NO06G00960.1, NO06G00960.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G00960.1
Unique Name	NO06G00960.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2249
Alignment location	chr6:318015..320263 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:318015..320263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G00960.1 vs.
Match: EWM26145.1 (sumo ligase [Nannochloropsis gaditana])

HSP 1 Score: 439.9 bits (1130), Expect = 1.500e-119
Identity = 263/533 (49.34%), Postives = 346/533 (64.92%), Query Frame = 0

Query:    2 LGRTPTGFGAVGGG-VSKGSNVLIQCVCGQNARTGDEVVCSECNKVFHNQCYGISMRSRNKLYPARCFLCLSLKQNPFYEVIETIVNPTRISRRSKVESTVAVKVSMQTQTEVNLSRRAGPQKAGILSILVRCFPLNLLEMVKPKPGQELIDQQHKPPYYPTHCWPLESQLLVNNLPVAIKQRQVYFCGVQRKWKGQSEPVDIYNFCRSGINRLTLVHNDPDKHFVLLVQVVRSVSVEQLQQRVISSPDTPSAAESLERICQSFKACSIDSDGEGETPMATVTRLSLRCPLGLTHIQTPARGKECQHLQCFDLGTFLRYNERGSAAGWKCGVCHAGLTVEGLQVDAFMRDILEELKERRDGGEGEELDSIQINDKGEWKLFNSSKAAEERANNRKRKAEVATEAEGGGERGGGRGEEGRRGGGGGGAVSVDVDDDGVAVLTEAGSRRSSAGGGEGGSGSGGQQQNEGEGG------WEGQRGGEGRGGGGRPVGASVAIDLTVSSDEEPEDNGKGNMDEEEDEEGLVKSSRKR 528
            LGR   G G        K +   +QCVCGQ     DEV C+EC+  FH+QCYG SMR+RNK + A CFLCLS +QNPF EV+ET+V P+R++ R+++E+    K+S Q Q ++  SR+ G +  G L +LVRCFPLNLLE  +P PG +    + K P+YPTHCWPLESQL VN   V IKQRQ YF G QRK KG SEPVD++   R+GINR+ L+HND  K FV++VQ+V+ V V++L ++V+ SPDTP+A ESLERI QSF+ CS+DSD E    MATVTRLSLRCPLG+T I+ PARG +C HLQCFDL TFLRYNERG+AAGW+CGVC+  LT+EGL+VDAFMR+IL +++ R++    E+LDSI+IN +GEW+LFNSS      A++RKRKAE           G   GEE  +    G  V  +V DD    L++   +       E G     +QQ+  +G        + Q+  + RG   R     VAIDLT+SSD+  +  G  N  EE+D   ++ +  +R
Sbjct:  165 LGRQQGGPGGPHSAPAGKLAGTFVQCVCGQAVTPWDEVKCAECHIAFHDQCYGTSMRARNKTFSAACFLCLSRRQNPFLEVVETLVPPSRVTSRARMETNFQFKLSHQQQRDMLASRQGGSRNEGSLQLLVRCFPLNLLETARPSPGHD----EGKLPFYPTHCWPLESQLRVNTECVPIKQRQTYFYGSQRKSKGHSEPVDVFLLARTGINRVGLMHNDEGKGFVIMVQIVKVVGVQRLLRKVVESPDTPTAEESLERIRQSFRGCSVDSDTEDGELMATVTRLSLRCPLGMTPIRIPARGTDCHHLQCFDLDTFLRYNERGAAAGWRCGVCNTVLTLEGLRVDAFMRNILAQIEARKE--MNEDLDSIEINHQGEWELFNSS-----AASSRKRKAE-----------GNVAGEEEGKAVSDGKVVDPEVADDDDVALSDLCKQ---VARKENGQLPRQEQQHVPQGHHTQQEVLQQQKQAQQRGAALRD---PVAIDLTLSSDD--DGGGVWNESEEDDWRSVLDTISRR 667

The following BLAST results are available for this feature:

BLAST of NO06G00960.1 vs.

