NO06G01090.1, NO06G01090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01090.1
Unique NameNO06G01090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr6:351283..352452 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:351283..352452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01090.1 vs.
Match: EWM26155.1 (Hrf1 [Nannochloropsis gaditana])

HSP 1 Score: 479.2 bits (1232), Expect = 1.200e-131
Identity = 278/351 (79.20%), Postives = 296/351 (84.33%), Query Frame = 0 
Query:   27 QHQAYNPAQNGVPQQQQQQQQQQQQQQQYQPHQQLQPGVNVFNPGAYKQQQQQQQHLQQQQPQQQQQQ---APYGGGPPSTFGRHPGGQQNMDFGLDAITAAANSQAFSMGVGMGQDYLNASVNRYIPWFTSVWQGLKYYFAVNHHYVKRKLFTLVFPFRKRHWRREAKDDGDVGVGG--GGQIGSSSGGVGGGRPHYQVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTKNSFTPEVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPASLLDLLAVTGYKYVALNINMLLGLNLGSRIYLAVMIYTGLAMAYFSLKTFAQAVRLAGPRDLASAPVRVELMVLGFALLQFFS 373
            QH    P Q+       QQQ     Q  +  HQQLQPGVNVFNPGAYKQQQQ QQ  QQQ+PQQQQ+Q   APYGGGPPS+FG+  G Q NMDFGL+AITAAANSQAFSMGVGMGQ+YLNASV+RY PW TSVW GLKYYFAVNHHYVKRKLFTLVFP+RKRHWRR+ KD G  G  G  G Q G++       RP YQVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTKNSFTPEVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPA+LLDLLAVTGYKYVALN NM+LGLNLG R+YLA M+YTGLAMAYFSLKTFAQAVRLAGPRDLASAPVRVELMVLGFAL+QFFS
Sbjct:    7 QHWHQFPPQHANQDYSTQQQYGGHAQVPHAAHQQLQPGVNVFNPGAYKQQQQAQQ--QQQEPQQQQEQFRRAPYGGGPPSSFGQ--GHQPNMDFGLNAITAAANSQAFSMGVGMGQEYLNASVSRYTPWVTSVWHGLKYYFAVNHHYVKRKLFTLVFPYRKRHWRRQMKDSGAAGSSGAYGQQGGNADSASAMYRPQYQVPMLDENAPDLYIPLMAFVTYVLVTGYAKGTKNSFTPEVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPATLLDLLAVTGYKYVALNFNMVLGLNLGPRVYLAAMVYTGLAMAYFSLKTFAQAVRLAGPRDLASAPVRVELMVLGFALMQFFS 353
The following BLAST results are available for this feature:
BLAST of NO06G01090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26155.11.200e-13179.20Hrf1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01090NO06G01090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01090.1NO06G01090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01090.1.cds1NO06G01090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01090.1 ID=NO06G01090.1|Name=NO06G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp
ATGCATCAGCACGTGCCCATTGAAGAGAACCAGCCTTGGCACCAGTCCCA
GTACCAGCAGCAGTCACGACAAACGCAGCAACACCAGGCGTACAACCCTG
CCCAGAATGGGGTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAATACCAGCCCCACCAACAACTGCAGCCAGGCGTGAATGT
CTTCAACCCTGGGGCCTACAAGCAGCAGCAGCAGCAGCAACAGCATCTAC
AGCAGCAACAACCACAACAGCAGCAACAGCAGGCGCCCTATGGAGGAGGG
CCGCCGTCGACGTTTGGGAGACATCCGGGCGGGCAGCAAAACATGGACTT
TGGCCTGGACGCTATCACTGCCGCGGCCAACAGCCAAGCGTTTAGCATGG
GAGTGGGAATGGGGCAAGATTACCTGAATGCGAGTGTGAATCGGTACATT
CCTTGGTTTACCTCTGTGTGGCAGGGCCTCAAATATTACTTTGCCGTAAA
TCACCACTATGTGAAACGTAAGCTTTTCACTTTGGTCTTCCCCTTCCGCA
AGCGGCACTGGAGAAGAGAGGCCAAGGACGATGGTGACGTGGGAGTAGGG
GGTGGAGGGCAGATAGGGAGTTCGAGTGGAGGAGTGGGGGGAGGAAGGCC
GCATTATCAGGTGCCGATGCTGGATGAGAATGCGCCCGACCTCTACATTC
CGCTGATGGCCTTCGTGACGTATGTGCTGGTGACGGGCTATGCGAAGGGG
ACAAAGAACTCGTTCACACCTGAGGTGTTGGTGGAGGTGACATCGTCGTG
CTTGGTGATGCAGCTGTTGGAGATAGCAGTTATCCGTCTGGGTCTTTACT
TACTCCAAGCCCCCGCCTCCCTCCTTGACCTTCTGGCCGTTACGGGTTAC
AAATACGTCGCTCTAAACATCAACATGCTCCTTGGCCTTAACCTCGGGTC
GCGCATTTATCTCGCTGTCATGATTTATACGGGGCTAGCCATGGCTTACT
TTTCTCTCAAGACCTTTGCGCAAGCTGTGCGCCTGGCAGGGCCGCGGGAC
CTAGCCTCGGCCCCTGTCCGGGTTGAGCTGATGGTGTTGGGGTTTGCTTT
GCTTCAATTTTTTTCCGTGTGGTGGTTAGGATATTCTGGGGATTTAAAGA
CGATGCCGACTAATGTATAA
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protein sequence of NO06G01090.1

>NO06G01090.1-protein ID=NO06G01090.1-protein|Name=NO06G01090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MHQHVPIEENQPWHQSQYQQQSRQTQQHQAYNPAQNGVPQQQQQQQQQQQ
QQQQYQPHQQLQPGVNVFNPGAYKQQQQQQQHLQQQQPQQQQQQAPYGGG
PPSTFGRHPGGQQNMDFGLDAITAAANSQAFSMGVGMGQDYLNASVNRYI
PWFTSVWQGLKYYFAVNHHYVKRKLFTLVFPFRKRHWRREAKDDGDVGVG
GGGQIGSSSGGVGGGRPHYQVPMLDENAPDLYIPLMAFVTYVLVTGYAKG
TKNSFTPEVLVEVTSSCLVMQLLEIAVIRLGLYLLQAPASLLDLLAVTGY
KYVALNINMLLGLNLGSRIYLAVMIYTGLAMAYFSLKTFAQAVRLAGPRD
LASAPVRVELMVLGFALLQFFSVWWLGYSGDLKTMPTNV*
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mRNA from alignment at chr6:351283..352452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01090.1 ID=NO06G01090.1|Name=NO06G01090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1170bp|location=Sequence derived from alignment at chr6:351283..352452- (Nannochloropsis oceanica)
ATGCATCAGCACGTGCCCATTGAAGAGAACCAGCCTTGGCACCAGTCCCA
GTACCAGCAGCAGTCACGACAAACGCAGCAACACCAGGCGTACAACCCTG
CCCAGAATGGGGTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAATACCAGCCCCACCAACAACTGCAGCCAGGCGTGAATGT
CTTCAACCCTGGGGCCTACAAGCAGCAGCAGCAGCAGCAACAGCATCTAC
AGCAGCAACAACCACAACAGCAGCAACAGCAGGCGCCCTATGGAGGAGGG
CCGCCGTCGACGTTTGGGAGACATCCGGGCGGGCAGCAAAACATGGACTT
