NO06G00860.1, NO06G00860.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO06G00860.1
Unique Name	NO06G00860.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2226
Alignment location	chr6:292104..294329 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr6	genome	chr6:292104..294329 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO06G00860.1 vs.
Match: CBN75883.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.1 bits (344), Expect = 2.200e-28
Identity = 176/699 (25.18%), Postives = 318/699 (45.49%), Query Frame = 0

Query:    9 SQQREEDEMVEELRAENSFLEDQLQRCIKELKAYQLKT------------------------NNGAHMRSQ--AERMPDLPIWNTSAAAMTPLMAAYDARIKELEELNQLQAGKLECLAGRAEVLALENEELHQAAFARAERHYDKMSLRSQELSGNDFLGSKFSETDEGEEEGDDSLALAIGDEAVAELVQQSGFLRAENAMLLEKTNLAALELSQTSRTLAERDVQIDELLHELMKAGPQLQEQQQELAALRQAQAEQHQEPNQRGNSATTMLEEILGKTKAALAAADNKCQSLEEHLREAQQSAQSREAKWTEQYNKLEIRCRDAEICLPRLRTQLANMAGETQRVCAQLEEAEAVRAELTEVTAALKVTQQDAAEMVRVVEELQAQVEAYEAREEEMTGMVGRYREQAQEALRQCEVASEGEVQARRELRRILEAQQESMNGLNADIEEKVIRGKSQLMEQYERREQELKAEAERALRMRVEVQQAGWEKHRSETLYAELCTVVKDEQGGVRQQLLDLSRRLTESEVARGKAEVKAISLVHEKQQFRHEAAAREEKWVHAKRRLVENLQARDVELAAVREQLSTVEATLGSKTREVARLQRQREKSESAWQVKLEG---LQESYQQQAKATALKLLKAETWLREQDPAICDFQARHARILQRIRTEHKGVIDELHRGLWHEREALQRANQEKEAL 679
            + +R  ++ +   R EN+FL+DQ++R   ELK YQ++                           G  +  Q  A+ +P LP W TS+  M+PL+AAYDARI++LE     Q   +E LAGR   L  EN+ L Q       R  D++  ++    G   +G++                     E V EL ++   L AEN ++ ++T+  A EL      L +R+ Q+  L   L +AG  L+  ++++  L + +A    E  +  N+        + + +AALA    K  + +E  R         EA       + E    DA++   R+R     +      + A+ +EA+       ++   L  T++DA  M++V+  ++ Q+  + +REE  T +    +++ ++AL   + A   E+Q+RREL R+LEA++   +G   ++EE V+  K++ M Q   R++E++  A +A R+R E ++A  ++   E +Y+ L   V+ E   ++ +  +L  R+ E++  R + E  A  L         E  A+E  +   +  L + L+AR+ EL A+R  L        ++ RE  RL    E++   +  KLE    ++++  ++A   A  L ++    RE +  + + +A   + L+  +   +       R L  E E  QR +     L
Sbjct:  178 ADKRLYEQELARTREENAFLQDQVRRVSAELKRYQVRFPRAAADAAASATATRADGSGGRGGEGGGEVSGQDAADDVP-LPPWVTSSEVMSPLLAAYDARIQDLEGQVAAQRDGMEELAGRTHQLVEENDTLRQ----EHTRELDELVQQAGASGGLGGVGAR---------------------EMVGELNERINVLMAENTVMADQTSAMAKELDAVHEELEDREAQMAALTKALSEAGVGLRTLEEKVPRLEREKAHAEGELMKAVNA--------MSEREAALAEVGEKLGASKEEARRLSVKLTEMEADRAAMEKQAE---NDADVAAERVRATGQRITELQGLMAARGQEADINGDRARKLQRELDSTRRDAEGMLQVMSGMERQIADFSSREESTTSLAKESKQKVEDALLARDQARALEIQSRRELARVLEARKADASGHVREMEEAVLTLKNKFMAQVAARDREIQDLAAQAARLRGEAERAARDRAGMEEVYSSLKQGVETETETLKAKFDELQERVLEADAKRDEHEAAARELRQNAVDADREFDAKEAAFRAKENHLDDTLKARERELDAIRVSLRAATDHSENRQREAKRLAALLEETREEYTRKLEEEVLVRKAEVEEANTHAAALERSS---REAERRVGEVEASFKKQLRGAQERERCAGLSTERRLREEGELAQRLSSRNTDL 836

The following BLAST results are available for this feature:

BLAST of NO06G00860.1 vs.

