NO06G01060.2, NO06G01060.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01060.2
Unique NameNO06G01060.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1964
Alignment locationchr6:340635..343070 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:340635..343070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO06G01060.2 vs.
Match: EWM26113.1 (phosphoglycerate kinase [Nannochloropsis gaditana])

HSP 1 Score: 609.8 bits (1571), Expect = 6.300e-171
Identity = 308/349 (88.25%), Postives = 328/349 (93.98%), Query Frame = 0
Query:   57 EKEARVILCSHLGRPKGVTESLRLGPVAARLSELLGTDVVYLKDCVGDEIESSVAALTPGQVALLENVRFYPEEEKNAPDFAKKLARLADVYVNDAFGTAHRAHASTEGVAKLVKATCAGFLMEKELDYLDGAVKNPKRPFAAIVGGSKVSTKITVVEALINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLELAKKLEIIAKEKGVKLVLPTDVVIADKFSADAESKVVPATEIPDGWMGLDNGPETTKMIQAELADCKTIIWNGPMGVFEFDKFATGTSAIAQTMAELTSKGATTIVGGGDSVAAVEKAGLGEKLSHVSTGGGASLEMLEGKVLPGVAAIQDAK 406
            EK ARV+LCSHLGRPKGVTESLR+ PVA RLSELLG++V Y+KDCVG+E+E  V AL+ GQV LLENVRFY EEEKNAP+FA KLARLADVYVNDAFGTAHRAHASTEG+AKLVK TCAGFLMEKEL YLDGAV  P RPFAAIVGGSKVSTKITVVE LINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLELAKKLE +AKEKGVKL+LPTDVVIADKFSADA+SKVVPATEIPDGWMGLDNGPETTKMIQAELADCKTIIWNGPMGVFEF+KFA GTSAIA+T+AELTSKGATTIVGGGDSVAAVE+AGL +KLSHVSTGGGASLEMLEG+ LPGVAAIQDA+
Sbjct:   85 EKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVSTKITVVETLINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDFLELAKKLESMAKEKGVKLILPTDVVIADKFSADAQSKVVPATEIPDGWMGLDNGPETTKMIQAELADCKTIIWNGPMGVFEFEKFAAGTSAIAKTLAELTSKGATTIVGGGDSVAAVEQAGLADKLSHVSTGGGASLEMLEGRTLPGVAAIQDAQ 433          
The following BLAST results are available for this feature:
BLAST of NO06G01060.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26113.16.300e-17188.25phosphoglycerate kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01060NO06G01060Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01060.2NO06G01060.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01060.2.cds1NO06G01060.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.2.cds2NO06G01060.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G01060.2.cds3NO06G01060.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01060.2 ID=NO06G01060.2|Name=NO06G01060.2|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp
ACAGGGCCTCCAGTTTCTCGTTCTTCTCTCAAGCAAATCGCTTCAAAAAC
