NO06G01000.1, NO06G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01000.1
Unique NameNO06G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1398
Alignment locationchr6:326319..327716 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:326319..327716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01000.1 vs.
Match: EWM26090.1 (elongator complex protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 447.2 bits (1149), Expect = 6.200e-122
Identity = 258/459 (56.21%), Postives = 328/459 (71.46%), Query Frame = 0 
Query:    3 SSSSSFRRLDRPVTTTMTGQGISIEHLSPSKIAPPPPKAPGTRPWINGNTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLGKYFVAQGVSGQQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSIPATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIG--KGHSSSSSSSSSYSSTFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDDNKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKTSAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVADTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTSNKWGVRRDRRKLYIEPLHLPPEGVRTLTEDVEEKKGGRKRNRGKVPGMMCATGGGGDGG 460
            +S SSFRR+DRPVTT++  Q     +   S I   PP+APGT+PWINGNTLISSGN+DLDSVLGGG+CLGT+TLVEEDRFSDHAL+L KYF+AQGVSG  +CLV+GAEGSKAAL++T+V QLPFDLTYK+N+Q +QE+E +     S P+++  + P    LSTF   L  +LP+   +     DPLSIAWQYRKYI         S+S++  SS+FC+SYDLSR +Q EVLAAA APP+++   D++++ +  Q+ +        ++ S VY +VAS ++SLP  TVLRV++KSFL KT AW +A  G  LLLLHSL++L R  P+ + VTL + H+ +RQ RL +RVADTVLEL SFA     G R     EFEAFAG L++K LQH+NALAP+RG SNK GV+RDRRKL+IEPLHLPPEGVRTLTEDVE +K GR+R   +          GGD G
Sbjct:   19 ASLSSFRRIDRPVTTSVPKQ-----YDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRP----LSTFSRELGDSLPS---VGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAA-APPVVV---DVSEEEEGQQEPS--------SACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARVADTVLELQSFA-----GHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRGRRRKEER----------GGDRG 438
The following BLAST results are available for this feature:
BLAST of NO06G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26090.16.200e-12256.21elongator complex protein 4 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01000NO06G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01000.1NO06G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01000.1.cds1NO06G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01000.1 ID=NO06G01000.1|Name=NO06G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp
ATGGCGTCGTCATCATCCTCCTTCCGTCGGCTGGACAGGCCCGTGACCAC
AACAATGACAGGGCAAGGGATAAGCATCGAGCATTTGTCTCCATCCAAAA
TCGCTCCGCCACCGCCTAAAGCCCCAGGCACCAGGCCTTGGATCAATGGC
AATACGCTCATCTCTTCGGGTAACAAGGACCTTGACAGCGTCTTGGGTGG
TGGCTTGTGTCTGGGCACGCTCACGCTGGTGGAGGAGGACCGATTTTCCG