BLAST of NO06G00860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN75883.1	2.200e-28	25.18	conserved unknown protein [Ectocarpus siliculosus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G00860	NO06G00860	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00860.1	NO06G00860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO06G00860.1.cds1	NO06G00860.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:292104..294329+
coding sequence from alignment at chr6:292104..294329+

mRNA sequence

>NO06G00860.1 ID=NO06G00860.1|Name=NO06G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
ATGAATAGCCGTCATCACGGGCATTCGCAACAGCGGGAAGAGGATGAGAT
GGTGGAGGAGCTGAGGGCCGAGAATAGCTTCTTGGAGGACCAACTCCAAC
GCTGCATCAAGGAGCTCAAAGCCTACCAGCTCAAAACCAACAATGGTGCC
CACATGCGGTCTCAAGCCGAGAGAATGCCTGATTTGCCTATCTGGAACAC
CAGCGCAGCCGCCATGACACCGTTGATGGCTGCCTATGACGCGCGGATCA
AGGAGCTTGAGGAGTTGAATCAATTGCAGGCTGGAAAGCTGGAGTGCTTG
GCAGGGCGGGCCGAAGTATTGGCTCTGGAAAATGAGGAACTTCACCAAGC
TGCCTTTGCCCGTGCGGAGAGGCATTACGATAAGATGAGTCTTCGGTCGC
AAGAGCTTTCTGGAAATGATTTTCTGGGCAGTAAATTTAGCGAAACCGAC
GAAGGGGAGGAGGAAGGGGATGACAGTCTTGCACTGGCCATCGGAGACGA
AGCCGTGGCGGAGCTGGTGCAGCAGTCCGGGTTTCTGCGTGCCGAAAATG
CCATGCTTTTGGAGAAAACCAACCTGGCCGCCCTTGAATTGTCTCAGACT
AGCCGGACATTGGCGGAGAGAGACGTGCAGATTGACGAGCTGCTCCACGA
GCTGATGAAGGCGGGGCCGCAGCTGCAGGAACAGCAGCAGGAATTGGCGG
CGTTGCGGCAAGCCCAAGCCGAGCAGCACCAAGAGCCAAACCAACGCGGC
AACTCTGCGACAACGATGTTGGAAGAAATTTTGGGAAAGACCAAGGCTGC
CTTGGCGGCCGCCGATAACAAATGCCAGTCGTTGGAGGAGCACTTGCGCG
AAGCCCAGCAAAGCGCACAGAGCCGAGAGGCGAAGTGGACTGAACAATAC
AATAAATTAGAAATACGATGCCGAGACGCTGAAATATGCCTCCCCCGGTT
GCGTACGCAGCTAGCAAATATGGCTGGAGAGACTCAGAGGGTCTGCGCTC
AGCTCGAGGAGGCCGAGGCAGTGCGCGCGGAGCTCACAGAGGTGACGGCA
GCGCTGAAGGTCACGCAGCAGGACGCTGCAGAGATGGTGCGTGTGGTGGA
GGAGCTTCAAGCTCAAGTCGAGGCTTATGAGGCCCGGGAGGAGGAGATGA
CTGGCATGGTAGGGCGGTATCGAGAACAAGCGCAGGAGGCCTTGCGGCAG
TGTGAGGTAGCGTCTGAAGGAGAGGTGCAAGCCCGTCGAGAACTGCGCCG
TATCCTCGAAGCTCAACAAGAATCGATGAATGGCCTGAACGCTGATATAG
AAGAGAAGGTGATACGTGGCAAGTCTCAGCTGATGGAGCAATACGAGCGG
CGCGAGCAGGAACTCAAGGCGGAGGCCGAGCGTGCGCTGCGTATGCGGGT
GGAGGTGCAGCAAGCGGGATGGGAAAAACATCGGAGCGAAACCTTATACG
CGGAACTGTGCACGGTCGTAAAAGACGAACAAGGCGGGGTCCGACAGCAG
TTGCTGGATCTAAGTCGACGATTGACGGAAAGTGAAGTGGCGCGAGGAAA
AGCGGAAGTGAAGGCCATATCGCTGGTCCACGAGAAGCAACAATTCCGGC
ATGAAGCGGCTGCGCGAGAGGAAAAATGGGTACATGCCAAGCGGCGTTTG
GTGGAGAACCTACAAGCACGTGACGTGGAGCTCGCGGCAGTGAGGGAGCA
ATTGTCTACCGTCGAGGCCACGCTAGGATCCAAAACCCGAGAGGTGGCTC
GATTGCAGCGCCAGCGGGAAAAGTCCGAGAGTGCATGGCAAGTCAAATTG
GAGGGGCTCCAAGAGTCTTACCAGCAGCAGGCAAAGGCAACGGCGCTCAA
GCTACTAAAGGCCGAAACATGGCTCCGCGAACAAGACCCCGCCATCTGCG
ATTTTCAGGCGCGCCATGCCCGAATACTGCAGCGTATTCGGACAGAGCAC
AAGGGCGTAATCGATGAGCTCCATCGGGGACTGTGGCACGAAAGAGAAGC
TCTGCAGCGCGCAAACCAAGAAAAAGAGGCCCTGCTATTCCAGCTCACAT
CCACAACTCACGACCTCAATATGAGCAAGCAGCAGCTGGCCCGCCTAAGA
CACGATCTCCACGTCACCACACAGCAAGTATCTGAATTGAGTGGTCAGCT
CTGTGACAGTATAAGCACACAACAGCACATGGCGAAGGACGAGACCCGAC
TGCGCGCCAACATCAAGAGCAAGTAG

