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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr6 | genome | chr6:296742..299287 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G00890.1 vs.
Match: EWM26120.1 (Nucleic acid-binding, OB-fold-like protein [Nannochloropsis gaditana]) HSP 1 Score: 543.5 bits (1399), Expect = 5.100e-151 Identity = 274/352 (77.84%), Postives = 297/352 (84.38%), Query Frame = 0
Query: 22 KQQERKARNTSTNKKRKHPDAAAAAATAGAPSAPAAELVPRHYTVSIAVAGSIVLNAQSPELRTYLIGEIARAAAIFQVDEIVVFADASGAGASYNWGDPNLFFGRLLQYIETPQYLRKAIFPHHSDLRFAGLLNPLDAPHHPRAHEQMVYREGVTVDTPASISGGSLVNVGLRNYIHLDRRLKPGVRVTVKMTSAASSSGSSRKHQASPQQEMEGVAVSPEAPRETHGLYWGYTTRLAKSLTEVFAGSPYKEGYDLTVGTSERGHQSIDDEDFALPAFRHLLVVFGGVAGLEACVEAAEDLDLPAGKTHTLFDKWLNVCPDQGSRTIRTEEAVPITMARLRPFIVKSGRRE 374
K Q +K N +KRKHP AAA L PRHYTVSIAVAGSIVLNAQSPELRTYL+GEIARAAAIFQVDEIVVF D+SGA SYNWGDPNLFFGRLLQYIETPQYLRKAIFPHHSDLRFAG+LNPLDAPHHPRAHE +VYREGVTVDTPA+ +GGSLVNVGLRNY+HLDRRLKPGVRVTVK+ S+ GS +KHQ P E+ GVAVSP APRET GLYWGYTTRLAK+LTEVFA SP+K GYD+TVGTSERGHQSI+D DF LPAF+HLLVVFGGVAGLEACVE +L L A +THTLFD WLN CPDQGSRTIRTEEAVPITMARLRPFIVK+G+ +
Sbjct: 17 KGQHKKVTNI---RKRKHPATNLAAAVEDVAPQQHVSLTPRHYTVSIAVAGSIVLNAQSPELRTYLVGEIARAAAIFQVDEIVVFGDSSGASPSYNWGDPNLFFGRLLQYIETPQYLRKAIFPHHSDLRFAGILNPLDAPHHPRAHENLVYREGVTVDTPANSAGGSLVNVGLRNYVHLDRRLKPGVRVTVKLISSDPVGGSGQKHQQRP-HELSGVAVSPAAPRETAGLYWGYTTRLAKNLTEVFAQSPFKGGYDVTVGTSERGHQSIEDADFVLPAFKHLLVVFGGVAGLEACVEGTAELGLSASETHTLFDVWLNTCPDQGSRTIRTEEAVPITMARLRPFIVKAGKND 364
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G00890.1 ID=NO06G00890.1|Name=NO06G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp
GGAAGGGGGAGGGGGAGGAGGGGGAAGAGGAGGAAGAAAGGGGAAGCCAT
CCCCGGCATTCCATATCAAGTCTAATTCCAGGTGCACAAGCAGTCATTCG
TTTGGCTTTGAGGAGAAGAGTGTCAAGGTGGTGACAAGCGAGGACACACA
TTTGACGGAGCTCTTCCTTTTTTCCCGTCAGAAGAAATTTGGGATGGAGT
CAGGCATTAAGATGTGCGAGAACTCTAAGCATGGAGGAATGTTAAGAAGT
CGCTCCTGATAAGCTTACATGTGCCATGAAGAAGAAGATCGATGGCATCC
GGGGAAGAATGGTAGCCATGGAGAGAGAAGCGGCGCGAGAGGAGAAAATG
GGGGAGAATCGGGAAAAGAGTAGAAGCCTGCGACGGGAGATTAAGTAAGT
TACCAAGGCTTGGTACCGCGCAAATGAGAGAGCCAGCAATGTGGTAAGCG
ATCTCCATTTCAAGACGACCGCCTTTCTCTTTCAACGGTTTGATGTAATC
ATCGCTCCGAAATTGGGTGTGGGGAGGATGTTAGGGGGGACGAGTATTCT
GACGGCTGGGACCAAGTAGACGACGCGTTTCCAGTGGCATAGCTCTTCAA
CAAGCGTATCAGGATGATGGCCGAGGTATGTAGGAGGGTCGTGTTGGATC
