NO06G00990.1, NO06G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00990.1
Unique NameNO06G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1644
Alignment locationchr6:324157..326064 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:324157..326064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00990.1 vs.
Match: EWM26083.1 (chaperone protein [Nannochloropsis gaditana])

HSP 1 Score: 433.3 bits (1113), Expect = 8.900e-118
Identity = 268/366 (73.22%), Postives = 295/366 (80.60%), Query Frame = 0 
Query:   76 ARPASAAQQRSRRSGMLAMKVKFDAKQDYYGRLNIDKTASLNDIKRAYRRLALQTHPDVNKAPDASETFKRVCEAYKVLSDAEARKGYDLARGMHGGGYSS---RWGSGAAGRGS-TSSSSSSRTWYDQYDPSGFGGRRPGANEDTRESIDDSFSSIFRDFVGGVASKGGRGVLEDVVEFLENSVDGFGEESNAEFEEILKSDDLTLVQEEIENLNFLIPKLREKQQQAKIDMMVAKGKLRTLQSAAAARDMAAVDKQLEAVERVAAMQARVQDLDGHMKRADKRQRRLMLRAEELRWGMGGRSAYSKYASPGAKGSASSRTNTAGSAGSAAAAAGGGGGGAGRSVAGGGGSGGKGGGGGGGVEEE 438
            ARP  AAQ    R G +AM+VKFD K+DYY RL+I+K+ASLNDIKRAYRRLALQTHPDVNKAPDA+ETFK+VCEAYKVLSDAEARKGYDLARGM G G+ S   RW +   GRG+ +SSSSSSR WYDQY P  FGG  PGANE+T ESIDDSFSSIFRDFVG V S GGRG LEDVV FLE++VDGF EES+AEFEEILK +DL LVQ+EIENLNFLIPKLREKQQQAKID+MVA+GKLRTLQ AAAARD+  VD+QLEAVE+VAA QARV+DL+GHMKRADKRQRRLMLRAEELRWG GGRSAYSKYASPG KGSASSR+NT    G      GG   G        G + G G  GGG  E E
Sbjct:   85 ARPRRAAQ----RVGAIAMRVKFDVKKDYYARLDIEKSASLNDIKRAYRRLALQTHPDVNKAPDAAETFKQVCEAYKVLSDAEARKGYDLARGMQGSGFGSGGRRW-TNVGGRGTASSSSSSSRGWYDQYGP--FGGGAPGANEETAESIDDSFSSIFRDFVGNVGSNGGRGFLEDVVSFLESNVDGFSEESDAEFEEILKGEDLQLVQDEIENLNFLIPKLREKQQQAKIDVMVAQGKLRTLQ-AAAARDLEGVDRQLEAVEKVAATQARVKDLEGHMKRADKRQRRLMLRAEELRWGAGGRSAYSKYASPGTKGSASSRSNT----GERGERVGGEMRGRPPPRRRRGRAPGTGERGGGAPEAE 438
The following BLAST results are available for this feature:
BLAST of NO06G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26083.18.900e-11873.22chaperone protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00990NO06G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00990.1NO06G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00990.1.cds1NO06G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00990.1.cds2NO06G00990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00990.1 ID=NO06G00990.1|Name=NO06G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