CCGCCGTCTTCCATCCATTATGTCTGGAAAGGAGACGCTCAAGAGCCTGG
CCAGTAATACTGAGCTTAAGGGCGAACGAGTTTTCGTCCGCGTTGATTTC
AATGTCCCTCTTGATAAGGAGTCCAAGGTCACGGACGACACTCGCATCCG
CGCCGCTCTCCCCACCATCAAGTTCCTGGTGGTACGTCCCTATTTTGATT
TGCCATGTTGGAGGCGCAGCGTCCTGACTGCCTAAACCGCCACGGCGCCC
CCTTATTTTATATTCTCGTATGCGACGGTGCTGCACATGTGCAAATTTCA
CAATTGGACCAGTCACTACTTCAAGGACCAAGTATTTCCAGCTGCAGGCA
CCCCTTCTCATTGCGCACAAAATCATTCACTCATTTTCCTCTCCCATCTC
CGCTTCCCATCTTCTTACCAATCTCCCAACCGAACAGGAAAAAGAGGCCC
GCGTCATCCTCTGTAGTCACCTCGGCCGTCCAAAGGGCGTGACTGAATCC
CTGCGCCTGGGTCCTGTCGCTGCCCGCCTCTCCGAGCTCTTAGGCACAGA
CGTTGTGTACCTCAAAGACTGTGTGGGCGACGAAATCGAGTCGTCTGTCG
CTGCCCTCACTCCGGGACAAGTTGCCCTGTTGGAGAACGTGCGTTTCTAT
CCGGAGGAGGAGAAGAATGCGCCGGACTTTGCTAAGAAGCTCGCGAGGCT
TGCCGATGTGTATGTCAATGACGCGTTCGGGACGGCGCACCGTGCGCATG
CGAGTACCGAGGGGGTTGCCAAGCTCGTGAAGGCGACGTGTGCCGGTTTT
TTGATGGAAAAGGAGTTGGACTATCTGGATGGGGCGGTCAAGAACCCGAA
GAGACCTTTTGCAGCAATTGTGGGGGGATCCAAGGTCTCGACCAAAATCA
CGGTGGTGGAGGCCCTCATCAACAAGGTTGACAAGCTCATCATCGGCGGG
GGCATGGTCTTCACCTTCCTCAAGGCCCAGGGCCACGGGGTCGGTTCATC
CCTCGTGGAAGAGGATTTCCTTGAGCTCGCAAAGAAATTGGAAATCATCG
CCAAGGAGAAAGGAGTCAAGCTCGTTCTTCCCACCGACGTGGTGATTGCT
GATAAATTTTCTGCCGATGCGGAAAGCAAAGTGGTGCCCGCGACTGAGAT
CCCCGACGGGTGGATGGGCCTCGACAACGGCCCGGAGACGACCAAGATGA
TCCAGGCGGAGCTCGCGGACTGCAAGACCATCATCTGGAATGGTCCCATG
GGCGTGTTTGAGTTCGACAAATTCGCCACAGGCACCAGCGCGATTGCCCA
GACTATGGCGGAATTGACGTCCAAGGGCGCTACTACTATTGTGGGTGGAG
GGGATTCAGTGGCTGCTGTGGAGAAGGCAGGACTGGGGGAAAAGTTGTCG
CATGTCTCGACGGGGGGTGGGGCCTCGTTGGAGATGCTGGAAGGGAAGGT
GTTGCCGGGTGTGGCGGCGATCCAGGATGCGAAGTGAAGGGGGGATCGGG
AGGGAGGAAAGGAGGGAGGAACAAGGAGTTTGCTTTAGGTGGGATTGAGA
ATGAGTGTGTGGGGGGGCTATAGTAAGAGAACAAGGATTTCTGTTTGGAA
GTCAAGGAATCTAGTATTTTGAGTTATGGAAGAGTTTGACGGAAAGTGTT
GTGACTGAAAGGCGATCAGGGTAGAAAACACGATCAAACGTGAAGAACTC
GGACGAGATAATAAGAGCAGAAGAGAGGCGAGAGGAAGAGGGAAGTGGAA
GATGATTGTGGTGGTATTTATGCCGTCACAAGCGACAGACAGCAGAGAAA
AAAGGGGCGGAAGAATGAAGTGACGACGACACGCTTTGCCTGTATTTGCT
TGGCCCGTTTCTCTCCCGTAGGCACTCATTCGCCCACCCCGAAACGGTGT
GTTTTGGGGAAGAG
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protein sequence of NO06G01060.2

>NO06G01060.2-protein ID=NO06G01060.2-protein|Name=NO06G01060.2|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MRRCCTCANFTIGPVTTSRTKYFQLQAPLLIAHKIIHSFSSPISASHLLT
NLPTEQEKEARVILCSHLGRPKGVTESLRLGPVAARLSELLGTDVVYLKD
CVGDEIESSVAALTPGQVALLENVRFYPEEEKNAPDFAKKLARLADVYVN