TGGAGGAGCATGGCACGAGGCAGACGTGCAGCTCTTGCGGTCTGGTCAAC
GAGGGGTTAGAGGGCAGCAAAGTTTTAAAGTGTGAACGTTGCGGATACAA
TAAAGACTGGGAAATAATTCTGCCAAGGGCCACTAGTTGAAAGCACTCGT
TGGTTGGAGGGATCATATAGTATAGTGTCGTTGTTTGCCCCATAACGCTT
TTTCGTGAGCATTTTATTTGAAGTCAGGTAGGTGCGTGGTGCCTGTCCTA
CAAATGGATGTTCAAGAAAAGGTAAATAACTGTTACGATGATTGCCCAGT
ATTCCATTTAGGGTATCAAACAAGCCATTTTGGTCTTCCTTTCCTCTATC
CTCCTTTTCCTTCCCTCTTTCGTTTGACGCGATTTATTCAGCCCAAAGCA
TTTTATTCCAATAGATACGGGCATACAAAGAATCCCGAGTCATCAATGGT
AGCCTGAGCGTCATTCATGAATGAAAAGTCATCAAAGCATTGATGACCCA
TTGGTGACCTCCCACCATGGTGACGGCACTGGCGAGGAGGGTTTGCGGTG
ATGTAATGAATACCCTCATGCACACACACCCCTTCCCATATTCTCAGCTT
CTCTCCCCCTTTCCTTTCTCATCACTCATCTCTATATACAGGTCTTCATG
ACCCCCAATCATTGAAGTGGCCGAAATTCCTCTCACTCGGCCCGCGGCCC
GTGTCCTCTGCCCCCTCTGTGGTCTGTCCATGGAGGGCAATGCCGCCAAC
CGTTGTGCCCATCGTCCGCGCGCTCGCAGGGACAAGGAGCCGAAGCAGCA
AGAGCGGAAGGCCAGAAACACTTCGACGAACAAGAAGCGCAAGCACCCGG
ACGCTGCCGCTGCTGCTGCCACTGCTGGTGCTCCATCCGCCCCCGCTGCG
GAGCTCGTGCCCCGCCATTATACAGTCTCGATTGCAGTGGCGGGCTCGAT
TGTGCTGAACGCCCAGTCGCCCGAGTTGCGGACGTACTTGATAGGTGAAA
TTGCACGTGCAGCGGCCATCTTTCAGGTGGATGAGATCGTCGTATTTGCA
GACGCTTCGGGCGCGGGGGCGTCGTACAATTGGGGCGATCCCAATCTCTT
CTTCGGTCGTCTTTTGCAGTACATTGAGACGCCACAGTACCTCCGGAAGG
CTATCTTTCCCCACCACTCTGATCTGCGCTTTGCCGGATTGCTCAACCCC
CTGGATGCGCCTCATCATCCACGTGCACACGAACAGATGGTGTATCGAGA
GGGCGTGACGGTCGATACACCTGCCAGTATCTCAGGAGGCTCCCTTGTCA
ATGTTGGCCTGCGGAACTACATCCACCTCGACCGGCGCCTCAAGCCCGGC
GTCCGTGTCACGGTGAAGATGACCTCGGCTGCTTCTTCATCTGGATCATC
ACGCAAGCACCAAGCTTCCCCACAACAAGAGATGGAGGGCGTGGCCGTCT
CCCCCGAGGCGCCCCGCGAAACACACGGCCTCTACTGGGGCTACACAACC
CGCCTAGCCAAAAGCCTGACCGAGGTCTTTGCCGGAAGCCCTTACAAAGA
GGGATACGACTTGACGGTGGGTACGTCAGAGAGGGGACATCAGAGCATTG
ATGACGAGGATTTTGCTTTGCCAGCTTTTCGGCACCTGTTGGTTGTGTTT
GGGGGGGTAGCGGGCCTGGAAGCGTGTGTCGAGGCAGCGGAGGATTTGGA
TCTGCCTGCGGGCAAGACACACACGCTGTTTGACAAATGGTTGAATGTGT
GCCCAGACCAGGGCAGTCGCACCATTCGAACGGAGGAGGCAGTGCCTATT
ACCATGGCGAGGTTGCGCCCTTTCATTGTCAAGAGCGGACGGAGGGAGAA
GTAAGAGAGAAAGGAAAGAAACAAGAGCAAAATGTCCAAATGATCA back to topprotein sequence of NO06G00890.1 >NO06G00890.1-protein ID=NO06G00890.1-protein|Name=NO06G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MEGNAANRCAHRPRARRDKEPKQQERKARNTSTNKKRKHPDAAAAAATAG
APSAPAAELVPRHYTVSIAVAGSIVLNAQSPELRTYLIGEIARAAAIFQV
DEIVVFADASGAGASYNWGDPNLFFGRLLQYIETPQYLRKAIFPHHSDLR