protein sequence of NO06G00860.1

>NO06G00860.1-protein ID=NO06G00860.1-protein|Name=NO06G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp
MNSRHHGHSQQREEDEMVEELRAENSFLEDQLQRCIKELKAYQLKTNNGA
HMRSQAERMPDLPIWNTSAAAMTPLMAAYDARIKELEELNQLQAGKLECL
AGRAEVLALENEELHQAAFARAERHYDKMSLRSQELSGNDFLGSKFSETD
EGEEEGDDSLALAIGDEAVAELVQQSGFLRAENAMLLEKTNLAALELSQT
SRTLAERDVQIDELLHELMKAGPQLQEQQQELAALRQAQAEQHQEPNQRG
NSATTMLEEILGKTKAALAAADNKCQSLEEHLREAQQSAQSREAKWTEQY
NKLEIRCRDAEICLPRLRTQLANMAGETQRVCAQLEEAEAVRAELTEVTA
ALKVTQQDAAEMVRVVEELQAQVEAYEAREEEMTGMVGRYREQAQEALRQ
CEVASEGEVQARRELRRILEAQQESMNGLNADIEEKVIRGKSQLMEQYER
REQELKAEAERALRMRVEVQQAGWEKHRSETLYAELCTVVKDEQGGVRQQ
LLDLSRRLTESEVARGKAEVKAISLVHEKQQFRHEAAAREEKWVHAKRRL
VENLQARDVELAAVREQLSTVEATLGSKTREVARLQRQREKSESAWQVKL
EGLQESYQQQAKATALKLLKAETWLREQDPAICDFQARHARILQRIRTEH
KGVIDELHRGLWHEREALQRANQEKEALLFQLTSTTHDLNMSKQQLARLR
HDLHVTTQQVSELSGQLCDSISTQQHMAKDETRLRANIKSK*