DAFGTAHRAHASTEGVAKLVKATCAGFLMEKELDYLDGAVKNPKRPFAAI
VGGSKVSTKITVVEALINKVDKLIIGGGMVFTFLKAQGHGVGSSLVEEDF
LELAKKLEIIAKEKGVKLVLPTDVVIADKFSADAESKVVPATEIPDGWMG
LDNGPETTKMIQAELADCKTIIWNGPMGVFEFDKFATGTSAIAQTMAELT
SKGATTIVGGGDSVAAVEKAGLGEKLSHVSTGGGASLEMLEGKVLPGVAA
IQDAK*
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mRNA from alignment at chr6:340635..343070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01060.2 ID=NO06G01060.2|Name=NO06G01060.2|organism=Nannochloropsis oceanica|type=mRNA|length=2436bp|location=Sequence derived from alignment at chr6:340635..343070+ (Nannochloropsis oceanica)
ACAGGGCCTCCAGTTTCTCGTTCTTCTCTCAAGCAAATCGCTTCAAAAAC CCGCCGTCTTCCATCCATTATGTCTGGTACGTCTCGTGCCACCGTCGCTC CAACCCGCACGCACCTCATGGAGCAAATAGCGCCGCTAACGCATTGACAC ACATCTCTATTACCTATAATATACAGGAAAGGAGACGCTCAAGAGCCTGG CCAGTAATACTGAGCTTAAGGGCGAACGAGTTTTCGTCCGCGTTGATTTC AATGGTACGTACTTGTGGACATAACCCACATGCCCTCCTATGTCTCATAC CATTTCTCCCTACACACACAGTCCCTCTTGATAAGGAGTCCAAGGTCACG GACGACACTCGCATCCGCGCCGCTCTCCCCACCATCAAGTTCCTGGTGGT ACGTCCCTATTTTGATTTGCCATGTTGGAGGCGCAGCGTCCTGACTGCCT AAACCGCCACGGCGCCCCCTTATTTTATATTCTCGTATGCGACGGTGCTG CACATGTGCAAATTTCACAATTGGACCAGTCACTACTTCAAGGACCAAGT ATTTCCAGCTGCAGGCACCCCTTCTCATTGCGCACAAAATCATTCACTCA TTTTCCTCTCCCATCTCCGCTTCCCATCTTCTTACCAATCTCCCAACCGA ACAGGAAAAAGAGGCCCGCGTCATCCTCTGTAGTCACCTCGGCCGTCCAA AGGGCGTGACTGAATCCCTGCGCCTGGGTCCTGTCGCTGCCCGCCTCTCC GAGCTCTTAGGCACAGACGTTGTGTACCTCAAAGACTGTGTGGGCGACGA AATCGAGTCGTCTGTCGCTGCCCTCACTCCGGGACAAGTTGCCCTGTTGG AGAACGTGCGTTTCTATCCGGAGGAGGAGAAGAATGCGCCGGACTTTGCT AAGAAGCTCGCGAGGCTTGCCGATGTGTATGTCAATGACGCGTTCGGGAC GGCGCACCGTGCGCATGCGAGTACCGAGGGGGTTGCCAAGCTCGTGAAGG CGACGTGTGCCGGTTTTTTGATGGAAAAGGAGTTGGACTATCTGGATGGG GCGGTCAAGAACCCGAAGAGACCTTTTGCAGCAATTGTGGGGGGATCCAA GGTAAGCGGAGAAAGGAGGGAGGGATGAGGGATGGGAAGAATGTGTGTGA GCCTTTTCTGACAGGCTACCACCTATCAACCTTTGCTGATCAGTCTCCTT TCTTTCTCATCCTCTCTCCCTTGCGGTATCAGGTCTCGACCAAAATCACG GTGGTGGAGGCCCTCATCAACAAGGTTGACAAGCTCATCATCGGCGGGGG CATGGTCTTCACCTTCCTCAAGGCCCAGGGCCACGGGGTGAGTCCTTCTT TCCTGCTTTCTTCTCTTCTCTCCCCCTTCGATATTTTTTAAACTCATGTG CATTTTTTCTTCAGCTAATGTGCTTCAGGTATATATTGTGCGTGTTCTCA ATTTGCTCACCCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCC TCCCTCTCCAGGTCGGTTCATCCCTCGTGGAAGAGGATTTCCTTGAGCTC GCAAAGAAATTGGAAATCATCGCCAAGGAGAAAGGAGTCAAGCTCGTTCT TCCCACCGACGTGGTGATTGCTGATAAATTTTCTGCCGATGCGGAAAGCA AAGTGGTGCCCGCGACTGAGATCCCCGACGGGTGGATGGGCCTCGACAAC