TGGCCTGGACGCTATCACTGCCGCGGCCAACAGCCAAGCGTTTAGCATGG
GAGTGGGAATGGGGCAAGATTACCTGAATGCGAGTGTGAATCGGTACATT
CCTTGGTTTACCTCTGTGTGGCAGGGCCTCAAATATTACTTTGCCGTAAA
TCACCACTATGTGAAACGTAAGCTTTTCACTTTGGTCTTCCCCTTCCGCA
AGCGGCACTGGAGAAGAGAGGCCAAGGACGATGGTGACGTGGGAGTAGGG
GGTGGAGGGCAGATAGGGAGTTCGAGTGGAGGAGTGGGGGGAGGAAGGCC
GCATTATCAGGTGCCGATGCTGGATGAGAATGCGCCCGACCTCTACATTC
CGCTGATGGCCTTCGTGACGTATGTGCTGGTGACGGGCTATGCGAAGGGG
ACAAAGAACTCGTTCACACCTGAGGTGTTGGTGGAGGTGACATCGTCGTG
CTTGGTGATGCAGCTGTTGGAGATAGCAGTTATCCGTCTGGGTCTTTACT
TACTCCAAGCCCCCGCCTCCCTCCTTGACCTTCTGGCCGTTACGGGTTAC
AAATACGTCGCTCTAAACATCAACATGCTCCTTGGCCTTAACCTCGGGTC
GCGCATTTATCTCGCTGTCATGATTTATACGGGGCTAGCCATGGCTTACT
TTTCTCTCAAGACCTTTGCGCAAGCTGTGCGCCTGGCAGGGCCGCGGGAC
CTAGCCTCGGCCCCTGTCCGGGTTGAGCTGATGGTGTTGGGGTTTGCTTT
GCTTCAATTTTTTTCCGTGTGGTGGTTAGGATATTCTGGGGATTTAAAGA
CGATGCCGACTAATGTATAA
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Coding sequence (CDS) from alignment at chr6:351283..352452-

>NO06G01090.1 ID=NO06G01090.1|Name=NO06G01090.1|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at chr6:351283..352452- (Nannochloropsis oceanica)
ATGCATCAGCACGTGCCCATTGAAGAGAACCAGCCTTGGCACCAGTCCCA
GTACCAGCAGCAGTCACGACAAACGCAGCAACACCAGGCGTACAACCCTG
CCCAGAATGGGGTGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAACAATACCAGCCCCACCAACAACTGCAGCCAGGCGTGAATGT
CTTCAACCCTGGGGCCTACAAGCAGCAGCAGCAGCAGCAACAGCATCTAC
AGCAGCAACAACCACAACAGCAGCAACAGCAGGCGCCCTATGGAGGAGGG
CCGCCGTCGACGTTTGGGAGACATCCGGGCGGGCAGCAAAACATGGACTT
TGGCCTGGACGCTATCACTGCCGCGGCCAACAGCCAAGCGTTTAGCATGG
GAGTGGGAATGGGGCAAGATTACCTGAATGCGAGTGTGAATCGGTACATT
CCTTGGTTTACCTCTGTGTGGCAGGGCCTCAAATATTACTTTGCCGTAAA
TCACCACTATGTGAAACGTAAGCTTTTCACTTTGGTCTTCCCCTTCCGCA
AGCGGCACTGGAGAAGAGAGGCCAAGGACGATGGTGACGTGGGAGTAGGG
GGTGGAGGGCAGATAGGGAGTTCGAGTGGAGGAGTGGGGGGAGGAAGGCC
GCATTATCAGGTGCCGATGCTGGATGAGAATGCGCCCGACCTCTACATTC
CGCTGATGGCCTTCGTGACGTATGTGCTGGTGACGGGCTATGCGAAGGGG
ACAAAGAACTCGTTCACACCTGAGGTGTTGGTGGAGGTGACATCGTCGTG
CTTGGTGATGCAGCTGTTGGAGATAGCAGTTATCCGTCTGGGTCTTTACT
TACTCCAAGCCCCCGCCTCCCTCCTTGACCTTCTGGCCGTTACGGGTTAC
AAATACGTCGCTCTAAACATCAACATGCTCCTTGGCCTTAACCTCGGGTC
GCGCATTTATCTCGCTGTCATGATTTATACGGGGCTAGCCATGGCTTACT
TTTCTCTCAAGACCTTTGCGCAAGCTGTGCGCCTGGCAGGGCCGCGGGAC
CTAGCCTCGGCCCCTGTCCGGGTTGAGCTGATGGTGTTGGGGTTTGCTTT
GCTTCAATTTTTTTCCGTGTGGTGGTTAGGATATTCTGGGGATTTAAAGA
CGATGCCGACTAATGTATAA
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Synonyms
Publications