ATCATGCCTTACTGCTGGGCAAATATTTTGTGGCGCAGGGCGTGAGTGGG
CAGCAGCGTTGCCTCGTGGTGGGCGCGGAGGGCAGCAAGGCTGCGCTTGA
GGAGACATATGTGGCCCAGCTCCCCTTTGACCTGACCTATAAGAGGAATG
AACAATCGAAACAGGAGCAAGAGCAAAAGAAGCCAGCGCTGAGCTCGATA
CCAGCTACATCGACGAGAAGTACACCACCACCGAGTGCCCTGTCAACATT
TCCTTCAGGGCTGCAACAAGCCCTTCCCACCCTTCCTTTTCTGTCAACCA
AAATAGAAGACCCTCTCAGCATCGCGTGGCAGTACCGAAAATATATAGGC
AAAGGCCATTCCTCCTCCTCTTCCTCCTCCTCCTCTTATTCTTCCACGTT
CTGTCACAGCTACGACTTGAGCCGGACAATGCAAACCGAAGTGCTAGCGG
CAGCCACCGCCCCACCCCTTCTCATAGACCTCGCCGACATCACCGACGAC
AACAAACACCTACAGCAAGGTAATGGAGGTAACGCACACACTAATGTCAA
TAGCTTGAGCCACGTCTACGACGCCGTCGCCTCCACCCTCCAATCCCTTC
CCCCTCGCACCGTCCTCCGCGTCCTTCTGAAATCCTTCCTCGCCAAAACC
AGTGCGTGGCCCACCGCTTCCCCTGGGCATGCTCTCCTCCTTCTCCACTC
TCTTCAACAGCTTGCCCGTGGACAGCCAATGGTCGTTCTAGTCACATTAC
CTTCTTGCCATCTCTCTCGAAGACAACTTCGCCTCTTCAGCCGCGTGGCG
GACACGGTCCTGGAGCTCTCCTCTTTTGCTGCACGAGGGAGGGAGGGAGG
GAGGGAGGGAGGACCTCGTGAGTTTGAGGCATTTGCAGGGTTGTTGTATG
TAAAGGGTTTGCAGCATATAAATGCATTGGCTCCTGTCCGAGGAACGTCG
AATAAATGGGGGGTGAGGAGGGATAGGAGAAAATTGTACATTGAACCGTT
GCACTTGCCCCCTGAAGGGGTGCGGACTCTGACAGAAGATGTGGAGGAGA
AGAAGGGTGGGAGAAAGAGGAACAGAGGGAAGGTGCCGGGGATGATGTGC
GCGACGGGTGGAGGGGGGGATGGAGGGGGGTCGTCCTTGGATTTTTGA
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protein sequence of NO06G01000.1

>NO06G01000.1-protein ID=NO06G01000.1-protein|Name=NO06G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp
MASSSSSFRRLDRPVTTTMTGQGISIEHLSPSKIAPPPPKAPGTRPWING
NTLISSGNKDLDSVLGGGLCLGTLTLVEEDRFSDHALLLGKYFVAQGVSG
QQRCLVVGAEGSKAALEETYVAQLPFDLTYKRNEQSKQEQEQKKPALSSI
PATSTRSTPPPSALSTFPSGLQQALPTLPFLSTKIEDPLSIAWQYRKYIG
KGHSSSSSSSSSYSSTFCHSYDLSRTMQTEVLAAATAPPLLIDLADITDD
NKHLQQGNGGNAHTNVNSLSHVYDAVASTLQSLPPRTVLRVLLKSFLAKT
SAWPTASPGHALLLLHSLQQLARGQPMVVLVTLPSCHLSRRQLRLFSRVA
DTVLELSSFAARGREGGREGGPREFEAFAGLLYVKGLQHINALAPVRGTS
NKWGVRRDRRKLYIEPLHLPPEGVRTLTEDVEEKKGGRKRNRGKVPGMMC
ATGGGGDGGGSSLDF*
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mRNA from alignment at chr6:326319..327716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01000.1 ID=NO06G01000.1|Name=NO06G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at chr6:326319..327716- (Nannochloropsis oceanica)
ATGGCGTCGTCATCATCCTCCTTCCGTCGGCTGGACAGGCCCGTGACCAC
AACAATGACAGGGCAAGGGATAAGCATCGAGCATTTGTCTCCATCCAAAA
TCGCTCCGCCACCGCCTAAAGCCCCAGGCACCAGGCCTTGGATCAATGGC
AATACGCTCATCTCTTCGGGTAACAAGGACCTTGACAGCGTCTTGGGTGG
TGGCTTGTGTCTGGGCACGCTCACGCTGGTGGAGGAGGACCGATTTTCCG
ATCATGCCTTACTGCTGGGCAAATATTTTGTGGCGCAGGGCGTGAGTGGG
CAGCAGCGTTGCCTCGTGGTGGGCGCGGAGGGCAGCAAGGCTGCGCTTGA
GGAGACATATGTGGCCCAGCTCCCCTTTGACCTGACCTATAAGAGGAATG
AACAATCGAAACAGGAGCAAGAGCAAAAGAAGCCAGCGCTGAGCTCGATA
CCAGCTACATCGACGAGAAGTACACCACCACCGAGTGCCCTGTCAACATT
