NO06G01010.1, NO06G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01010.1
Unique NameNO06G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr6:327968..328933 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:327968..328933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01010.1 vs.
Match: EWM26119.1 (methyltransferase type 11 [Nannochloropsis gaditana])

HSP 1 Score: 361.3 bits (926), Expect = 3.100e-96
Identity = 183/288 (63.54%), Postives = 222/288 (77.08%), Query Frame = 0 
Query:   36 TSSLHLAAPAARHR-IHNVAAAGFENQAAMYEKTRPSYPFNSVEYVIELIRAQKLQ-GTSSPVLDLAAGGGKFTRLLARHPWLEVSAVEPVAAMRSVFKEMMPMIPCLEGTGDAIPFGDKHFDAVTVAQAFHWMSTLESLREIHRVLRPKGTLVLIWNMESRSAPWMGQLRDVYEQYDTHIPQYRHGEWKKVFALPEAQRLFPGPLTTRFFQQEMIVTKGMAWERVLSKSYIASLTRSEQALVRSRVDRVVEEHIAAFDLSVEDPVTGKIDRAARQPIDTEVTFIRAA 322
            TSS+    P    R IH+VAAAGF  QA  YE+TRPSYP  +V YV +LI   K   G S+ VLDLAAGGGKFT L+++     V AVEPV AMR VF++ +P IPCL GT D IP  ++ FDAVT+AQAFHWMSTL++LR+IHRVLRP G L L+WNMESRS PW+  LRD+YE+YDT+IPQYRHG+WK+VF LPEAQRLFPGPLTTRFFQQ+M+VTK  AWERVLSKSYIASLT  EQA+VRS+V+ ++ E+ +AF +   +PVT + + AA Q IDTEVT+IR A
Sbjct:   16 TSSVGFIIPRVCIREIHDVAAAGFRKQAEGYERTRPSYPAAAVNYVAKLIGLSKRDLGKSTNVLDLAAGGGKFTCLISKRRGFHVVAVEPVLAMREVFQQKLPEIPCLPGTADKIPCRNQSFDAVTIAQAFHWMSTLDALRDIHRVLRPGGLLALLWNMESRSVPWVASLRDIYEKYDTNIPQYRHGDWKEVFLLPEAQRLFPGPLTTRFFQQDMLVTKERAWERVLSKSYIASLTEMEQAVVRSQVEGILHENRSAFSIPTRNPVTSEKEFAAHQLIDTEVTYIREA 303
The following BLAST results are available for this feature:
BLAST of NO06G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26119.13.100e-9663.54methyltransferase type 11 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01010NO06G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01010.1NO06G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01010.1.cds1NO06G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01010.1 ID=NO06G01010.1|Name=NO06G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGCGTGCCAGGCCGCAACTATGCACGTTACGTGCTGCAGCTGTAGACGC
AGGTAATTCCTTCGCCGTCGCCCCGTGCCTGGTCTTTCCATCTTCTCATG
TTACGACCTCCTCGCTGCACCTTGCTGCTCCCGCTGCCCGTCACCGCATT
CACAATGTTGCGGCCGCGGGTTTTGAAAATCAGGCGGCGATGTACGAGAA
AACGCGACCGTCTTATCCTTTCAACTCCGTGGAGTACGTCATCGAGCTAA
TTCGAGCGCAGAAGCTCCAAGGCACATCATCCCCCGTGCTGGACTTGGCG
GCGGGAGGAGGGAAATTCACCCGTCTCTTGGCCAGACATCCCTGGCTAGA
GGTGAGTGCGGTGGAGCCCGTGGCGGCCATGCGCAGTGTGTTCAAAGAGA
TGATGCCTATGATTCCTTGCCTTGAAGGGACAGGTGATGCCATTCCTTTC
GGGGATAAGCATTTTGATGCTGTGACTGTCGCGCAGGCGTTTCATTGGAT
GAGCACTCTCGAATCCCTGCGAGAAATTCATCGGGTCCTCCGTCCGAAAG
GCACGTTGGTCCTAATTTGGAATATGGAAAGTCGGAGTGCACCGTGGATG
GGGCAATTAAGAGACGTGTATGAGCAGTATGATACACATATACCTCAGTA
CCGTCATGGGGAATGGAAAAAAGTCTTTGCCTTGCCCGAAGCCCAACGCT
TGTTTCCCGGCCCGCTGACTACTCGTTTTTTCCAGCAAGAAATGATAGTT
ACTAAGGGCATGGCATGGGAGAGGGTGTTGAGTAAGAGCTATATCGCGTC
ATTGACGAGATCGGAGCAGGCGCTCGTTCGGTCGCGGGTGGACCGAGTGG
TGGAGGAGCACATAGCTGCTTTTGATTTGTCTGTGGAGGATCCAGTGACA
GGTAAGATAGATAGGGCGGCTCGCCAACCGATTGATACTGAAGTGACTTT
CATTCGGGCGGCTTGA
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protein sequence of NO06G01010.1