mRNA from alignment at chr6:292104..294329+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO06G00860.1 ID=NO06G00860.1|Name=NO06G00860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at chr6:292104..294329+ (Nannochloropsis oceanica)
ATGAATAGCCGTCATCACGGGCATTCGCAACAGCGGGAAGAGGATGAGAT
GGTGGAGGAGCTGAGGGCCGAGAATAGCTTCTTGGAGGACCAACTCCAAC
GCTGCATCAAGGAGCTCAAAGCCTACCAGCTCAAAACCAACAATGGTGCC
CACATGCGGTCTCAAGCCGAGAGAATGCCTGATTTGCCTATCTGGAACAC
CAGCGCAGCCGCCATGACACCGTTGATGGCTGCCTATGACGCGCGGATCA
AGGAGCTTGAGGAGTTGAATCAATTGCAGGCTGGAAAGCTGGAGTGCTTG
GCAGGGCGGGCCGAAGTATTGGCTCTGGAAAATGAGGAACTTCACCAAGC
TGCCTTTGCCCGTGCGGAGAGGCATTACGATAAGATGAGTCTTCGGTCGC
AAGAGCTTTCTGGAAATGATTTTCTGGGCAGTAAATTTAGCGAAACCGAC
GAAGGGGAGGAGGAAGGGGATGACAGTCTTGCACTGGCCATCGGAGACGA
AGCCGTGGCGGAGCTGGTGCAGCAGTCCGGGTTTCTGCGTGCCGAAAATG
CCATGCTTTTGGAGAAAACCAACCTGGCCGCCCTTGAATTGTCTCAGACT
AGCCGGACATTGGCGGAGAGAGACGTGCAGATTGACGAGCTGCTCCACGA
GCTGATGAAGGCGGGGCCGCAGCTGCAGGAACAGCAGCAGGAATTGGCGG
CGTTGCGGCAAGCCCAAGCCGAGCAGCACCAAGAGCCAAACCAACGCGGC
AACTCTGCGACAACGATGTTGGAAGAAATTTTGGGAAAGACCAAGGCTGC
CTTGGCGGCCGCCGATAACAAATGCCAGTCGTTGGAGGAGCACTTGCGCG
AAGCCCAGCAAAGCGCACAGAGCCGAGAGGCGAAGTGGACTGAACAATAC
AATAAATTAGAAATACGATGCCGAGACGCTGAAATATGCCTCCCCCGGTT
GCGTACGCAGCTAGCAAATATGGCTGGAGAGACTCAGAGGGTCTGCGCTC
AGCTCGAGGAGGCCGAGGCAGTGCGCGCGGAGCTCACAGAGGTGACGGCA
GCGCTGAAGGTCACGCAGCAGGACGCTGCAGAGATGGTGCGTGTGGTGGA
GGAGCTTCAAGCTCAAGTCGAGGCTTATGAGGCCCGGGAGGAGGAGATGA
CTGGCATGGTAGGGCGGTATCGAGAACAAGCGCAGGAGGCCTTGCGGCAG
TGTGAGGTAGCGTCTGAAGGAGAGGTGCAAGCCCGTCGAGAACTGCGCCG
TATCCTCGAAGCTCAACAAGAATCGATGAATGGCCTGAACGCTGATATAG
AAGAGAAGGTGATACGTGGCAAGTCTCAGCTGATGGAGCAATACGAGCGG
CGCGAGCAGGAACTCAAGGCGGAGGCCGAGCGTGCGCTGCGTATGCGGGT
GGAGGTGCAGCAAGCGGGATGGGAAAAACATCGGAGCGAAACCTTATACG
CGGAACTGTGCACGGTCGTAAAAGACGAACAAGGCGGGGTCCGACAGCAG
TTGCTGGATCTAAGTCGACGATTGACGGAAAGTGAAGTGGCGCGAGGAAA
AGCGGAAGTGAAGGCCATATCGCTGGTCCACGAGAAGCAACAATTCCGGC
ATGAAGCGGCTGCGCGAGAGGAAAAATGGGTACATGCCAAGCGGCGTTTG
GTGGAGAACCTACAAGCACGTGACGTGGAGCTCGCGGCAGTGAGGGAGCA
ATTGTCTACCGTCGAGGCCACGCTAGGATCCAAAACCCGAGAGGTGGCTC
GATTGCAGCGCCAGCGGGAAAAGTCCGAGAGTGCATGGCAAGTCAAATTG
GAGGGGCTCCAAGAGTCTTACCAGCAGCAGGCAAAGGCAACGGCGCTCAA
GCTACTAAAGGCCGAAACATGGCTCCGCGAACAAGACCCCGCCATCTGCG
ATTTTCAGGCGCGCCATGCCCGAATACTGCAGCGTATTCGGACAGAGCAC
AAGGGCGTAATCGATGAGCTCCATCGGGGACTGTGGCACGAAAGAGAAGC
TCTGCAGCGCGCAAACCAAGAAAAAGAGGCCCTGCTATTCCAGCTCACAT
CCACAACTCACGACCTCAATATGAGCAAGCAGCAGCTGGCCCGCCTAAGA
CACGATCTCCACGTCACCACACAGCAAGTATCTGAATTGAGTGGTCAGCT
CTGTGACAGTATAAGCACACAACAGCACATGGCGAAGGACGAGACCCGAC
TGCGCGCCAACATCAAGAGCAAGTAG