TCCTTCAGGGCTGCAACAAGCCCTTCCCACCCTTCCTTTTCTGTCAACCA
AAATAGAAGACCCTCTCAGCATCGCGTGGCAGTACCGAAAATATATAGGC
AAAGGCCATTCCTCCTCCTCTTCCTCCTCCTCCTCTTATTCTTCCACGTT
CTGTCACAGCTACGACTTGAGCCGGACAATGCAAACCGAAGTGCTAGCGG
CAGCCACCGCCCCACCCCTTCTCATAGACCTCGCCGACATCACCGACGAC
AACAAACACCTACAGCAAGGTAATGGAGGTAACGCACACACTAATGTCAA
TAGCTTGAGCCACGTCTACGACGCCGTCGCCTCCACCCTCCAATCCCTTC
CCCCTCGCACCGTCCTCCGCGTCCTTCTGAAATCCTTCCTCGCCAAAACC
AGTGCGTGGCCCACCGCTTCCCCTGGGCATGCTCTCCTCCTTCTCCACTC
TCTTCAACAGCTTGCCCGTGGACAGCCAATGGTCGTTCTAGTCACATTAC
CTTCTTGCCATCTCTCTCGAAGACAACTTCGCCTCTTCAGCCGCGTGGCG
GACACGGTCCTGGAGCTCTCCTCTTTTGCTGCACGAGGGAGGGAGGGAGG
GAGGGAGGGAGGACCTCGTGAGTTTGAGGCATTTGCAGGGTTGTTGTATG
TAAAGGGTTTGCAGCATATAAATGCATTGGCTCCTGTCCGAGGAACGTCG
AATAAATGGGGGGTGAGGAGGGATAGGAGAAAATTGTACATTGAACCGTT
GCACTTGCCCCCTGAAGGGGTGCGGACTCTGACAGAAGATGTGGAGGAGA
AGAAGGGTGGGAGAAAGAGGAACAGAGGGAAGGTGCCGGGGATGATGTGC
GCGACGGGTGGAGGGGGGGATGGAGGGGGGTCGTCCTTGGATTTTTGA
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Coding sequence (CDS) from alignment at chr6:326319..327716-

>NO06G01000.1 ID=NO06G01000.1|Name=NO06G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr6:326319..327716- (Nannochloropsis oceanica)
ATGGCGTCGTCATCATCCTCCTTCCGTCGGCTGGACAGGCCCGTGACCAC
AACAATGACAGGGCAAGGGATAAGCATCGAGCATTTGTCTCCATCCAAAA
TCGCTCCGCCACCGCCTAAAGCCCCAGGCACCAGGCCTTGGATCAATGGC
AATACGCTCATCTCTTCGGGTAACAAGGACCTTGACAGCGTCTTGGGTGG
TGGCTTGTGTCTGGGCACGCTCACGCTGGTGGAGGAGGACCGATTTTCCG
ATCATGCCTTACTGCTGGGCAAATATTTTGTGGCGCAGGGCGTGAGTGGG
CAGCAGCGTTGCCTCGTGGTGGGCGCGGAGGGCAGCAAGGCTGCGCTTGA
GGAGACATATGTGGCCCAGCTCCCCTTTGACCTGACCTATAAGAGGAATG
AACAATCGAAACAGGAGCAAGAGCAAAAGAAGCCAGCGCTGAGCTCGATA
CCAGCTACATCGACGAGAAGTACACCACCACCGAGTGCCCTGTCAACATT
TCCTTCAGGGCTGCAACAAGCCCTTCCCACCCTTCCTTTTCTGTCAACCA
AAATAGAAGACCCTCTCAGCATCGCGTGGCAGTACCGAAAATATATAGGC
AAAGGCCATTCCTCCTCCTCTTCCTCCTCCTCCTCTTATTCTTCCACGTT
CTGTCACAGCTACGACTTGAGCCGGACAATGCAAACCGAAGTGCTAGCGG
CAGCCACCGCCCCACCCCTTCTCATAGACCTCGCCGACATCACCGACGAC
AACAAACACCTACAGCAAGGTAATGGAGGTAACGCACACACTAATGTCAA
TAGCTTGAGCCACGTCTACGACGCCGTCGCCTCCACCCTCCAATCCCTTC
CCCCTCGCACCGTCCTCCGCGTCCTTCTGAAATCCTTCCTCGCCAAAACC
AGTGCGTGGCCCACCGCTTCCCCTGGGCATGCTCTCCTCCTTCTCCACTC
TCTTCAACAGCTTGCCCGTGGACAGCCAATGGTCGTTCTAGTCACATTAC
CTTCTTGCCATCTCTCTCGAAGACAACTTCGCCTCTTCAGCCGCGTGGCG
GACACGGTCCTGGAGCTCTCCTCTTTTGCTGCACGAGGGAGGGAGGGAGG
GAGGGAGGGAGGACCTCGTGAGTTTGAGGCATTTGCAGGGTTGTTGTATG
TAAAGGGTTTGCAGCATATAAATGCATTGGCTCCTGTCCGAGGAACGTCG
AATAAATGGGGGGTGAGGAGGGATAGGAGAAAATTGTACATTGAACCGTT
GCACTTGCCCCCTGAAGGGGTGCGGACTCTGACAGAAGATGTGGAGGAGA
AGAAGGGTGGGAGAAAGAGGAACAGAGGGAAGGTGCCGGGGATGATGTGC
GCGACGGGTGGAGGGGGGGATGGAGGGGGGTCGTCCTTGGATTTTTGA
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Synonyms
Publications