NO06G00880.1, NO06G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00880.1
Unique NameNO06G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length987
Alignment locationchr6:295730..296716 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:295730..296716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G00880.1 vs.
Match: EWM26118.1 (hypothetical protein Naga_100014g37 [Nannochloropsis gaditana])

HSP 1 Score: 372.5 bits (955), Expect = 1.400e-99
Identity = 189/328 (57.62%), Postives = 240/328 (73.17%), Query Frame = 0 
Query:    1 MAARRALSTSNSSGA-TLPLHRMSVSITSWFQLPDQGMMRYEMLSRGTAFCVHPPAGKGGSTSPVEAANVPLYFFTCSHVTAPWRWPKLYPLPWLEYVKEEHTLCTLHVTDGRRGPVVKRFLLQPTVVHHDSLDVCVLRLQNQEYAIRQMAKYGLRLEPLVLGSNVPAPGHPVVSPGFAVER-EGKGIGSAHDNNYDNNTAGILEDSDTGKTVHLDLKADEEPRRLCVSMGTVNKYKDRHSRGFAVMDRELGDGMCGAPLLDLRDEGRCIGLVEGIAPPMEEEKKKEEVEGMEPTVRKALEVRRAIAGNAAFIYGRELVDLLAKASSS 327
            M   R+ S   SS + TLPLHR+SVSI+SWF+L DQGM+++EML RGTAF V  P  K        + + PL FFTCSHV APWRWPKLYP+PWLE+V+EEH+ C LHVT+ + G V++RFL+   VVHHDSLDVC LRLQ+QE  +++MAK+GL L PLVL   VP+ G+ VVSPGFAVER + K    +  +  D     ++ED +TG +V LDL+ D+EPRRLCVS+GTV+ YKDR +RGFAVMDR LGDG+CGAPLLDLR EGRC+GLVEGI PP+E+    E  +       + +E+R+AIAGNA FIYG++L+DLL K S +
Sbjct:   23 MGRHRSFSAGVSSTSNTLPLHRISVSISSWFRLADQGMLQHEMLCRGTAFGVQLPQRK--------SKHAPLIFFTCSHVAAPWRWPKLYPVPWLEHVREEHSRCVLHVTEVQTGRVLERFLMDSNVVHHDSLDVCALRLQDQEKVMQRMAKHGLPLHPLVLSERVPSSGNAVVSPGFAVERLQRKADDGSLSDGEDGEYTEVVEDLETGGSVRLDLRTDQEPRRLCVSLGTVSHYKDRQARGFAVMDRVLGDGVCGAPLLDLRQEGRCVGLVEGIVPPLED--GAEATQTGSGLAGREVELRKAIAGNAGFIYGQQLIDLLEKVSDN 340
The following BLAST results are available for this feature:
BLAST of NO06G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26118.11.400e-9957.62hypothetical protein Naga_100014g37 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00880NO06G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00880.1NO06G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00880.1.cds1NO06G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00880.1 ID=NO06G00880.1|Name=NO06G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ATGGCAGCCCGCCGCGCCTTGAGCACCAGCAATAGCAGCGGTGCTACCTT
ACCATTACATCGCATGAGTGTCTCTATCACTTCCTGGTTCCAACTGCCTG
ACCAAGGCATGATGCGGTACGAAATGCTCAGTCGAGGCACGGCCTTTTGC
GTGCACCCGCCTGCAGGGAAAGGAGGCAGCACGAGCCCTGTCGAAGCAGC
AAATGTTCCCCTCTATTTCTTCACCTGCTCACATGTGACGGCACCCTGGC
GCTGGCCAAAACTTTACCCGTTGCCATGGCTGGAGTACGTGAAAGAGGAA
CACACCCTGTGCACGCTGCATGTAACAGATGGGAGGAGGGGCCCGGTAGT
GAAGCGATTCCTACTACAGCCCACCGTCGTCCACCATGACTCGCTAGACG
TGTGTGTGCTTCGACTTCAGAATCAAGAATATGCCATACGGCAGATGGCC
AAGTATGGACTGCGACTTGAGCCCCTTGTACTGGGCAGCAACGTACCCGC
GCCGGGTCATCCCGTGGTCTCGCCAGGTTTTGCAGTGGAGCGCGAAGGAA
AGGGAATAGGCAGTGCCCATGACAACAACTACGACAACAACACTGCCGGG
ATACTTGAAGACTCCGATACTGGCAAGACGGTACATTTAGATCTGAAAGC
AGACGAGGAGCCCCGTCGACTGTGTGTGAGTATGGGCACGGTGAATAAGT
ACAAGGACCGACACAGCCGTGGCTTTGCTGTCATGGACCGTGAATTGGGT
GATGGGATGTGTGGTGCCCCTTTGTTGGATTTAAGGGATGAAGGGAGATG
TATAGGGCTTGTGGAAGGAATTGCTCCACCGATGGAGGAGGAAAAAAAGA
AAGAGGAAGTGGAGGGGATGGAGCCGACGGTGAGAAAAGCGCTGGAGGTC
CGGAGGGCAATTGCGGGGAATGCCGCCTTCATTTATGGCCGTGAGTTGGT
GGATCTTCTTGCGAAAGCTTCTTCAAGCACTCAATAA
back to top