GGCCCGGAGACGACCAAGATGATCCAGGCGGAGCTCGCGGACTGCAAGAC CATCATCTGGAATGGTCCCATGGGCGTGTTTGAGTTCGACAAATTCGCCA CAGGCACCAGCGCGATTGCCCAGACTATGGCGGAATTGACGTCCAAGGGC GCTACTACTATTGTGGGTGGAGGGGATTCAGTGGCTGCTGTGGAGAAGGC AGGACTGGGGGAAAAGTTGTCGCATGTCTCGACGGGGGGTGGGGCCTCGT TGGAGATGCTGGAAGGGAAGGTGTTGCCGGGTGTGGCGGCGATCCAGGAT GCGAAGTGAAGGGGGGATCGGGAGGGAGGAAAGGAGGGAGGAACAAGGAG TTTGCTTTAGGTGGGATTGAGAATGAGTGTGTGGGGGGGCTATAGTAAGA GAACAAGGATTTCTGTTTGGAAGTCAAGGAATCTAGTATTTTGAGTTATG GAAGAGTTTGACGGAAAGTGTTGTGACTGAAAGGCGATCAGGGTAGAAAA CACGATCAAACGTGAAGAACTCGGACGAGATAATAAGAGCAGAAGAGAGG CGAGAGGAAGAGGGAAGTGGAAGATGATTGTGGTGGTATTTATGCCGTCA CAAGCGACAGACAGCAGAGAAAAAAGGGGCGGAAGAATGAAGTGACGACG ACACGCTTTGCCTGTATTTGCTTGGCCCGTTTCTCTCCCGTAGGCACTCA TTCGCCCACCCCGAAACGGTGTGTTTTGGGGAAGAG
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Coding sequence (CDS) from alignment at chr6:340635..343070+

>NO06G01060.2 ID=NO06G01060.2|Name=NO06G01060.2|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at chr6:340635..343070+ (Nannochloropsis oceanica)
ATGCGACGGTGCTGCACATGTGCAAATTTCACAATTGGACCAGTCACTAC
TTCAAGGACCAAGTATTTCCAGCTGCAGGCACCCCTTCTCATTGCGCACA
AAATCATTCACTCATTTTCCTCTCCCATCTCCGCTTCCCATCTTCTTACC
AATCTCCCAACCGAACAGGAAAAAGAGGCCCGCGTCATCCTCTGTAGTCA
CCTCGGCCGTCCAAAGGGCGTGACTGAATCCCTGCGCCTGGGTCCTGTCG
CTGCCCGCCTCTCCGAGCTCTTAGGCACAGACGTTGTGTACCTCAAAGAC
TGTGTGGGCGACGAAATCGAGTCGTCTGTCGCTGCCCTCACTCCGGGACA
AGTTGCCCTGTTGGAGAACGTGCGTTTCTATCCGGAGGAGGAGAAGAATG
CGCCGGACTTTGCTAAGAAGCTCGCGAGGCTTGCCGATGTGTATGTCAAT
GACGCGTTCGGGACGGCGCACCGTGCGCATGCGAGTACCGAGGGGGTTGC
CAAGCTCGTGAAGGCGACGTGTGCCGGTTTTTTGATGGAAAAGGAGTTGG
ACTATCTGGATGGGGCGGTCAAGAACCCGAAGAGACCTTTTGCAGCAATT
GTGGGGGGATCCAAGGTCTCGACCAAAATCACGGTGGTGGAGGCCCTCAT
CAACAAGGTTGACAAGCTCATCATCGGCGGGGGCATGGTCTTCACCTTCC
TCAAGGCCCAGGGCCACGGGGTCGGTTCATCCCTCGTGGAAGAGGATTTC
CTTGAGCTCGCAAAGAAATTGGAAATCATCGCCAAGGAGAAAGGAGTCAA
GCTCGTTCTTCCCACCGACGTGGTGATTGCTGATAAATTTTCTGCCGATG
CGGAAAGCAAAGTGGTGCCCGCGACTGAGATCCCCGACGGGTGGATGGGC
CTCGACAACGGCCCGGAGACGACCAAGATGATCCAGGCGGAGCTCGCGGA
CTGCAAGACCATCATCTGGAATGGTCCCATGGGCGTGTTTGAGTTCGACA
AATTCGCCACAGGCACCAGCGCGATTGCCCAGACTATGGCGGAATTGACG
TCCAAGGGCGCTACTACTATTGTGGGTGGAGGGGATTCAGTGGCTGCTGT
GGAGAAGGCAGGACTGGGGGAAAAGTTGTCGCATGTCTCGACGGGGGGTG
GGGCCTCGTTGGAGATGCTGGAAGGGAAGGTGTTGCCGGGTGTGGCGGCG
ATCCAGGATGCGAAGTGA
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Synonyms
Publications