ACCAAAACCACTTCCATGCCCAGCAGCACCTTTTATCAGCTGAGATGCTG
CCCTCGAGACCAAAAAGAAATGCAGCCGGCCGCCGGCCTCCTCTGGCCAC
CTCACCCAGCCTGAACGTCGTGCTCGTCCTCCTCCTCATCTGCTACTCGT
CCTCCTGCTGTGAGGCGTTTGCCTTCTTCTGCGGCGACGGAAACAGCATC
AGAAGCCTAATGGACTTCACCCGGACGGCCAAGGCTCCGTCAACACGTAC
TTCAGACGTGGTTTGGGGTGCAAGACCAGCATCAGCAGCCCAGCAGCGCT
CGCGCCGGTCAGGCATGCTGGCCATGAAAGTAAAGTTTGACGCCAAGCAA
GATTATTATGGACGGCTGAATATAGATAAAACTGCGAGCTTGAATGACAT
AAAACGTGCCTACCGCCGCTTGGCGCTGCAAACCCATCCCGATGTCAACA
AGGCACCTGATGCATCCGAGACATTCAAGCGGGTCTGCGAAGCCTACAAA
GTCCTCTCAGACGCCGAGGCCCGCAAAGGCTACGATTTGGCTAGAGGCAT
GCATGGAGGAGGATACAGCAGCCGCTGGGGTAGTGGTGCGGCCGGTCGTG
GCAGCACGTCGTCTTCGTCTTCGTCACGGACATGGTACGATCAATACGAT
CCTAGTGGGTTTGGTGGTCGTCGGCCGGGAGCGAACGAAGACACACGGGA
GAGCATCGATGATAGTTTCAGTAGCATTTTTCGAGATTTTGTGGGTGGGG
TGGCGAGCAAGGGAGGACGGGGCGTGTTGGAGGATGTCGTGGAGTTTTTG
GAGAACAGCGTGGATGGGTTCGGGGAGGAGAGCAATGCCGAGTTTGAGGA
GATCTTGAAGAGCGATGATTTGACGTTGGTGCAAGAAGAAATTGAAAATT
TGAATTTTCTGATTCCCAAACTGAGAGAGAAGCAGCAGCAGGCGAAAATA
GACATGATGGTCGCTAAAGGGAAGCTTCGCACCCTCCAATCAGCAGCAGC
CGCAAGAGATATGGCTGCTGTGGACAAGCAACTCGAAGCCGTTGAACGCG
TGGCCGCGATGCAGGCACGGGTGCAAGACCTGGACGGCCACATGAAACGT
GCGGATAAACGGCAGAGGCGTTTGATGCTCAGGGCGGAGGAGTTGAGGTG
GGGAATGGGAGGGAGGTCTGCTTATTCGAAGTATGCTTCTCCGGGAGCGA
AAGGGAGTGCGAGCTCTAGAACAAATACTGCTGGCTCTGCTGGTTCTGCT
GCTGCTGCTGCTGGTGGTGGTGGAGGAGGAGCGGGAAGGTCTGTGGCAGG
AGGAGGAGGAAGCGGCGGAAAAGGCGGAGGAGGAGGGGGAGGGGTGGAGG
AGGAGTTGCAGAAATTGAAAAAGCAGATGGGGCTATAGCGCCATTGCTGC
TGCTGCTGCTCTTATGGAGGGTAGATAGGGTAAAGTGCAGGGGCAACGAG
GAGAAACTTCAGTGCCTTTCCTTTGTTTGGGAAGTACCAGCGCCTGTGTA
ATTGTGCATGTGTGCGTGCGTGTTTTTCTCTCTGTGTGTGTATACAGGAC
ATAAGTGGGCAAAGAGAGGAAATTGAAGAAAAATGTAAAAAAAGAGAGCC
ACATACGATATCACTCCATCTGACTGAGCAATAAATTGACGGGA
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protein sequence of NO06G00990.1

>NO06G00990.1-protein ID=NO06G00990.1-protein|Name=NO06G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MLPSRPKRNAAGRRPPLATSPSLNVVLVLLLICYSSSCCEAFAFFCGDGN
SIRSLMDFTRTAKAPSTRTSDVVWGARPASAAQQRSRRSGMLAMKVKFDA
KQDYYGRLNIDKTASLNDIKRAYRRLALQTHPDVNKAPDASETFKRVCEA
