NO06G00910.1, NO06G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00910.1
Unique NameNO06G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr6:303442..305691 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:303442..305691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00910.1 vs.
Match: EWM26087.1 (flagellar outer dynein arm-docking complex protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 501.1 bits (1289), Expect = 5.200e-138
Identity = 297/510 (58.24%), Postives = 366/510 (71.76%), Query Frame = 0 
Query:  150 MKVLDQKQRMGGVNASKENDALIAKQTHILENRLDKTLVKFNQALAENKRLRERIDSLRMDRVVYDSVYKRLERCLHEKKKEMGLVIEDAKRVCVARDKAKSDLVIMKQQAEKEKAEFEREWRELGRLIEEDRHTREAMKKKLELDHRGQRHQQQSRLSPPASGGSLGRIAGKTENT------FPVKKAPASGEVSAVDGP---PNMNMPKDKTAAASAFTSSATVVASTVDPLLLLSPEKLQLYEDAFAKVQEATGINDIDEMVNKLLEAEEKNFSLFNYINELNNEIDQLELLIGENRVEMEKHKGQGSSADTQQKRLARVGANRLQHLKTKAEEYELKYSTATKTINQLKTGIHGIFSRLGCASTTPMEEMLGNQGVTESNIMQYLGFIEQRTIEILQLYTASQAGATGYIGNTGIMALPTSSLATVESSSLSLDKSPHEREDTRASPPASAGDHHNDANPEYDEASATIDEDDDNDSDDRPLTRQELQNKALKRLNVGNAKLRDDS 651
            MKVL+QKQ+MGGVNASKENDA++AKQT +LENRLDKTLVKFNQAL ENKRLRERID LRMDRVVYD+VYKRLERCLHEKKKEM  VIEDAKRVCVARDKAKS++  +KQQAEKEKA+F+REW ELGRLIEEDR  R++++K +E + R QR  +QS  S   +G + G +  K  +         V K  + G+ S + G    P+ N   +K+++A+A     +   +T  PLL L+PEK++LYE+ FA+VQEATG+ DI+EMV K LEAEEKNFSLFNY+N+LN EID+LE  IGEN+ E+EK+K QGS+AD++QKRLAR G  R Q +K KA+EYELKY  ATK INQLKT IH IFSRLGCA+TTPMEE+LGNQGVTESN+MQYLGFIEQRTIEILQLY A Q+       N    +  T    TV+  SL    S  ER++  A+ P +               S      +++D++DRPLTRQELQ KA+    VG +K +  S
Sbjct:    1 MKVLEQKQKMGGVNASKENDAILAKQTQLLENRLDKTLVKFNQALGENKRLRERIDRLRMDRVVYDNVYKRLERCLHEKKKEMAQVIEDAKRVCVARDKAKSEINNLKQQAEKEKAQFQREWAELGRLIEEDRQARDSIQKTMEAERRSQRLSEQSHRSKSPAGRT-GLVTSKPRDNSSGNSPMDVNKQ-SKGDESGIPGEVVSPDRNALNEKSSSATASAVPLSSSGATTAPLLSLTPEKIRLYEEVFAQVQEATGLTDIEEMVTKFLEAEEKNFSLFNYVNDLNTEIDELESFIGENKNEIEKNKDQGSNADSRQKRLARAGEERQQQIKAKADEYELKYIAATKAINQLKTSIHSIFSRLGCATTTPMEEILGNQGVTESNMMQYLGFIEQRTIEILQLYRARQSRDATSSLNEAAHSSSTPFRITVQPPSL----SEIERDEEAATQPHAQATKFRGYTVSKTIKSINHPSFEEDDAEDRPLTRQELQEKAVSSA-VGKSKQQKSS 503