>NO06G01010.1-protein ID=NO06G01010.1-protein|Name=NO06G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MRARPQLCTLRAAAVDAGNSFAVAPCLVFPSSHVTTSSLHLAAPAARHRI
HNVAAAGFENQAAMYEKTRPSYPFNSVEYVIELIRAQKLQGTSSPVLDLA
AGGGKFTRLLARHPWLEVSAVEPVAAMRSVFKEMMPMIPCLEGTGDAIPF
GDKHFDAVTVAQAFHWMSTLESLREIHRVLRPKGTLVLIWNMESRSAPWM
GQLRDVYEQYDTHIPQYRHGEWKKVFALPEAQRLFPGPLTTRFFQQEMIV
TKGMAWERVLSKSYIASLTRSEQALVRSRVDRVVEEHIAAFDLSVEDPVT
GKIDRAARQPIDTEVTFIRAA*
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mRNA from alignment at chr6:327968..328933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01010.1 ID=NO06G01010.1|Name=NO06G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at chr6:327968..328933+ (Nannochloropsis oceanica)
ATGCGTGCCAGGCCGCAACTATGCACGTTACGTGCTGCAGCTGTAGACGC
AGGTAATTCCTTCGCCGTCGCCCCGTGCCTGGTCTTTCCATCTTCTCATG
TTACGACCTCCTCGCTGCACCTTGCTGCTCCCGCTGCCCGTCACCGCATT
CACAATGTTGCGGCCGCGGGTTTTGAAAATCAGGCGGCGATGTACGAGAA
AACGCGACCGTCTTATCCTTTCAACTCCGTGGAGTACGTCATCGAGCTAA
TTCGAGCGCAGAAGCTCCAAGGCACATCATCCCCCGTGCTGGACTTGGCG
GCGGGAGGAGGGAAATTCACCCGTCTCTTGGCCAGACATCCCTGGCTAGA
GGTGAGTGCGGTGGAGCCCGTGGCGGCCATGCGCAGTGTGTTCAAAGAGA
TGATGCCTATGATTCCTTGCCTTGAAGGGACAGGTGATGCCATTCCTTTC
GGGGATAAGCATTTTGATGCTGTGACTGTCGCGCAGGCGTTTCATTGGAT
GAGCACTCTCGAATCCCTGCGAGAAATTCATCGGGTCCTCCGTCCGAAAG
GCACGTTGGTCCTAATTTGGAATATGGAAAGTCGGAGTGCACCGTGGATG
GGGCAATTAAGAGACGTGTATGAGCAGTATGATACACATATACCTCAGTA
CCGTCATGGGGAATGGAAAAAAGTCTTTGCCTTGCCCGAAGCCCAACGCT
TGTTTCCCGGCCCGCTGACTACTCGTTTTTTCCAGCAAGAAATGATAGTT
ACTAAGGGCATGGCATGGGAGAGGGTGTTGAGTAAGAGCTATATCGCGTC
ATTGACGAGATCGGAGCAGGCGCTCGTTCGGTCGCGGGTGGACCGAGTGG
TGGAGGAGCACATAGCTGCTTTTGATTTGTCTGTGGAGGATCCAGTGACA
GGTAAGATAGATAGGGCGGCTCGCCAACCGATTGATACTGAAGTGACTTT
CATTCGGGCGGCTTGA
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Coding sequence (CDS) from alignment at chr6:327968..328933+

>NO06G01010.1 ID=NO06G01010.1|Name=NO06G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr6:327968..328933+ (Nannochloropsis oceanica)
ATGCGTGCCAGGCCGCAACTATGCACGTTACGTGCTGCAGCTGTAGACGC
AGGTAATTCCTTCGCCGTCGCCCCGTGCCTGGTCTTTCCATCTTCTCATG
TTACGACCTCCTCGCTGCACCTTGCTGCTCCCGCTGCCCGTCACCGCATT
CACAATGTTGCGGCCGCGGGTTTTGAAAATCAGGCGGCGATGTACGAGAA
AACGCGACCGTCTTATCCTTTCAACTCCGTGGAGTACGTCATCGAGCTAA
TTCGAGCGCAGAAGCTCCAAGGCACATCATCCCCCGTGCTGGACTTGGCG
GCGGGAGGAGGGAAATTCACCCGTCTCTTGGCCAGACATCCCTGGCTAGA
GGTGAGTGCGGTGGAGCCCGTGGCGGCCATGCGCAGTGTGTTCAAAGAGA
TGATGCCTATGATTCCTTGCCTTGAAGGGACAGGTGATGCCATTCCTTTC
GGGGATAAGCATTTTGATGCTGTGACTGTCGCGCAGGCGTTTCATTGGAT
GAGCACTCTCGAATCCCTGCGAGAAATTCATCGGGTCCTCCGTCCGAAAG
GCACGTTGGTCCTAATTTGGAATATGGAAAGTCGGAGTGCACCGTGGATG
GGGCAATTAAGAGACGTGTATGAGCAGTATGATACACATATACCTCAGTA
CCGTCATGGGGAATGGAAAAAAGTCTTTGCCTTGCCCGAAGCCCAACGCT
TGTTTCCCGGCCCGCTGACTACTCGTTTTTTCCAGCAAGAAATGATAGTT
ACTAAGGGCATGGCATGGGAGAGGGTGTTGAGTAAGAGCTATATCGCGTC
ATTGACGAGATCGGAGCAGGCGCTCGTTCGGTCGCGGGTGGACCGAGTGG
TGGAGGAGCACATAGCTGCTTTTGATTTGTCTGTGGAGGATCCAGTGACA
GGTAAGATAGATAGGGCGGCTCGCCAACCGATTGATACTGAAGTGACTTT
CATTCGGGCGGCTTGA
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Synonyms
Publications