BLAST of NO06G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26145.1	1.500e-119	49.34	sumo ligase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G00960	NO06G00960	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00960.1	NO06G00960.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00960.1.cds1	NO06G00960.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:318015..320263-
coding sequence from alignment at chr6:318015..320263-

mRNA sequence

>NO06G00960.1 ID=NO06G00960.1|Name=NO06G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp
ATGCTGGGTCGGACCCCAACAGGGTTTGGTGCTGTTGGTGGAGGAGTATC
AAAAGGATCGAATGTGCTGATTCAGTGCGTGTGCGGGCAGAATGCAAGGA
CTGGGGATGAGGTGGTGTGTTCGGAGTGTAATAAAGTCTTCCACAACCAA
TGTTATGGCATCTCCATGCGATCCCGTAACAAGCTCTACCCCGCCCGGTG
CTTCCTCTGCCTCTCCTTAAAGCAAAATCCTTTCTACGAAGTAATCGAGA
CTATCGTCAACCCCACCCGCATCTCCAGGCGGTCCAAGGTCGAATCCACG
GTGGCCGTCAAAGTCAGCATGCAAACCCAAACCGAGGTCAACCTCTCTCG
CCGCGCCGGCCCCCAAAAAGCAGGCATCCTCTCCATCCTCGTCCGCTGCT
TTCCCCTCAACCTCTTGGAAATGGTCAAGCCGAAGCCCGGGCAAGAGCTC
ATAGACCAGCAGCATAAACCTCCCTACTACCCCACTCATTGCTGGCCCCT
TGAGTCTCAGCTCTTGGTTAACAACTTGCCGGTAGCGATAAAGCAACGAC
AGGTCTATTTCTGTGGTGTGCAACGGAAATGGAAGGGGCAGTCCGAGCCC
GTGGACATCTACAATTTCTGTCGCTCGGGAATTAATCGTCTTACCCTTGT
CCACAACGACCCCGACAAGCACTTCGTCCTCCTCGTTCAGGTTGTTCGAT
CTGTCTCAGTCGAGCAGCTGCAGCAGCGCGTGATCTCCTCCCCTGATACT
CCCAGTGCGGCTGAAAGTCTTGAGAGAATCTGCCAGTCTTTCAAGGCATG
CTCGATCGATTCAGATGGTGAGGGTGAGACGCCCATGGCCACGGTGACGC
GGCTTTCTCTCCGTTGTCCGCTGGGCCTGACGCATATCCAAACCCCGGCC
CGAGGGAAGGAGTGTCAGCACTTGCAGTGTTTTGATTTGGGGACTTTCTT
GAGATATAATGAACGGGGTTCAGCGGCGGGATGGAAGTGTGGGGTATGTC
ACGCAGGGTTAACCGTGGAGGGGTTGCAGGTCGATGCATTTATGAGGGAC
ATTCTTGAGGAGCTGAAGGAGCGGAGGGATGGGGGGGAGGGGGAGGAGTT
GGACTCGATTCAAATAAATGATAAAGGGGAATGGAAGCTGTTTAATTCGA
GTAAGGCCGCAGAGGAACGCGCAAACAACCGAAAGAGGAAGGCGGAGGTT
GCAACGGAGGCTGAGGGGGGGGGAGAAAGAGGAGGAGGACGAGGAGAAGA
AGGGAGAAGAGGGGGAGGAGGAGGAGGGGCGGTGAGTGTGGATGTTGATG
ATGATGGTGTGGCAGTCTTGACAGAGGCGGGTTCGAGGAGGTCTTCGGCG
GGAGGGGGAGAGGGTGGAAGTGGAAGTGGGGGCCAGCAGCAGAACGAGGG
GGAGGGAGGGTGGGAAGGACAAAGAGGAGGGGAAGGAAGGGGAGGAGGAG
GGCGGCCAGTGGGGGCGTCGGTTGCGATTGACCTTACTGTGAGCAGTGAC
GAGGAGCCTGAGGACAACGGAAAGGGAAACATGGACGAGGAAGAGGACGA
GGAAGGGTTGGTGAAGAGTAGCCGAAAGCGCCGCGGGCGGTTTATCGAAG
ACGACGAGTCAGAGGATGAGGACGAGAACGAGGCTGAGGGACGGGGTGAG
AAGCACCACGCGGGCACCGTCGAAGGGATGCGACATCATCCCGCCATTTG
TGCTGCTGCTACCACCACTGCCCTTGGGAATGCTGATTCTGCGACCGCCC
GGCGCCTTCCCCTCGCACCCGCTTCCGCGCTCGCATCAGTCCCTGCACCC
TTTGCGGCTCCTACGGCCGAGCCGGCAGAGCCAACAGCGCCTGCATCCAT
CCATACCCATGCCGCAGCGTTATCCCCTACTCCCTCAGCAGCAGGAACAG
GAACAGCAATACTCCCCAGGTCTGTGCAAGCAGTAGCACCAGCAGCACAA
GCAGCAGCAGTGGCGATATCAGAGCCCGCAGGCTCTGGAGGAGAGGCGCT
GTCGATGTCAAATGAACTAACTCTTCCCAATGACATAAATGACCTGTGGG
CATGAATGAGGGAAGAAAGCGGAGAAGGAGGAGACTTCCAAGTGAAAATT
GTTCGTCCCACGGACGTATTGACAAGTGGGCAGAGGGGGGGAAAGGGAGC
AAAGAGAATAGAAGAATGTACATAAACACAAGTAGTAGTAGCAGAGGGGG
GGAAAGGGAGCAAAGAGAATAGAAGAATGTACATAAACACAAGTAGTAG