The following BLAST results are available for this feature:
BLAST of NO06G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26087.15.200e-13858.24flagellar outer dynein arm-docking complex protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00910NO06G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00910.1NO06G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00910.1.cds1NO06G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00910.1.cds2NO06G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G00910.1.cds3NO06G00910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00910.1 ID=NO06G00910.1|Name=NO06G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp
ATGGCCTCTGCGAACTCCACGAATTCCCTACAAATGGACAAATCTGGCGC
CTCCATCAGCAGACCATTGAATGCTGTCGCAGAGAATTCGAATCGTCTCG
CAATGTCCCATCGCAAGAAACTCTCAACAAGGGAAGACGTGCCGCTCGTT
CGTGTCCGAAAAGAGGTGAGACTGAGGGAATACGATGACAGCCGGAGCCA
GAGCTATTTCTCCACCTCATATGTCATTCCTTATTTGCAGCGCCAAGAGA
TCGATGCCATTAAGTATAAAAATGAAGTTTTTCGGCTGGACGCCATCCAA
GGAACCCGAGAGGCCAAAATCAATGTCAAATCCGGCGCGGCACATGAAGT
AGCGCGCCTCCAGGACCAGGCGGAGATGTACTTTCAGCGCATACAGGTGG
AAAAGAGGAAGATTGGGGAGCTGGAAAAACAGTTGAAGGTCGCCCAGATG
AAGGTCCTAGATCAGAAGCAAAGGATGGGCGGTGTGAATGCCTCCAAGGA
AAATGACGCCTTGATTGCCAAGCAGACTCACATCCTTGAGAACCGCCTGG
ACAAGACCTTGGTCAAATTCAACCAGGCGCTGGCGGAGAACAAGAGACTC
CGAGAGCGCATCGACAGTCTGCGCATGGATCGCGTCGTATATGACAGTGT
CTACAAGCGGTTAGAGCGCTGCTTGCACGAAAAGAAGAAGGAGATGGGGC
TAGTGATTGAAGACGCCAAACGTGTTTGTGTCGCGCGAGATAAGGCCAAG
AGCGATCTTGTCATCATGAAGCAGCAGGCTGAGAAGGAGAAGGCGGAGTT
CGAGCGAGAATGGCGGGAGCTGGGCCGCTTGATTGAGGAAGATCGACATA
CGCGGGAAGCAATGAAGAAAAAACTAGAACTGGACCACCGAGGTCAACGA
CACCAACAGCAATCACGGCTCTCGCCACCTGCTTCCGGCGGGTCTCTCGG
TAGAATCGCGGGCAAGACGGAAAACACTTTCCCAGTGAAAAAGGCCCCTG
CTTCAGGAGAAGTTTCCGCCGTCGATGGACCCCCTAACATGAACATGCCC
AAGGACAAGACAGCCGCCGCTAGCGCGTTTACTTCTTCTGCCACTGTGGT
AGCCTCAACCGTGGACCCCCTCCTCTTGCTCTCCCCCGAAAAACTGCAAC
TTTACGAGGACGCCTTCGCCAAAGTGCAGGAGGCCACGGGCATTAATGAC
ATTGATGAGATGGTTAATAAGCTTCTCGAGGCGGAGGAGAAGAACTTTTC
GCTGTTTAACTACATTAATGAGCTTAACAACGAGATAGACCAGCTGGAGC
TACTGATTGGGGAAAACAGAGTGGAGATGGAGAAGCACAAGGGCCAAGGC
AGCAGCGCTGACACGCAGCAAAAGCGGCTGGCTCGCGTGGGTGCAAACCG
TTTACAGCACCTCAAAACTAAGGCCGAAGAGTATGAGCTGAAATATAGCA