YKVLSDAEARKGYDLARGMHGGGYSSRWGSGAAGRGSTSSSSSSRTWYDQ
YDPSGFGGRRPGANEDTRESIDDSFSSIFRDFVGGVASKGGRGVLEDVVE
FLENSVDGFGEESNAEFEEILKSDDLTLVQEEIENLNFLIPKLREKQQQA
KIDMMVAKGKLRTLQSAAAARDMAAVDKQLEAVERVAAMQARVQDLDGHM
KRADKRQRRLMLRAEELRWGMGGRSAYSKYASPGAKGSASSRTNTAGSAG
SAAAAAGGGGGGAGRSVAGGGGSGGKGGGGGGGVEEELQKLKKQMGL*
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mRNA from alignment at chr6:324157..326064+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00990.1 ID=NO06G00990.1|Name=NO06G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at chr6:324157..326064+ (Nannochloropsis oceanica)
ACCAAAACCACTTCCATGCCCAGCAGCACCTTTTATCAGCTGAGATGCTG
CCCTCGAGACCAAAAAGAAATGCAGCCGGCCGCCGGCCTCCTCTGGCCAC
CTCACCCAGCCTGAACGTCGTGCTCGTCCTCCTCCTCATCTGCTACTCGT
CCTCCTGCTGTGAGGCGTTTGCCTTCTTCTGCGGCGACGGAAACAGCATC
AGAAGCCTAATGGACTTCACCCGGACGGCCAAGGCTCCGTCAACACGTAC
TTCAGACGTGGTTTGGGGTGCAAGACCAGCATCAGCAGCCCAGCAGCGCT
CGCGCCGGTCAGGCATGCTGGCCATGAAAGTAAAGTTTGACGCCAAGCAA
GATTATTATGGACGGCTGAATATAGATAAAACTGCGAGCTTGAATGACAT
AAAACGTGCCTACCGCCGCTTGGCGCTGCAAACCCATCCCGATGTCAACA
AGGCACCTGATGCATCCGAGACATTCAAGCGGGTCTGCGAAGCCTACAAA
GTCCTCTCAGACGCCGAGGCCCGCAAAGGCTACGATTTGGCTAGAGGCAT
GCATGGAGGAGGATACAGCAGCCGCTGGGGTAGTGGTGCGGCCGGTCGTG
GCAGCACGTCGTCTTCGTCTTCGTCACGGACATGGTACGATCAATACGAT
CCTAGTGGGTTTGGTGGTCGTCGGCCGGGAGCGAACGAAGACACACGGGA
GAGCATCGATGATAGTTTCAGTAGCATTTTTCGAGATTTTGTGGGTGGGG
TGGCGAGCAAGGGAGGACGGGGCGTGTTGGAGGATGTCGTGGAGTTTTTG
GAGAACAGCGTGGATGGGTTCGGGGAGGAGAGCAATGCCGAGTTTGAGGA
GATCTTGAAGAGCGATGATTTGACGTTGGTAAGTAGATAATAATACATTT
GCCCCCCTTTTCTTCTCCTCTATCCTATCTATGCACACGTACCCAGGCGT
TGTCATCCTCCTCCTTACCCTCCTTCCCTTTCTTCCTCTACGGGCCCAAC
AGAGATGAAGAATCCCTGAGCCGCGCTAAAGAGAACAAGAAGGCTCCAGG
GACCTTATGGTCGCCCAAGCCTCCCACAAACTCGTCCCTCATCTTTTCCT
CCTTCCCACCTTCCCCCTCCTCCCCTTCTCCCTCCTCCTCAGGTGCAAGA
AGAAATTGAAAATTTGAATTTTCTGATTCCCAAACTGAGAGAGAAGCAGC
AGCAGGCGAAAATAGACATGATGGTCGCTAAAGGGAAGCTTCGCACCCTC
CAATCAGCAGCAGCCGCAAGAGATATGGCTGCTGTGGACAAGCAACTCGA
AGCCGTTGAACGCGTGGCCGCGATGCAGGCACGGGTGCAAGACCTGGACG
GCCACATGAAACGTGCGGATAAACGGCAGAGGCGTTTGATGCTCAGGGCG
GAGGAGTTGAGGTGGGGAATGGGAGGGAGGTCTGCTTATTCGAAGTATGC
TTCTCCGGGAGCGAAAGGGAGTGCGAGCTCTAGAACAAATACTGCTGGCT