Coding sequence (CDS) from alignment at chr6:292104..294329+

>NO06G00860.1 ID=NO06G00860.1|Name=NO06G00860.1|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at chr6:292104..294329+ (Nannochloropsis oceanica)
ATGAATAGCCGTCATCACGGGCATTCGCAACAGCGGGAAGAGGATGAGAT
GGTGGAGGAGCTGAGGGCCGAGAATAGCTTCTTGGAGGACCAACTCCAAC
GCTGCATCAAGGAGCTCAAAGCCTACCAGCTCAAAACCAACAATGGTGCC
CACATGCGGTCTCAAGCCGAGAGAATGCCTGATTTGCCTATCTGGAACAC
CAGCGCAGCCGCCATGACACCGTTGATGGCTGCCTATGACGCGCGGATCA
AGGAGCTTGAGGAGTTGAATCAATTGCAGGCTGGAAAGCTGGAGTGCTTG
GCAGGGCGGGCCGAAGTATTGGCTCTGGAAAATGAGGAACTTCACCAAGC
TGCCTTTGCCCGTGCGGAGAGGCATTACGATAAGATGAGTCTTCGGTCGC
AAGAGCTTTCTGGAAATGATTTTCTGGGCAGTAAATTTAGCGAAACCGAC
GAAGGGGAGGAGGAAGGGGATGACAGTCTTGCACTGGCCATCGGAGACGA
AGCCGTGGCGGAGCTGGTGCAGCAGTCCGGGTTTCTGCGTGCCGAAAATG
CCATGCTTTTGGAGAAAACCAACCTGGCCGCCCTTGAATTGTCTCAGACT
AGCCGGACATTGGCGGAGAGAGACGTGCAGATTGACGAGCTGCTCCACGA
GCTGATGAAGGCGGGGCCGCAGCTGCAGGAACAGCAGCAGGAATTGGCGG
CGTTGCGGCAAGCCCAAGCCGAGCAGCACCAAGAGCCAAACCAACGCGGC
AACTCTGCGACAACGATGTTGGAAGAAATTTTGGGAAAGACCAAGGCTGC
CTTGGCGGCCGCCGATAACAAATGCCAGTCGTTGGAGGAGCACTTGCGCG
AAGCCCAGCAAAGCGCACAGAGCCGAGAGGCGAAGTGGACTGAACAATAC
AATAAATTAGAAATACGATGCCGAGACGCTGAAATATGCCTCCCCCGGTT
GCGTACGCAGCTAGCAAATATGGCTGGAGAGACTCAGAGGGTCTGCGCTC
AGCTCGAGGAGGCCGAGGCAGTGCGCGCGGAGCTCACAGAGGTGACGGCA
GCGCTGAAGGTCACGCAGCAGGACGCTGCAGAGATGGTGCGTGTGGTGGA
GGAGCTTCAAGCTCAAGTCGAGGCTTATGAGGCCCGGGAGGAGGAGATGA
CTGGCATGGTAGGGCGGTATCGAGAACAAGCGCAGGAGGCCTTGCGGCAG
TGTGAGGTAGCGTCTGAAGGAGAGGTGCAAGCCCGTCGAGAACTGCGCCG
TATCCTCGAAGCTCAACAAGAATCGATGAATGGCCTGAACGCTGATATAG
AAGAGAAGGTGATACGTGGCAAGTCTCAGCTGATGGAGCAATACGAGCGG
CGCGAGCAGGAACTCAAGGCGGAGGCCGAGCGTGCGCTGCGTATGCGGGT
GGAGGTGCAGCAAGCGGGATGGGAAAAACATCGGAGCGAAACCTTATACG
CGGAACTGTGCACGGTCGTAAAAGACGAACAAGGCGGGGTCCGACAGCAG
TTGCTGGATCTAAGTCGACGATTGACGGAAAGTGAAGTGGCGCGAGGAAA
AGCGGAAGTGAAGGCCATATCGCTGGTCCACGAGAAGCAACAATTCCGGC
ATGAAGCGGCTGCGCGAGAGGAAAAATGGGTACATGCCAAGCGGCGTTTG
GTGGAGAACCTACAAGCACGTGACGTGGAGCTCGCGGCAGTGAGGGAGCA
ATTGTCTACCGTCGAGGCCACGCTAGGATCCAAAACCCGAGAGGTGGCTC
GATTGCAGCGCCAGCGGGAAAAGTCCGAGAGTGCATGGCAAGTCAAATTG
GAGGGGCTCCAAGAGTCTTACCAGCAGCAGGCAAAGGCAACGGCGCTCAA
GCTACTAAAGGCCGAAACATGGCTCCGCGAACAAGACCCCGCCATCTGCG
ATTTTCAGGCGCGCCATGCCCGAATACTGCAGCGTATTCGGACAGAGCAC
AAGGGCGTAATCGATGAGCTCCATCGGGGACTGTGGCACGAAAGAGAAGC
TCTGCAGCGCGCAAACCAAGAAAAAGAGGCCCTGCTATTCCAGCTCACAT
CCACAACTCACGACCTCAATATGAGCAAGCAGCAGCTGGCCCGCCTAAGA
CACGATCTCCACGTCACCACACAGCAAGTATCTGAATTGAGTGGTCAGCT
CTGTGACAGTATAAGCACACAACAGCACATGGCGAAGGACGAGACCCGAC
TGCGCGCCAACATCAAGAGCAAGTAG

Synonyms

Publications