NO06G00870.1, NO06G00870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G00870.1
Unique NameNO06G00870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length858
Alignment locationchr6:294636..295493 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:294636..295493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G00870.1 vs.
Match: EWM26080.1 (hypothetical protein Naga_100014g38 [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.900e-73
Identity = 143/280 (51.07%), Postives = 187/280 (66.79%), Query Frame = 0 
Query:    7 RPLAKQFRSVVSVSSHFKVPDQGMTEYELLSRGTAFCLSQPGPLPSAPEVVLVTCSHVLAPYKWRQHFKEPWLDFVNDEHVEYRIQAWKQEESDPSRIQLGAETRVYGKSVHHHSLDLCMLPIHKNTVDAYELLSLEDRDQQEPLAEGEELTFLGFPS--AINCPGEEQREKLGVLTPRRVQGRALASIRDKQGRTYAKTEERLTVGMSGGPVVDRHGRCCGIFQGILPPPPQSPAEEEAQAACDLDPTLRSLQVEEWERHAGFIPLTAVRAFLEINLVK 285
            R  A  +R+++SVSS+FK+P+QGM +YELLS+GT FCLS  GP   + +V+L++CSHVLAPY+W+Q+FK+PWL FV DEHVE RI+ W  E  +P   +   E R+ G   HH  LDLC++P+    V+   L+  ++RD  E + E E LTFLGFPS   IN       +K   L    +QG+AL S  D QGRTYAKT+ERL VGMSGGPV+D  GR CG+FQGILPP P++P EE  QA   LDP LR LQ+   E HA FIP  A+R ++   ++K
Sbjct:   51 RTKASHYRTILSVSSYFKLPEQGMKDYELLSQGTGFCLS--GPPALSTKVILLSCSHVLAPYRWQQYFKKPWLKFVKDEHVERRIKIWTYEAGNPEAGRWSNEARIEGTPAHHSCLDLCIIPLENGIVETCALVPYDERDDGEVMIEKENLTFLGFPSTDTINI------DKKACL--MHIQGKALLSFSDTQGRTYAKTKERLVVGMSGGPVLDGSGRFCGLFQGILPPAPRTPEEERQQADGGLDPVLRPLQIRNSELHAAFIPQFAIREYINSAVIK 320
The following BLAST results are available for this feature:
BLAST of NO06G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26080.11.900e-7351.07hypothetical protein Naga_100014g38 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G00870NO06G00870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G00870.1NO06G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G00870.1.cds1NO06G00870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G00870.1 ID=NO06G00870.1|Name=NO06G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGCCATGGACCAAGACAAGACCCCTAGCCAAGCAGTTCCGCAGTGTTGT
TAGCGTCTCGTCACATTTCAAGGTCCCAGATCAAGGCATGACGGAGTACG
AGCTGCTCAGCCGGGGCACTGCCTTTTGCCTCTCCCAACCTGGCCCTCTT
CCTTCTGCTCCTGAAGTCGTCCTCGTAACCTGCTCCCACGTCCTGGCACC
CTATAAATGGCGACAGCATTTTAAAGAACCGTGGCTTGACTTTGTAAATG
ACGAGCACGTCGAGTACCGAATTCAGGCGTGGAAACAGGAGGAGAGCGAC
CCCAGCAGAATTCAGCTGGGTGCCGAGACGAGGGTGTACGGCAAGTCAGT
TCACCACCATAGTCTAGACTTATGTATGCTACCTATACATAAGAATACAG
TAGATGCATATGAATTACTATCATTGGAGGACAGGGACCAACAAGAGCCC
CTTGCAGAGGGCGAGGAATTGACATTTCTAGGCTTTCCCTCCGCCATAAA
CTGTCCTGGCGAGGAACAGCGCGAGAAGCTTGGCGTGCTAACCCCACGTC
GAGTGCAAGGGCGGGCGCTCGCATCGATCCGCGACAAACAGGGTCGAACT
TATGCCAAGACAGAAGAGAGACTGACGGTGGGCATGAGTGGTGGGCCGGT
GGTCGATCGGCACGGGCGATGTTGCGGCATCTTTCAAGGCATTCTGCCCC
CGCCGCCTCAATCCCCCGCAGAAGAAGAGGCGCAAGCCGCCTGTGACCTC
GACCCTACGCTTCGGTCACTTCAAGTAGAAGAATGGGAACGGCATGCCGG
GTTCATCCCCCTGACGGCTGTCCGTGCATTTCTTGAAATTAATTTAGTCA
AATATTGA