CGGCCACTAAGACCATCAATCAGCTAAAGACGGGCATCCACGGTATCTTT
TCGCGTCTGGGTTGCGCTAGCACTACACCCATGGAAGAGATGTTAGGGAA
CCAAGGTGTCACTGAATCCAATATAATGCAGTACCTGGGCTTTATTGAAC
AGCGCACGATTGAAATTCTTCAGCTCTACACCGCGAGTCAGGCCGGTGCC
ACGGGCTATATTGGGAACACCGGGATTATGGCACTACCGACCTCGTCGCT
CGCCACGGTGGAGTCTTCCTCCTTATCGTTGGACAAGTCACCGCATGAAA
GAGAAGATACACGCGCGTCACCCCCTGCCTCGGCGGGTGATCATCACAAT
GACGCGAATCCTGAATATGATGAAGCCAGCGCCACTATCGACGAAGATGA
CGATAATGACAGCGATGACCGTCCCTTGACGCGGCAGGAGCTGCAAAATA
AAGCCCTCAAGCGGTTGAATGTGGGCAACGCGAAGCTGCGTGATGACAGT
AAGGTCATAGGATGTGCGCGAACAGGATCTGGGAGCAGGAAATAA
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protein sequence of NO06G00910.1

>NO06G00910.1-protein ID=NO06G00910.1-protein|Name=NO06G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MASANSTNSLQMDKSGASISRPLNAVAENSNRLAMSHRKKLSTREDVPLV
RVRKEVRLREYDDSRSQSYFSTSYVIPYLQRQEIDAIKYKNEVFRLDAIQ
GTREAKINVKSGAAHEVARLQDQAEMYFQRIQVEKRKIGELEKQLKVAQM
KVLDQKQRMGGVNASKENDALIAKQTHILENRLDKTLVKFNQALAENKRL
RERIDSLRMDRVVYDSVYKRLERCLHEKKKEMGLVIEDAKRVCVARDKAK
SDLVIMKQQAEKEKAEFEREWRELGRLIEEDRHTREAMKKKLELDHRGQR
HQQQSRLSPPASGGSLGRIAGKTENTFPVKKAPASGEVSAVDGPPNMNMP
KDKTAAASAFTSSATVVASTVDPLLLLSPEKLQLYEDAFAKVQEATGIND
IDEMVNKLLEAEEKNFSLFNYINELNNEIDQLELLIGENRVEMEKHKGQG
SSADTQQKRLARVGANRLQHLKTKAEEYELKYSTATKTINQLKTGIHGIF
SRLGCASTTPMEEMLGNQGVTESNIMQYLGFIEQRTIEILQLYTASQAGA
TGYIGNTGIMALPTSSLATVESSSLSLDKSPHEREDTRASPPASAGDHHN
DANPEYDEASATIDEDDDNDSDDRPLTRQELQNKALKRLNVGNAKLRDDS
KVIGCARTGSGSRK*
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mRNA from alignment at chr6:303442..305691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00910.1 ID=NO06G00910.1|Name=NO06G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at chr6:303442..305691- (Nannochloropsis oceanica)
ATGGCCTCTGCGAACTCCACGAATTCCCTACAAATGGACAAATCTGGCGC
CTCCATCAGCAGACCATTGAATGCTGTCGCAGAGAATTCGAATCGTCTCG
CAATGTCCCATCGCAAGAAACTCTCAACAAGGGAAGACGTGCCGCTCGTT
CGTGTCCGAAAAGAGGTGAGACTGAGGGAATACGATGACAGCCGGAGCCA
GAGCTATTTCTCCACCTCATATGTCATTCCTTATTTGCAGCGCCAAGAGA
TCGATGCCATTAAGTATAAAAATGAAGTTTTTCGGCTGGACGCCATCCAA
GGAACCCGAGAGGCCAAAATCAATGTCAAATCCGGCGCGGCACATGAAGT
AGCGCGCCTCCAGGACCAGGCGGAGATGTACTTTCAGCGCATACAGGTGG