FAGLLNPLDAPHHPRAHEQMVYREGVTVDTPASISGGSLVNVGLRNYIHL
DRRLKPGVRVTVKMTSAASSSGSSRKHQASPQQEMEGVAVSPEAPRETHG
LYWGYTTRLAKSLTEVFAGSPYKEGYDLTVGTSERGHQSIDDEDFALPAF
RHLLVVFGGVAGLEACVEAAEDLDLPAGKTHTLFDKWLNVCPDQGSRTIR
TEEAVPITMARLRPFIVKSGRREK* back to topmRNA from alignment at chr6:296742..299287- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G00890.1 ID=NO06G00890.1|Name=NO06G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp|location=Sequence derived from alignment at chr6:296742..299287- (Nannochloropsis oceanica)
GGAAGGGGGAGGGGGAGGAGGGGGAAGAGGAGGAAGAAAGGGGAAGCCAT
CCCCGGCATTCCATATCAAGTCTAATTCCAGGTGCACAAGCAGTCATTCG
TTTGGCTTTGAGGAGAAGAGTGTCAAGGTGGTGACAAGCGAGGACACACA
TTTGACGGAGCTCTTCCTTTTTTCCCGTCAGAAGAAATTTGGGATGGAGT
CAGGCATTAAGATGTGCGAGAACTCTAAGCATGGAGGAATGTTAAGAAGT
CGCTCCTGATAAGCTTACATGTGCCATGAAGAAGAAGATCGATGGCATCC
GGGGAAGAATGGTAGCCATGGAGAGAGAAGCGGCGCGAGAGGAGAAAATG
GGGGAGAATCGGGAAAAGAGTAGAAGCCTGCGACGGGAGATTAAGTAAGT
TACCAAGGCTTGGTACCGCGCAAATGAGAGAGCCAGCAATGTGGTAAGCG
ATCTCCATTTCAAGACGACCGCCTTTCTCTTTCAACGGTTTGATGTAATC
ATCGCTCCGAAATTGGGTGTGGGGAGGATGTTAGGGGGGACGAGTATTCT
GACGGCTGGGACCAAGTAGACGACGCGTTTCCAGTGGCATAGCTCTTCAA
CAAGCGTATCAGGATGATGGCCGAGGTATGTAGGAGGGTCGTGTTGGATC
TGGAGGAGCATGGCACGAGGCAGACGTGCAGCTCTTGCGGTCTGGTCAAC
GAGGGGTTAGAGGGCAGCAAAGTTTTAAAGTGTGAACGTTGCGGATACAA
TAAAGACTGGGAAATAATTCTGCCAAGGGCCACTAGTTGAAAGCACTCGT
TGGTTGGAGGGATCATATAGTATAGTGTCGTTGTTTGCCCCATAACGCTT
TTTCGTGAGCATTTTATTTGAAGTCAGGTAGGTGCGTGGTGCCTGTCCTA
CAAATGGATGTTCAAGAAAAGGTAAATAACTGTTACGATGATTGCCCAGT
ATTCCATTTAGGGTATCAAACAAGCCATTTTGGTCTTCCTTTCCTCTATC
CTCCTTTTCCTTCCCTCTTTCGTTTGACGCGATTTATTCAGCCCAAAGCA
TTTTATTCCAATAGATACGGGCATACAAAGAATCCCGAGTCATCAATGGT
AGCCTGAGCGTCATTCATGAATGAAAAGTCATCAAAGCATTGATGACCCA
TTGGTGACCTCCCACCATGGTGACGGCACTGGCGAGGAGGGTTTGCGGTG
ATGTAATGAATACCCTCATGCACACACACCCCTTCCCATATTCTCAGCTT
CTCTCCCCCTTTCCTTTCTCATCACTCATCTCTATATACAGGTCTTCATG
ACCCCCAATCATTGAAGTGGCCGAAATTCCTCTCACTCGGCCCGCGGCCC
GTGTCCTCTGCCCCCTCTGTGGTCTGTCCATGGAGGGCAATGCCGCCAAC
CGTTGTGCCCATCGTCCGCGCGCTCGCAGGGACAAGGAGCCGAAGCAGCA
AGAGCGGAAGGCCAGAAACACTTCGACGAACAAGAAGCGCAAGCACCCGG
ACGCTGCCGCTGCTGCTGCCACTGCTGGTGCTCCATCCGCCCCCGCTGCG
GAGCTCGTGCCCCGCCATTATACAGTCTCGATTGCAGTGGCGGGCTCGAT
TGTGCTGAACGCCCAGTCGCCCGAGTTGCGGACGTACTTGATAGGTGAAA
TTGCACGTGCAGCGGCCATCTTTCAGGTGGATGAGATCGTCGTATTTGCA
