGTTGG
TATGTTGTGGGACTAATGTCCCTCCTCTTCGTAAGGGAGAAGAGGTGGGA
GGAACGGAGAGGACGGGAATGCTCAAGTTTTTTGAGGTGGGGGGTGACGG
ACTAGAGGCATATTTGACGGTGGGGGTGGCTCCCGAATCGAGTGTCACGC
ACCTGACTTGGCACCCGCGGTTAAAACAGGTAGTGGCCGGCACGAGTGGG
GGGACCACCAAGGTGTTGTATGACCCGACATTCAGCGTGAAGGGGGCCTT
GATGAGCAGTAACCGAGTCAAGCGCAAGAGTGACCCGATGGATGCTGCGC
CGGTGGGAGGGGTGGTGGGGAGAATTATTAATCCCTCGGCGTTGCCCATG
TTCAGGGACGACGAGGAAATGGGGAAGAAGCGGAAGGCGCGGATGAATCG
GGCCGATCCCGTAAAGAGCAAACGGCCAGACCTTCCGGTGAATGGCCCCG
GGGCACAGGGACGGGTGAGTGGAATGACAAATTTCACCCAGTACGTGATG
CAGACCAAGCAGAAGAACACGATTTTGGAGGAGGACCCGCGGGAGGCCAT
CTTAAAATACGCGGAAAAGGCCAGGGAGGGCACGCAGTTGGTGGGGAGGG
CGTATGCCAAAACAGCGCCCAAGGCCCAGTTCTTGGAGAAGACCCTGGAG
CAGGAGGTGGAGGATATGAAGGAGATGGAGGCGGAGATTTTGAGGAAGTA
G back to top
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