AAAAGGTGTGTGTATATGGAATAAATGTCATTGATACAAGAAAATCACCA
TTTTCAGACGTATTCCCTTTTGATAACGACAGAGGAAGATTGGGGAGCTG
GAAAAACAGTTGAAGGTCGCCCAGATGAAGGTCCTAGATCAGAAGCAAAG
GATGGGCGGTGTGAATGCCTCCAAGGAAAATGACGCCTTGATTGCCAAGC
AGACTCACATCCTTGAGAACCGCCTGGACAAGACCTTGGTCAAATTCAAC
CAGGCGCTGGCGGAGGTGAGTGCGTGAGTGTGTTTGGGGCTTTCGCGTGT
GGAGGTGTCTATATATGCCACATTTCGCATCATGTTTATGTAGAGCATCT
GAGATAAACTAGTCAACCAGCTGTAAGGATCAATCGGCTATATGCACGCT
TACTTAGCGAATTTGTTCTTATACATGCACACATCCGCCATAGAACAAGA
GACTCCGAGAGCGCATCGACAGTCTGCGCATGGATCGCGTCGTATATGAC
AGTGTCTACAAGCGGTTAGAGCGCTGCTTGCACGAAAAGAAGAAGGAGAT
GGGGCTAGTGATTGAAGACGCCAAACGTGTTTGTGTCGCGCGAGATAAGG
CCAAGAGCGATCTTGTCATCATGAAGCAGCAGGCTGAGAAGGAGAAGGCG
GAGTTCGAGCGAGAATGGCGGGAGCTGGGCCGCTTGATTGAGGAAGATCG
ACATACGCGGGAAGCAATGAAGAAAAAACTAGAACTGGACCACCGAGGTC
AACGACACCAACAGCAATCACGGCTCTCGCCACCTGCTTCCGGCGGGTCT
CTCGGTAGAATCGCGGGCAAGACGGAAAACACTTTCCCAGTGAAAAAGGC
CCCTGCTTCAGGAGAAGTTTCCGCCGTCGATGGACCCCCTAACATGAACA
TGCCCAAGGACAAGACAGCCGCCGCTAGCGCGTTTACTTCTTCTGCCACT
GTGGTAGCCTCAACCGTGGACCCCCTCCTCTTGCTCTCCCCCGAAAAACT
GCAACTTTACGAGGACGCCTTCGCCAAAGTGCAGGAGGCCACGGGCATTA
ATGACATTGATGAGATGGTTAATAAGCTTCTCGAGGCGGAGGAGAAGAAC
TTTTCGCTGTTTAACTACATTAATGAGCTTAACAACGAGATAGACCAGCT
GGAGCTACTGATTGGGGAAAACAGAGTGGAGATGGAGAAGCACAAGGGCC
AAGGCAGCAGCGCTGACACGCAGCAAAAGCGGCTGGCTCGCGTGGGTGCA
AACCGTTTACAGCACCTCAAAACTAAGGCCGAAGAGTATGAGCTGAAATA
TAGCACGGCCACTAAGACCATCAATCAGCTAAAGACGGGCATCCACGGTA
TCTTTTCGCGTCTGGGTTGCGCTAGCACTACACCCATGGAAGAGATGTTA
GGGAACCAAGGTGTCACTGAATCCAATATAATGCAGTACCTGGGCTTTAT
TGAACAGCGCACGATTGAAATTCTTCAGCTCTACACCGCGAGTCAGGCCG
GTGCCACGGGCTATATTGGGAACACCGGGATTATGGCACTACCGACCTCG
TCGCTCGCCACGGTGGAGTCTTCCTCCTTATCGTTGGACAAGTCACCGCA
TGAAAGAGAAGATACACGCGCGTCACCCCCTGCCTCGGCGGGTGATCATC
ACAATGACGCGAATCCTGAATATGATGAAGCCAGCGCCACTATCGACGAA
GATGACGATAATGACAGCGATGACCGTCCCTTGACGCGGCAGGAGCTGCA
AAATAAAGCCCTCAAGCGGTTGAATGTGGGCAACGCGAAGCTGCGTGATG
ACAGTAAGGTCATAGGATGTGCGCGAACAGGATCTGGGAGCAGGAAATAA
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Coding sequence (CDS) from alignment at chr6:303442..305691-

>NO06G00910.1 ID=NO06G00910.1|Name=NO06G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at chr6:303442..305691- (Nannochloropsis oceanica)