protein sequence of NO06G00880.1

>NO06G00880.1-protein ID=NO06G00880.1-protein|Name=NO06G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MAARRALSTSNSSGATLPLHRMSVSITSWFQLPDQGMMRYEMLSRGTAFC
VHPPAGKGGSTSPVEAANVPLYFFTCSHVTAPWRWPKLYPLPWLEYVKEE
HTLCTLHVTDGRRGPVVKRFLLQPTVVHHDSLDVCVLRLQNQEYAIRQMA
KYGLRLEPLVLGSNVPAPGHPVVSPGFAVEREGKGIGSAHDNNYDNNTAG
ILEDSDTGKTVHLDLKADEEPRRLCVSMGTVNKYKDRHSRGFAVMDRELG
DGMCGAPLLDLRDEGRCIGLVEGIAPPMEEEKKKEEVEGMEPTVRKALEV
RRAIAGNAAFIYGRELVDLLAKASSSTQ*
back to top

mRNA from alignment at chr6:295730..296716+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00880.1 ID=NO06G00880.1|Name=NO06G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at chr6:295730..296716+ (Nannochloropsis oceanica)
ATGGCAGCCCGCCGCGCCTTGAGCACCAGCAATAGCAGCGGTGCTACCTT
ACCATTACATCGCATGAGTGTCTCTATCACTTCCTGGTTCCAACTGCCTG
ACCAAGGCATGATGCGGTACGAAATGCTCAGTCGAGGCACGGCCTTTTGC
GTGCACCCGCCTGCAGGGAAAGGAGGCAGCACGAGCCCTGTCGAAGCAGC
AAATGTTCCCCTCTATTTCTTCACCTGCTCACATGTGACGGCACCCTGGC
GCTGGCCAAAACTTTACCCGTTGCCATGGCTGGAGTACGTGAAAGAGGAA
CACACCCTGTGCACGCTGCATGTAACAGATGGGAGGAGGGGCCCGGTAGT
GAAGCGATTCCTACTACAGCCCACCGTCGTCCACCATGACTCGCTAGACG
TGTGTGTGCTTCGACTTCAGAATCAAGAATATGCCATACGGCAGATGGCC
AAGTATGGACTGCGACTTGAGCCCCTTGTACTGGGCAGCAACGTACCCGC
GCCGGGTCATCCCGTGGTCTCGCCAGGTTTTGCAGTGGAGCGCGAAGGAA
AGGGAATAGGCAGTGCCCATGACAACAACTACGACAACAACACTGCCGGG
ATACTTGAAGACTCCGATACTGGCAAGACGGTACATTTAGATCTGAAAGC
AGACGAGGAGCCCCGTCGACTGTGTGTGAGTATGGGCACGGTGAATAAGT
ACAAGGACCGACACAGCCGTGGCTTTGCTGTCATGGACCGTGAATTGGGT
GATGGGATGTGTGGTGCCCCTTTGTTGGATTTAAGGGATGAAGGGAGATG
TATAGGGCTTGTGGAAGGAATTGCTCCACCGATGGAGGAGGAAAAAAAGA
AAGAGGAAGTGGAGGGGATGGAGCCGACGGTGAGAAAAGCGCTGGAGGTC
CGGAGGGCAATTGCGGGGAATGCCGCCTTCATTTATGGCCGTGAGTTGGT
GGATCTTCTTGCGAAAGCTTCTTCAAGCACTCAATAA
back to top

Coding sequence (CDS) from alignment at chr6:295730..296716+

>NO06G00880.1 ID=NO06G00880.1|Name=NO06G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr6:295730..296716+ (Nannochloropsis oceanica)
ATGGCAGCCCGCCGCGCCTTGAGCACCAGCAATAGCAGCGGTGCTACCTT
ACCATTACATCGCATGAGTGTCTCTATCACTTCCTGGTTCCAACTGCCTG
ACCAAGGCATGATGCGGTACGAAATGCTCAGTCGAGGCACGGCCTTTTGC
GTGCACCCGCCTGCAGGGAAAGGAGGCAGCACGAGCCCTGTCGAAGCAGC
AAATGTTCCCCTCTATTTCTTCACCTGCTCACATGTGACGGCACCCTGGC
GCTGGCCAAAACTTTACCCGTTGCCATGGCTGGAGTACGTGAAAGAGGAA
CACACCCTGTGCACGCTGCATGTAACAGATGGGAGGAGGGGCCCGGTAGT
GAAGCGATTCCTACTACAGCCCACCGTCGTCCACCATGACTCGCTAGACG
TGTGTGTGCTTCGACTTCAGAATCAAGAATATGCCATACGGCAGATGGCC
AAGTATGGACTGCGACTTGAGCCCCTTGTACTGGGCAGCAACGTACCCGC
GCCGGGTCATCCCGTGGTCTCGCCAGGTTTTGCAGTGGAGCGCGAAGGAA
AGGGAATAGGCAGTGCCCATGACAACAACTACGACAACAACACTGCCGGG
ATACTTGAAGACTCCGATACTGGCAAGACGGTACATTTAGATCTGAAAGC
AGACGAGGAGCCCCGTCGACTGTGTGTGAGTATGGGCACGGTGAATAAGT
ACAAGGACCGACACAGCCGTGGCTTTGCTGTCATGGACCGTGAATTGGGT
GATGGGATGTGTGGTGCCCCTTTGTTGGATTTAAGGGATGAAGGGAGATG
TATAGGGCTTGTGGAAGGAATTGCTCCACCGATGGAGGAGGAAAAAAAGA
AAGAGGAAGTGGAGGGGATGGAGCCGACGGTGAGAAAAGCGCTGGAGGTC
CGGAGGGCAATTGCGGGGAATGCCGCCTTCATTTATGGCCGTGAGTTGGT
GGATCTTCTTGCGAAAGCTTCTTCAAGCACTCAATAA
back to top
Synonyms
Publications