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protein sequence of NO06G00870.1

>NO06G00870.1-protein ID=NO06G00870.1-protein|Name=NO06G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MPWTKTRPLAKQFRSVVSVSSHFKVPDQGMTEYELLSRGTAFCLSQPGPL
PSAPEVVLVTCSHVLAPYKWRQHFKEPWLDFVNDEHVEYRIQAWKQEESD
PSRIQLGAETRVYGKSVHHHSLDLCMLPIHKNTVDAYELLSLEDRDQQEP
LAEGEELTFLGFPSAINCPGEEQREKLGVLTPRRVQGRALASIRDKQGRT
YAKTEERLTVGMSGGPVVDRHGRCCGIFQGILPPPPQSPAEEEAQAACDL
DPTLRSLQVEEWERHAGFIPLTAVRAFLEINLVKY*
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mRNA from alignment at chr6:294636..295493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G00870.1 ID=NO06G00870.1|Name=NO06G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at chr6:294636..295493- (Nannochloropsis oceanica)
ATGCCATGGACCAAGACAAGACCCCTAGCCAAGCAGTTCCGCAGTGTTGT
TAGCGTCTCGTCACATTTCAAGGTCCCAGATCAAGGCATGACGGAGTACG
AGCTGCTCAGCCGGGGCACTGCCTTTTGCCTCTCCCAACCTGGCCCTCTT
CCTTCTGCTCCTGAAGTCGTCCTCGTAACCTGCTCCCACGTCCTGGCACC
CTATAAATGGCGACAGCATTTTAAAGAACCGTGGCTTGACTTTGTAAATG
ACGAGCACGTCGAGTACCGAATTCAGGCGTGGAAACAGGAGGAGAGCGAC
CCCAGCAGAATTCAGCTGGGTGCCGAGACGAGGGTGTACGGCAAGTCAGT
TCACCACCATAGTCTAGACTTATGTATGCTACCTATACATAAGAATACAG
TAGATGCATATGAATTACTATCATTGGAGGACAGGGACCAACAAGAGCCC
CTTGCAGAGGGCGAGGAATTGACATTTCTAGGCTTTCCCTCCGCCATAAA
CTGTCCTGGCGAGGAACAGCGCGAGAAGCTTGGCGTGCTAACCCCACGTC
GAGTGCAAGGGCGGGCGCTCGCATCGATCCGCGACAAACAGGGTCGAACT
TATGCCAAGACAGAAGAGAGACTGACGGTGGGCATGAGTGGTGGGCCGGT
GGTCGATCGGCACGGGCGATGTTGCGGCATCTTTCAAGGCATTCTGCCCC
CGCCGCCTCAATCCCCCGCAGAAGAAGAGGCGCAAGCCGCCTGTGACCTC
GACCCTACGCTTCGGTCACTTCAAGTAGAAGAATGGGAACGGCATGCCGG
GTTCATCCCCCTGACGGCTGTCCGTGCATTTCTTGAAATTAATTTAGTCA
AATATTGA
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Coding sequence (CDS) from alignment at chr6:294636..295493-

>NO06G00870.1 ID=NO06G00870.1|Name=NO06G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr6:294636..295493- (Nannochloropsis oceanica)
ATGCCATGGACCAAGACAAGACCCCTAGCCAAGCAGTTCCGCAGTGTTGT
TAGCGTCTCGTCACATTTCAAGGTCCCAGATCAAGGCATGACGGAGTACG
AGCTGCTCAGCCGGGGCACTGCCTTTTGCCTCTCCCAACCTGGCCCTCTT
CCTTCTGCTCCTGAAGTCGTCCTCGTAACCTGCTCCCACGTCCTGGCACC
CTATAAATGGCGACAGCATTTTAAAGAACCGTGGCTTGACTTTGTAAATG
ACGAGCACGTCGAGTACCGAATTCAGGCGTGGAAACAGGAGGAGAGCGAC
CCCAGCAGAATTCAGCTGGGTGCCGAGACGAGGGTGTACGGCAAGTCAGT
TCACCACCATAGTCTAGACTTATGTATGCTACCTATACATAAGAATACAG
TAGATGCATATGAATTACTATCATTGGAGGACAGGGACCAACAAGAGCCC
CTTGCAGAGGGCGAGGAATTGACATTTCTAGGCTTTCCCTCCGCCATAAA
CTGTCCTGGCGAGGAACAGCGCGAGAAGCTTGGCGTGCTAACCCCACGTC
GAGTGCAAGGGCGGGCGCTCGCATCGATCCGCGACAAACAGGGTCGAACT
TATGCCAAGACAGAAGAGAGACTGACGGTGGGCATGAGTGGTGGGCCGGT
GGTCGATCGGCACGGGCGATGTTGCGGCATCTTTCAAGGCATTCTGCCCC
CGCCGCCTCAATCCCCCGCAGAAGAAGAGGCGCAAGCCGCCTGTGACCTC
GACCCTACGCTTCGGTCACTTCAAGTAGAAGAATGGGAACGGCATGCCGG
GTTCATCCCCCTGACGGCTGTCCGTGCATTTCTTGAAATTAATTTAGTCA
AATATTGA
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Synonyms
Publications