protein sequence of NO06G00960.1

>NO06G00960.1-protein ID=NO06G00960.1-protein|Name=NO06G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=685bp
MLGRTPTGFGAVGGGVSKGSNVLIQCVCGQNARTGDEVVCSECNKVFHNQ
CYGISMRSRNKLYPARCFLCLSLKQNPFYEVIETIVNPTRISRRSKVEST
VAVKVSMQTQTEVNLSRRAGPQKAGILSILVRCFPLNLLEMVKPKPGQEL
IDQQHKPPYYPTHCWPLESQLLVNNLPVAIKQRQVYFCGVQRKWKGQSEP
VDIYNFCRSGINRLTLVHNDPDKHFVLLVQVVRSVSVEQLQQRVISSPDT
PSAAESLERICQSFKACSIDSDGEGETPMATVTRLSLRCPLGLTHIQTPA
RGKECQHLQCFDLGTFLRYNERGSAAGWKCGVCHAGLTVEGLQVDAFMRD
ILEELKERRDGGEGEELDSIQINDKGEWKLFNSSKAAEERANNRKRKAEV
ATEAEGGGERGGGRGEEGRRGGGGGGAVSVDVDDDGVAVLTEAGSRRSSA
GGGEGGSGSGGQQQNEGEGGWEGQRGGEGRGGGGRPVGASVAIDLTVSSD
EEPEDNGKGNMDEEEDEEGLVKSSRKRRGRFIEDDESEDEDENEAEGRGE
KHHAGTVEGMRHHPAICAAATTTALGNADSATARRLPLAPASALASVPAP
FAAPTAEPAEPTAPASIHTHAAALSPTPSAAGTGTAILPRSVQAVAPAAQ
AAAVAISEPAGSGGEALSMSNELTLPNDINDLWA*