ATGGCCTCTGCGAACTCCACGAATTCCCTACAAATGGACAAATCTGGCGC
CTCCATCAGCAGACCATTGAATGCTGTCGCAGAGAATTCGAATCGTCTCG
CAATGTCCCATCGCAAGAAACTCTCAACAAGGGAAGACGTGCCGCTCGTT
CGTGTCCGAAAAGAGGTGAGACTGAGGGAATACGATGACAGCCGGAGCCA
GAGCTATTTCTCCACCTCATATGTCATTCCTTATTTGCAGCGCCAAGAGA
TCGATGCCATTAAGTATAAAAATGAAGTTTTTCGGCTGGACGCCATCCAA
GGAACCCGAGAGGCCAAAATCAATGTCAAATCCGGCGCGGCACATGAAGT
AGCGCGCCTCCAGGACCAGGCGGAGATGTACTTTCAGCGCATACAGGTGG
AAAAGAGGAAGATTGGGGAGCTGGAAAAACAGTTGAAGGTCGCCCAGATG
AAGGTCCTAGATCAGAAGCAAAGGATGGGCGGTGTGAATGCCTCCAAGGA
AAATGACGCCTTGATTGCCAAGCAGACTCACATCCTTGAGAACCGCCTGG
ACAAGACCTTGGTCAAATTCAACCAGGCGCTGGCGGAGAACAAGAGACTC
CGAGAGCGCATCGACAGTCTGCGCATGGATCGCGTCGTATATGACAGTGT
CTACAAGCGGTTAGAGCGCTGCTTGCACGAAAAGAAGAAGGAGATGGGGC
TAGTGATTGAAGACGCCAAACGTGTTTGTGTCGCGCGAGATAAGGCCAAG
AGCGATCTTGTCATCATGAAGCAGCAGGCTGAGAAGGAGAAGGCGGAGTT
CGAGCGAGAATGGCGGGAGCTGGGCCGCTTGATTGAGGAAGATCGACATA
CGCGGGAAGCAATGAAGAAAAAACTAGAACTGGACCACCGAGGTCAACGA
CACCAACAGCAATCACGGCTCTCGCCACCTGCTTCCGGCGGGTCTCTCGG
TAGAATCGCGGGCAAGACGGAAAACACTTTCCCAGTGAAAAAGGCCCCTG
CTTCAGGAGAAGTTTCCGCCGTCGATGGACCCCCTAACATGAACATGCCC
AAGGACAAGACAGCCGCCGCTAGCGCGTTTACTTCTTCTGCCACTGTGGT
AGCCTCAACCGTGGACCCCCTCCTCTTGCTCTCCCCCGAAAAACTGCAAC
TTTACGAGGACGCCTTCGCCAAAGTGCAGGAGGCCACGGGCATTAATGAC
ATTGATGAGATGGTTAATAAGCTTCTCGAGGCGGAGGAGAAGAACTTTTC
GCTGTTTAACTACATTAATGAGCTTAACAACGAGATAGACCAGCTGGAGC
TACTGATTGGGGAAAACAGAGTGGAGATGGAGAAGCACAAGGGCCAAGGC
AGCAGCGCTGACACGCAGCAAAAGCGGCTGGCTCGCGTGGGTGCAAACCG
TTTACAGCACCTCAAAACTAAGGCCGAAGAGTATGAGCTGAAATATAGCA
CGGCCACTAAGACCATCAATCAGCTAAAGACGGGCATCCACGGTATCTTT
TCGCGTCTGGGTTGCGCTAGCACTACACCCATGGAAGAGATGTTAGGGAA
CCAAGGTGTCACTGAATCCAATATAATGCAGTACCTGGGCTTTATTGAAC
AGCGCACGATTGAAATTCTTCAGCTCTACACCGCGAGTCAGGCCGGTGCC
ACGGGCTATATTGGGAACACCGGGATTATGGCACTACCGACCTCGTCGCT
CGCCACGGTGGAGTCTTCCTCCTTATCGTTGGACAAGTCACCGCATGAAA
GAGAAGATACACGCGCGTCACCCCCTGCCTCGGCGGGTGATCATCACAAT
GACGCGAATCCTGAATATGATGAAGCCAGCGCCACTATCGACGAAGATGA
CGATAATGACAGCGATGACCGTCCCTTGACGCGGCAGGAGCTGCAAAATA
AAGCCCTCAAGCGGTTGAATGTGGGCAACGCGAAGCTGCGTGATGACAGT
AAGGTCATAGGATGTGCGCGAACAGGATCTGGGAGCAGGAAATAA
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Synonyms
Publications