GACGCTTCGGGCGCGGGGGCGTCGTACAATTGGGGCGATCCCAATCTCTT
CTTCGGTCGTCTTTTGCAGTACATTGAGACGCCACAGTACCTCCGGAAGG
CTATCTTTCCCCACCACTCTGATCTGCGCTTTGCCGGATTGCTCAACCCC
CTGGATGCGCCTCATCATCCACGTGCACACGAACAGATGGTGTATCGAGA
GGGCGTGACGGTCGATACACCTGCCAGTATCTCAGGAGGCTCCCTTGTCA
ATGTTGGCCTGCGGAACTACATCCACCTCGACCGGCGCCTCAAGCCCGGC
GTCCGTGTCACGGTGAAGATGACCTCGGCTGCTTCTTCATCTGGATCATC
ACGCAAGCACCAAGCTTCCCCACAACAAGAGATGGAGGGCGTGGCCGTCT
CCCCCGAGGCGCCCCGCGAAACACACGGCCTCTACTGGGGCTACACAACC
CGCCTAGCCAAAAGCCTGACCGAGGTCTTTGCCGGAAGCCCTTACAAAGA
GGGATACGACTTGACGGTGGGTACGTCAGAGAGGGGACATCAGAGCATTG
ATGACGAGGATTTTGCTTTGCCAGCTTTTCGGCACCTGTTGGTTGTGTTT
GGGGGGGTAGCGGGCCTGGAAGCGTGTGTCGAGGCAGCGGAGGATTTGGA
TCTGCCTGCGGGCAAGACACACACGCTGTTTGACAAATGGTTGAATGTGT
GCCCAGACCAGGGCAGTCGCACCATTCGAACGGAGGAGGCAGTGCCTATT
ACCATGGCGAGGTTGCGCCCTTTCATTGTCAAGAGCGGACGGAGGGAGAA
GTAAGAGAGAAAGGAAAGAAACAAGAGCAAAATGTCCAAATGATCA back to topCoding sequence (CDS) from alignment at chr6:296742..299287- >NO06G00890.1 ID=NO06G00890.1|Name=NO06G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at chr6:296742..299287- (Nannochloropsis oceanica)
ATGGAGGGCAATGCCGCCAACCGTTGTGCCCATCGTCCGCGCGCTCGCAG
GGACAAGGAGCCGAAGCAGCAAGAGCGGAAGGCCAGAAACACTTCGACGA
ACAAGAAGCGCAAGCACCCGGACGCTGCCGCTGCTGCTGCCACTGCTGGT
GCTCCATCCGCCCCCGCTGCGGAGCTCGTGCCCCGCCATTATACAGTCTC
GATTGCAGTGGCGGGCTCGATTGTGCTGAACGCCCAGTCGCCCGAGTTGC
GGACGTACTTGATAGGTGAAATTGCACGTGCAGCGGCCATCTTTCAGGTG
GATGAGATCGTCGTATTTGCAGACGCTTCGGGCGCGGGGGCGTCGTACAA
TTGGGGCGATCCCAATCTCTTCTTCGGTCGTCTTTTGCAGTACATTGAGA
CGCCACAGTACCTCCGGAAGGCTATCTTTCCCCACCACTCTGATCTGCGC
TTTGCCGGATTGCTCAACCCCCTGGATGCGCCTCATCATCCACGTGCACA
CGAACAGATGGTGTATCGAGAGGGCGTGACGGTCGATACACCTGCCAGTA
TCTCAGGAGGCTCCCTTGTCAATGTTGGCCTGCGGAACTACATCCACCTC
GACCGGCGCCTCAAGCCCGGCGTCCGTGTCACGGTGAAGATGACCTCGGC
TGCTTCTTCATCTGGATCATCACGCAAGCACCAAGCTTCCCCACAACAAG
AGATGGAGGGCGTGGCCGTCTCCCCCGAGGCGCCCCGCGAAACACACGGC
CTCTACTGGGGCTACACAACCCGCCTAGCCAAAAGCCTGACCGAGGTCTT
TGCCGGAAGCCCTTACAAAGAGGGATACGACTTGACGGTGGGTACGTCAG
AGAGGGGACATCAGAGCATTGATGACGAGGATTTTGCTTTGCCAGCTTTT
CGGCACCTGTTGGTTGTGTTTGGGGGGGTAGCGGGCCTGGAAGCGTGTGT
CGAGGCAGCGGAGGATTTGGATCTGCCTGCGGGCAAGACACACACGCTGT
TTGACAAATGGTTGAATGTGTGCCCAGACCAGGGCAGTCGCACCATTCGA
ACGGAGGAGGCAGTGCCTATTACCATGGCGAGGTTGCGCCCTTTCATTGT
CAAGAGCGGACGGAGGGAGAAGTAA back to top
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