mRNA from alignment at chr6:318015..320263-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G00960.1 ID=NO06G00960.1|Name=NO06G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at chr6:318015..320263- (Nannochloropsis oceanica)
ATGCTGGGTCGGACCCCAACAGGGTTTGGTGCTGTTGGTGGAGGAGTATC
AAAAGGATCGAATGTGCTGATTCAGTGCGTGTGCGGGCAGAATGCAAGGA
CTGGGGATGAGGTGGTGTGTTCGGAGTGTAATAAAGTCTTCCACAACCAA
TGTTATGGCATCTCCATGCGATCCCGTAACAAGCTCTACCCCGCCCGGTG
CTTCCTCTGCCTCTCCTTAAAGCAAAATCCTTTCTACGAAGTAATCGAGA
CTATCGTCAACCCCACCCGCATCTCCAGGCGGTCCAAGGTCGAATCCACG
GTGGCCGTCAAAGTCAGCATGCAAACCCAAACCGAGGTCAACCTCTCTCG
CCGCGCCGGCCCCCAAAAAGCAGGCATCCTCTCCATCCTCGTCCGCTGCT
TTCCCCTCAACCTCTTGGAAATGGTCAAGCCGAAGCCCGGGCAAGAGCTC
ATAGACCAGCAGCATAAACCTCCCTACTACCCCACTCATTGCTGGCCCCT
TGAGTCTCAGCTCTTGGTTAACAACTTGCCGGTAGCGATAAAGCAACGAC
AGGTCTATTTCTGTGGTGTGCAACGGAAATGGAAGGGGCAGTCCGAGCCC
GTGGACATCTACAATTTCTGTCGCTCGGGAATTAATCGTCTTACCCTTGT
CCACAACGACCCCGACAAGCACTTCGTCCTCCTCGTTCAGGTTGTTCGAT
CTGTCTCAGTCGAGCAGCTGCAGCAGCGCGTGATCTCCTCCCCTGATACT
CCCAGTGCGGCTGAAAGTCTTGAGAGAATCTGCCAGTCTTTCAAGGCATG
CTCGATCGATTCAGATGGTGAGGGTGAGACGCCCATGGCCACGGTGACGC
GGCTTTCTCTCCGTTGTCCGCTGGGCCTGACGCATATCCAAACCCCGGCC
CGAGGGAAGGAGTGTCAGCACTTGCAGTGTTTTGATTTGGGGACTTTCTT
GAGATATAATGAACGGGGTTCAGCGGCGGGATGGAAGTGTGGGGTATGTC
ACGCAGGGTTAACCGTGGAGGGGTTGCAGGTCGATGCATTTATGAGGGAC
ATTCTTGAGGAGCTGAAGGAGCGGAGGGATGGGGGGGAGGGGGAGGAGTT
GGACTCGATTCAAATAAATGATAAAGGGGAATGGAAGCTGTTTAATTCGA
GTAAGGCCGCAGAGGAACGCGCAAACAACCGAAAGAGGAAGGCGGAGGTT
GCAACGGAGGCTGAGGGGGGGGGAGAAAGAGGAGGAGGACGAGGAGAAGA
AGGGAGAAGAGGGGGAGGAGGAGGAGGGGCGGTGAGTGTGGATGTTGATG
ATGATGGTGTGGCAGTCTTGACAGAGGCGGGTTCGAGGAGGTCTTCGGCG
GGAGGGGGAGAGGGTGGAAGTGGAAGTGGGGGCCAGCAGCAGAACGAGGG
GGAGGGAGGGTGGGAAGGACAAAGAGGAGGGGAAGGAAGGGGAGGAGGAG
GGCGGCCAGTGGGGGCGTCGGTTGCGATTGACCTTACTGTGAGCAGTGAC
GAGGAGCCTGAGGACAACGGAAAGGGAAACATGGACGAGGAAGAGGACGA
GGAAGGGTTGGTGAAGAGTAGCCGAAAGCGCCGCGGGCGGTTTATCGAAG
ACGACGAGTCAGAGGATGAGGACGAGAACGAGGCTGAGGGACGGGGTGAG
AAGCACCACGCGGGCACCGTCGAAGGGATGCGACATCATCCCGCCATTTG
TGCTGCTGCTACCACCACTGCCCTTGGGAATGCTGATTCTGCGACCGCCC
GGCGCCTTCCCCTCGCACCCGCTTCCGCGCTCGCATCAGTCCCTGCACCC
TTTGCGGCTCCTACGGCCGAGCCGGCAGAGCCAACAGCGCCTGCATCCAT
CCATACCCATGCCGCAGCGTTATCCCCTACTCCCTCAGCAGCAGGAACAG
GAACAGCAATACTCCCCAGGTCTGTGCAAGCAGTAGCACCAGCAGCACAA
GCAGCAGCAGTGGCGATATCAGAGCCCGCAGGCTCTGGAGGAGAGGCGCT
GTCGATGTCAAATGAACTAACTCTTCCCAATGACATAAATGACCTGTGGG
CATGAATGAGGGAAGAAAGCGGAGAAGGAGGAGACTTCCAAGTGAAAATT
GTTCGTCCCACGGACGTATTGACAAGTGGGCAGAGGGGGGGAAAGGGAGC
AAAGAGAATAGAAGAATGTACATAAACACAAGTAGTAGTAGCAGAGGGGG
GGAAAGGGAGCAAAGAGAATAGAAGAATGTACATAAACACAAGTAGTAG