CTGCTGGTTCTGCTGCTGCTGCTGCTGGTGGTGGTGGAGGAGGAGCGGGA
AGGTCTGTGGCAGGAGGAGGAGGAAGCGGCGGAAAAGGCGGAGGAGGAGG
GGGAGGGGTGGAGGAGGAGTTGCAGAAATTGAAAAAGCAGATGGGGCTAT
AGCGCCATTGCTGCTGCTGCTGCTCTTATGGAGGGTAGATAGGGTAAAGT
GCAGGGGCAACGAGGAGAAACTTCAGTGCCTTTCCTTTGTTTGGGAAGTA
CCAGCGCCTGTGTAATTGTGCATGTGTGCGTGCGTGTTTTTCTCTCTGTG
TGTGTATACAGGACATAAGTGGGCAAAGAGAGGAAATTGAAGAAAAATGT
AAAAAAAGAGAGCCACATACGATATCACTCCATCTGACTGAGCAATAAAT
TGACGGGA
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Coding sequence (CDS) from alignment at chr6:324157..326064+

>NO06G00990.1 ID=NO06G00990.1|Name=NO06G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at chr6:324157..326064+ (Nannochloropsis oceanica)
ATGCTGCCCTCGAGACCAAAAAGAAATGCAGCCGGCCGCCGGCCTCCTCT
GGCCACCTCACCCAGCCTGAACGTCGTGCTCGTCCTCCTCCTCATCTGCT
ACTCGTCCTCCTGCTGTGAGGCGTTTGCCTTCTTCTGCGGCGACGGAAAC
AGCATCAGAAGCCTAATGGACTTCACCCGGACGGCCAAGGCTCCGTCAAC
ACGTACTTCAGACGTGGTTTGGGGTGCAAGACCAGCATCAGCAGCCCAGC
AGCGCTCGCGCCGGTCAGGCATGCTGGCCATGAAAGTAAAGTTTGACGCC
AAGCAAGATTATTATGGACGGCTGAATATAGATAAAACTGCGAGCTTGAA
TGACATAAAACGTGCCTACCGCCGCTTGGCGCTGCAAACCCATCCCGATG
TCAACAAGGCACCTGATGCATCCGAGACATTCAAGCGGGTCTGCGAAGCC
TACAAAGTCCTCTCAGACGCCGAGGCCCGCAAAGGCTACGATTTGGCTAG
AGGCATGCATGGAGGAGGATACAGCAGCCGCTGGGGTAGTGGTGCGGCCG
GTCGTGGCAGCACGTCGTCTTCGTCTTCGTCACGGACATGGTACGATCAA
TACGATCCTAGTGGGTTTGGTGGTCGTCGGCCGGGAGCGAACGAAGACAC
ACGGGAGAGCATCGATGATAGTTTCAGTAGCATTTTTCGAGATTTTGTGG
GTGGGGTGGCGAGCAAGGGAGGACGGGGCGTGTTGGAGGATGTCGTGGAG
TTTTTGGAGAACAGCGTGGATGGGTTCGGGGAGGAGAGCAATGCCGAGTT
TGAGGAGATCTTGAAGAGCGATGATTTGACGTTGGTGCAAGAAGAAATTG
AAAATTTGAATTTTCTGATTCCCAAACTGAGAGAGAAGCAGCAGCAGGCG
AAAATAGACATGATGGTCGCTAAAGGGAAGCTTCGCACCCTCCAATCAGC
AGCAGCCGCAAGAGATATGGCTGCTGTGGACAAGCAACTCGAAGCCGTTG
AACGCGTGGCCGCGATGCAGGCACGGGTGCAAGACCTGGACGGCCACATG
AAACGTGCGGATAAACGGCAGAGGCGTTTGATGCTCAGGGCGGAGGAGTT
GAGGTGGGGAATGGGAGGGAGGTCTGCTTATTCGAAGTATGCTTCTCCGG
GAGCGAAAGGGAGTGCGAGCTCTAGAACAAATACTGCTGGCTCTGCTGGT
TCTGCTGCTGCTGCTGCTGGTGGTGGTGGAGGAGGAGCGGGAAGGTCTGT
GGCAGGAGGAGGAGGAAGCGGCGGAAAAGGCGGAGGAGGAGGGGGAGGGG
TGGAGGAGGAGTTGCAGAAATTGAAAAAGCAGATGGGGCTATAG
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Synonyms
Publications