Coding sequence (CDS) from alignment at chr6:318015..320263-

>NO06G00960.1 ID=NO06G00960.1|Name=NO06G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=2055bp|location=Sequence derived from alignment at chr6:318015..320263- (Nannochloropsis oceanica)
ATGCTGGGTCGGACCCCAACAGGGTTTGGTGCTGTTGGTGGAGGAGTATC
AAAAGGATCGAATGTGCTGATTCAGTGCGTGTGCGGGCAGAATGCAAGGA
CTGGGGATGAGGTGGTGTGTTCGGAGTGTAATAAAGTCTTCCACAACCAA
TGTTATGGCATCTCCATGCGATCCCGTAACAAGCTCTACCCCGCCCGGTG
CTTCCTCTGCCTCTCCTTAAAGCAAAATCCTTTCTACGAAGTAATCGAGA
CTATCGTCAACCCCACCCGCATCTCCAGGCGGTCCAAGGTCGAATCCACG
GTGGCCGTCAAAGTCAGCATGCAAACCCAAACCGAGGTCAACCTCTCTCG
CCGCGCCGGCCCCCAAAAAGCAGGCATCCTCTCCATCCTCGTCCGCTGCT
TTCCCCTCAACCTCTTGGAAATGGTCAAGCCGAAGCCCGGGCAAGAGCTC
ATAGACCAGCAGCATAAACCTCCCTACTACCCCACTCATTGCTGGCCCCT
TGAGTCTCAGCTCTTGGTTAACAACTTGCCGGTAGCGATAAAGCAACGAC
AGGTCTATTTCTGTGGTGTGCAACGGAAATGGAAGGGGCAGTCCGAGCCC
GTGGACATCTACAATTTCTGTCGCTCGGGAATTAATCGTCTTACCCTTGT
CCACAACGACCCCGACAAGCACTTCGTCCTCCTCGTTCAGGTTGTTCGAT
CTGTCTCAGTCGAGCAGCTGCAGCAGCGCGTGATCTCCTCCCCTGATACT
CCCAGTGCGGCTGAAAGTCTTGAGAGAATCTGCCAGTCTTTCAAGGCATG
CTCGATCGATTCAGATGGTGAGGGTGAGACGCCCATGGCCACGGTGACGC
GGCTTTCTCTCCGTTGTCCGCTGGGCCTGACGCATATCCAAACCCCGGCC
CGAGGGAAGGAGTGTCAGCACTTGCAGTGTTTTGATTTGGGGACTTTCTT
GAGATATAATGAACGGGGTTCAGCGGCGGGATGGAAGTGTGGGGTATGTC
ACGCAGGGTTAACCGTGGAGGGGTTGCAGGTCGATGCATTTATGAGGGAC
ATTCTTGAGGAGCTGAAGGAGCGGAGGGATGGGGGGGAGGGGGAGGAGTT
GGACTCGATTCAAATAAATGATAAAGGGGAATGGAAGCTGTTTAATTCGA
GTAAGGCCGCAGAGGAACGCGCAAACAACCGAAAGAGGAAGGCGGAGGTT
GCAACGGAGGCTGAGGGGGGGGGAGAAAGAGGAGGAGGACGAGGAGAAGA
AGGGAGAAGAGGGGGAGGAGGAGGAGGGGCGGTGAGTGTGGATGTTGATG
ATGATGGTGTGGCAGTCTTGACAGAGGCGGGTTCGAGGAGGTCTTCGGCG
GGAGGGGGAGAGGGTGGAAGTGGAAGTGGGGGCCAGCAGCAGAACGAGGG
GGAGGGAGGGTGGGAAGGACAAAGAGGAGGGGAAGGAAGGGGAGGAGGAG
GGCGGCCAGTGGGGGCGTCGGTTGCGATTGACCTTACTGTGAGCAGTGAC
GAGGAGCCTGAGGACAACGGAAAGGGAAACATGGACGAGGAAGAGGACGA
GGAAGGGTTGGTGAAGAGTAGCCGAAAGCGCCGCGGGCGGTTTATCGAAG
ACGACGAGTCAGAGGATGAGGACGAGAACGAGGCTGAGGGACGGGGTGAG
AAGCACCACGCGGGCACCGTCGAAGGGATGCGACATCATCCCGCCATTTG
TGCTGCTGCTACCACCACTGCCCTTGGGAATGCTGATTCTGCGACCGCCC
GGCGCCTTCCCCTCGCACCCGCTTCCGCGCTCGCATCAGTCCCTGCACCC
TTTGCGGCTCCTACGGCCGAGCCGGCAGAGCCAACAGCGCCTGCATCCAT
CCATACCCATGCCGCAGCGTTATCCCCTACTCCCTCAGCAGCAGGAACAG
GAACAGCAATACTCCCCAGGTCTGTGCAAGCAGTAGCACCAGCAGCACAA
GCAGCAGCAGTGGCGATATCAGAGCCCGCAGGCTCTGGAGGAGAGGCGCT
GTCGATGTCAAATGAACTAACTCTTCCCAATGACATAAATGACCTGTGGG
CATGA

Synonyms

Publications